XLOC_013949 (nudc)


Basic Information

Item Value
gene id XLOC_013949
gene name nudc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 14158075 ~ 14169457 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027855
GGGCGGTTGTTGTATCTAGGAAATAGTTAGGGCAACACACCGGTGGTAGCGTGATTCTTAGCATCACCCGTCAAATCGCCTATTTTATTTAGCTGTTTTCTTCTGGAATTAGTGAAAATGGGTGACGATGACGAAAGATTTGATGGGATGTTGCTTGCAATGGCGCAGCAGCATGAAGGAGGAGTTCAGGAGCTGGTAAACACATTCTTTAGTTTTCTAAGGAGGAAAACGGATTTCTTCACAGGAGGAGAATCTGGAGCCCCAGAGAAGCTGGTTAAAGAGGCGTTTGCTCATCACAATCAGCTCGCCCTCCAAGTTCAGAAAGAAAAACAGTCTAGACAAGAAAAAGAGAGGAAGGAGAAGGCTGAGAGAGCTGCTAAACTAAAGGAAGAAGAGATGAAGAAGAGGAAGATTGATGCAGAGGAGCCCAGAATCAAAGAACTCACAGATGAAGAGGCAGAGAGACTCCAGTCACAATTACAAACTAAGCAAGAAGAGCAGAAAAATTCAGAAGTAGCTGAGAAAACGGATGCAGATTCAAAAGACAAAAAAGGGTCGGACTCTGAAGGAGAGGAAGATGAAAAGGACAAAGACAAGGTTAAGCCAAATGCTGGAAATGGAGCAGATCTCCCAAACTACCGCTGGACTCAGTCCCTGTCTGAAGTGGATCTGGTTGTGCCTTTCGATGTGAGCTTCCGTCTGAAGGGGAAGGATGTGGTGGTTGACGTGCAGCGGCGCACACTAAAGGTGGGCTTGAAGGGTCACCCGCCTCTGATCGATGGACAACTCTTCAATGAGGTCAAAGTGGAGGAGAGCTCATGGCTCATCGAGGATGGAAAAGTGGTCACTATCCATTTCGAGAAGATAAATAAAATGGAGTGGTGGAACAAGTTAGTGACCACAGACCCTGAAATCAACACCAAGAAAATCTGCCCAGAGAACTCCAAGCTGTCAGATCTGGATGGCGAGACGCGCAGTATGGTGGAGAAGATGATGTATGACCAGAGGCAGAAGTCCATGGGTTTACCCACCTCTGAAGAGCAGAAGAAACAGGACATCCTGAAGAAGTTCATGGCTCAGCATCCAGAGATGGACTTCTCTAAAGCCAAGTTCAGCTGAGAGACGCTCGTGCTGCGTGAACATGTGAATGATCATCTCTGTACATGTGATTCTGATCTGCTTATCACACCATAAGTTCGAGCTGCTTGTGTTTGCTTCGGTCATTGTTCGCCTAATAAGTTTCACTGTTGTGATGGTGGAAAGTCATGATACACCATCTcttgcttttgttgtttttttaataaatcatttcaaacCCTC
>TCONS_00027856
GGAAATAGTTAGGGCAACACACCGGTGGTAGCGTGATTCTTAGCATCACCCGTCAAATCGCCTATTTTATTTAGCTGTTTTCTTCTGGAATTAGTGAAAATGGGTGACGATGACGAAAGATTTGATGGGATGTTGCTTGCAATGGCGCAGCAGCATGAAGGAGGAGTTCAGGAGCTGGTTAAAGAGGCGTTTGCTCATCACAATCAGCTCGCCCTCCAAGTTCAGAAAGAAAAACAGTCTAGACAAGAAAAAGAGAGGAAGGAGAAGGCTGAGAGAGCTGCTAAACTAAAGGAAGAAGAGATGAAGAAGAGGAAGATTGATGCAGAGGAGCCCAGAATCAAAGAACTCACAGATGAAGAGGCAGAGAGACTCCAGTCACAATTACAAACTAAGCAAGAAGAGCAGAAAAATTCAGAAGTAGCTGAGAAAACGGATGCAGATTCAAAAGACAAAAAAGGGTCGGACTCTGAAGGAGAGGAAGATGAAAAGGACAAAGA

Function

symbol description
nudc Predicted to enable unfolded protein binding activity. Acts upstream of or within cilium assembly and determination of heart left/right asymmetry. Predicted to be located in microtubule. Predicted to be active in cytoplasm. Orthologous to human NUDC (nuclear distribution C, dynein complex regulator).

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0060271 cilium assembly biological_process
GO:0032502 developmental process biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005737 cytoplasm cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko00760 Nicotinate and nicotinamide metabolism
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-040426-899 Predicted to enable unfolded protein binding activity. Acts upstream of or within cilium assembly and determination of heart left/right asymmetry. Predicted to be located in microtubule. Predicted to be active in cytoplasm. Orthologous to human NUDC (nuclear distribution C, dynein complex regulator).

Ensembl:

ensembl_id ENSDARG00000104837

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027855 False 1320 mRNA 0.46 9 14158075 14169457
TCONS_00027856 True 497 mRNA 0.44 4 14158093 14162230

Neighbor

gene id symbol gene type direction distance location
XLOC_013948 kdf1b coding upstream 30941 14113886 ~ 14127134 (+)
XLOC_013947 zgc:175136 coding upstream 45108 14109348 ~ 14112967 (+)
XLOC_013946 tpbga coding upstream 96088 14059349 ~ 14061987 (+)
XLOC_013945 tmem222b coding upstream 122183 13994563 ~ 14035892 (+)
XLOC_013944 BX530067.1 coding upstream 324082 13833879 ~ 13833993 (+)
XLOC_013950 arid1ab coding downstream 182103 14351560 ~ 14438821 (+)
XLOC_013951 zdhhc18b coding downstream 284849 14454306 ~ 14470811 (+)
XLOC_013952 tent5bb coding downstream 404541 14573998 ~ 14588414 (+)
XLOC_013953 NA coding downstream 681360 14850817 ~ 14871231 (+)
XLOC_013954 oprd1a coding downstream 751543 14921000 ~ 14951756 (+)
XLOC_013943 NA non-coding upstream 352202 13796592 ~ 13805873 (+)
XLOC_013942 NA non-coding upstream 522265 13631325 ~ 13635810 (+)
XLOC_013938 NA non-coding upstream 908826 13230383 ~ 13249249 (+)
XLOC_013937 NA non-coding upstream 1042549 13115265 ~ 13115526 (+)
XLOC_013955 NA non-coding downstream 856459 15025916 ~ 15027342 (+)
XLOC_013956 NA non-coding downstream 1132231 15301688 ~ 15303833 (+)
XLOC_013963 snrnau11 non-coding downstream 1892369 16061826 ~ 16061961 (+)
XLOC_013965 CR385068.4 non-coding downstream 1899513 16068970 ~ 16069103 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_01433381_01435726 NA coding CI01000320 null 1433138 ~ 1435726 (+)