XLOC_013948 (kdf1b)


Basic Information

Item Value
gene id XLOC_013948
gene name kdf1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 14113886 ~ 14127134 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027853
GCAGTCCACATGAAAATATAGGTAAATGAACAAAcgtattatattacatatttgtaTTAACGTTAATTTAGCCCTACCTTGGTTACAGACGTTTTCAGATGTGAATAGCactgaatgaaaacaaaatggTTTTAGTCTTGGCAAATTACGTCACCAGTATCCATATCCTGGTGTACCTGTTAAATCAGGTAGCTTACTAGATATACCTGTGGGTTCAGACACAGGGACGACGCGCATTCAGGGCAGTCGGCTTGCTTTcggtttaatttagttttgccaAAGTTTAAGGAcagctggtaaaaaaaaaatcagcagggTACAGTCGTGGAGCAAGGTTAAAACCAGGTCGAACAACCTTTTTGAGCTGTGCGGACTTCCGGAAGAGATTCGTCAGACAGACCGCGACATTTCCCCCATATGGTtCCCTGAGGGCTCCATTTAGCATTAGGTAACCAACAAAGCAGACTACAGAGGACGGTCTGGGTCGAGTGTTGTCCCTATGGAGAACAACCCGTCCTGGACCAGTGGTCCCATTGAGGAAGGGCCATACCAAGAGCGCTCTGTTGACCCTGTGGAGATTGAGATCCAAAGCTATGGAGTACGACACAAAGTTAACAAGGATGCCAATGGAAATACAACTGGGCCAGAGACTGTAAGCTTTCTCCCTGCTAAAGAGGAGCCCGCATCTGGGTCATGTATGTGTGGACCTTGTGCTTCTGTGGGTAGCTGCAGAAAACTTTTTTGTAGTGTATTGACTTGTGGACTGTACCGCATATGCCAGCGTTTGCCTTGCCTTGTTTCGAATGAAAGCACAGCGGTCACTGCGCAGACAGAGATCCAGCCAATCTCTTCACAGGTTCAGGAGGGCTTCTATCCTGACATCCGCATTGCGGGGGTCAAGGTTGACCCATCTGTGATTGAAGATGTCGATGGCTTTGATTCTGTTTCCCCTTCTACATTTGAAATGAATAGTTTAAATGTGAGTGGAATACTGGAAGATGATTTAGTCAATGGTAATAAGATGGAAGATGTGGATCAACTCATCACCCAGAAACTTATGGAGGTCTTCTCTGAGTTTGAGATCAACGAGTTGGCCAAGTGCACCACAGACTCCATGTTCCTGCGGCGGTCCCGGGAAATCAGTCAGCTGATCTCGGATATCGTGGAGGAGCACAAAATGGAGGAGAAGGAAGCCGAGTGCAGGCTTGTTCGAGAGATTATTCGCATAAGTACTCGGAAAAGTAGGAAGAGGCCACAAATCAAGCAGCCGGAATTGCAGCGGGACAGTGGCAATGACACCTGGAACAGCAAAGGCATCAGCCAAAAGAGCAGCTTCAATTCCATGAGTGGTCAAAaCTTGCAGATTTCTATGGAGAGGTCTGATGACATAGAAGCCAGGAAATTTCGCAACAACAGTAACCAGTCGTTCTCTCGGAGTTTCCAGGAAACTGGAGTGCCCATTACATCAGATACTCCTTTACTATACAGCCGCATTCAGGCATGAGAATATCCTTTCAgacagtacatatgtaattattTTCAAACGTCCATTTACAATGAATCCATCTCTGTGAAGAATATATCCTCTGGCTTCCCCTGTAGTGAGGATGATTTTGAAGTATACCCTTAAAAATTGTGATTTCATGGtcagtttttttctctcaaaacGTAGTTGTATTTATGCTTGTTATTCATATTTTTGTCCTTTGCTTTTTTGTTATGGATGTGTGAAGGATCTGAATGTTGCAGGTGACACAACTTTGCTTGAGTTTTGTGAAAAACTGTATGACCTCTTTCTAACCAACATATGAATATATACTGAACACTAAAAAATTCTGTGATCAATTAGTTCTGTCAGCAGATGTtgttagttcattgtaacttattaaactaagtttatcaggttttaacttaattttatatgtTTAGTTTAGCTTAACaatataagttcaatgaactTATTAGGTTAATTTGATTCCGCTTAAAAATTTGAcacaaccaggatttttttactgtgtaggtCTATTATTGCCGTCATAGGCCTGATTCTTTCATAATGATTTGATTCTACACTTTTCTGCCTTTTTAAAGAGTTCGATCacacaaaattgaaaattctgtcatttacgcTTGTGTCATTTCAGAGAGGTATGGATTATATCATATAATGAAGAATACATTTTTGAAGAACTTAATGAGTTAATGGAGGCTTCAGTTGTGCAGTGGTGTTGTTATTTCCTGACCACACATGTAAGAAAACAATGTTAGCCTAAAGAAGATGTAATATAGGGAACAAGTCATATGGACAGCTGTTGTACAGATTATTGTTCAagaattcattgtttttttttcactgaagAAAGGAAGGATTGTGTTCAACATCAGCTATGTTTCCATGGTGCCATTTATTTTTATGCGCCTTTTGGAATATTGTGTTAA
>TCONS_00027854
ATGGAGAACAACCCGTCCTGGACCAGTGGTCCCATTGAGGAAGGGCCATACCAAGAGCGCTCTGTTGACCCTGTGGAGATTGAGATCCAAAGCTATGGAGTACGACACAAAGTTAACAAGGATGCCAATGGAAATACAACTGGGCCAGAGACTGTAAGCTTTCTCCCTGCTAAAGAGGAGCCCGCATCTGGGTCATGTATGTGTGGACCTTGTGCTTCTGTGGGTAGCTGCAGAAAACTTTTTTGTAGTGTATTGACTTGTGGACTGTACCGCATATGCCAGCGTTTGCCTTGCCTTGTTTCGAATGAAAGCACAGCGGTCACTGCGCAGACAGAGATCCAGCCAATCTCTTCACAGGTTCAGGAGGGCTTCTATCCTGACATCCGCATTGCGGGGGTCAAGGTTGACCCATCTGTGATTGAAGATGTCGATGGCTTTGATTCTGTTTCCCCTTCTACATTTGAAATGAATAGTTTAAATGTGAGTGGAATACTGGAAGATGATTTAGTCAATGGTAATAAGATGGAAGATGTGGATCAACTCATCACCCAGAAACTTATGGAGGTCTTCTCTGAGTTTGAGATCAACGAGTTGGCCAAGTGCACCACAGACTCCATGTTCCTGCGGCGGTCCCGGGAAATCAGTCAGCTGATCTCGGATATCGTGGAGGAGCACAAAATGGAGGAGAAGGAAGCCGAGTGCAGGCTTGTTCGAGAGATTATTCGCATAAGTACTCGGAAAAGTAGGAAGAGGCCACAAATCAAGCAGCCGGAATTGCAGCGGGACAGTGGCAATGACACCTGGAACAGCAAAGGCATCAGCCAAAAGAGCAGCTTCAATTCCATGAGTGGTCAAAaCTTGCAGATTTCTATGGAGAGGTCTGATGACATAGAAGCCAGGAAATTTCGCAACAACAGTAACCAGTCGTTCTCTCGGAGTTTCCAGGAAACTGGAGTGCCCATTACATCAGATACTCCTTTACTATACAGCCGCATTCAGGCATGA

Function

symbol description
kdf1b Predicted to be involved in regulation of epidermal cell division. Predicted to act upstream of or within keratinocyte development. Predicted to be active in cell junction. Human ortholog(s) of this gene implicated in ectodermal dysplasia 12. Orthologous to human KDF1 (keratinocyte differentiation factor 1).

GO:

id name namespace
GO:0010482 regulation of epidermal cell division biological_process
GO:0003334 keratinocyte development biological_process
GO:0030054 cell junction cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-285 Predicted to be involved in regulation of epidermal cell division. Predicted to act upstream of or within keratinocyte development. Predicted to be active in cell junction. Human ortholog(s) of this gene implicated in ectodermal dysplasia 12. Orthologous to human KDF1 (keratinocyte differentiation factor 1).

Ensembl:

ensembl_id ENSDARG00000101878

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027853 False 2439 mRNA 0.41 4 14113886 14127134
TCONS_00027854 True 1005 mRNA 0.48 3 14115838 14126199

Neighbor

gene id symbol gene type direction distance location
XLOC_013947 zgc:175136 coding upstream 919 14109348 ~ 14112967 (+)
XLOC_013946 tpbga coding upstream 51899 14059349 ~ 14061987 (+)
XLOC_013945 tmem222b coding upstream 77994 13994563 ~ 14035892 (+)
XLOC_013944 BX530067.1 coding upstream 279893 13833879 ~ 13833993 (+)
XLOC_013943 NA coding upstream 308013 13796592 ~ 13805873 (+)
XLOC_013949 nudc coding downstream 30941 14158075 ~ 14169457 (+)
XLOC_013950 arid1ab coding downstream 224426 14351560 ~ 14438821 (+)
XLOC_013951 zdhhc18b coding downstream 327172 14454306 ~ 14470811 (+)
XLOC_013952 tent5bb coding downstream 446864 14573998 ~ 14588414 (+)
XLOC_013953 NA coding downstream 723683 14850817 ~ 14871231 (+)
XLOC_013942 NA non-coding upstream 478076 13631325 ~ 13635810 (+)
XLOC_013938 NA non-coding upstream 864637 13230383 ~ 13249249 (+)
XLOC_013937 NA non-coding upstream 998360 13115265 ~ 13115526 (+)
XLOC_013955 NA non-coding downstream 898782 15025916 ~ 15027342 (+)
XLOC_013956 NA non-coding downstream 1174554 15301688 ~ 15303833 (+)
XLOC_013963 snrnau11 non-coding downstream 1934692 16061826 ~ 16061961 (+)
XLOC_013965 CR385068.4 non-coding downstream 1941836 16068970 ~ 16069103 (+)

Expression


Co-expression Network