XLOC_013955


Basic Information

Item Value
gene id XLOC_013955
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 15025916 ~ 15027342 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029881
ACAGCACTGGCTAATTTCTTTACCGACGCTTCATTCTGTGAAATCTTGTGGAGTAGGAGAGCAACGCATTGATCAAAAGATCCAAATGGAAAGAAGAATCAAAAAAGCTGTTTCTCCTGAGGTGTTTTTTTCTCTTCGCCATGTTCACACTCCTGAATCCACCTCAGGTTCCTTATCAGAAGGCAGCAGTATGCATCATTCATGAAGGTTACACTGATGCATGGGACACTGGGGAAAGGAGGAGAATGAAAGAGAAGAAATGTTGAGCCGCTGTCTAACAGGGATAAGACGATCATGCGAGTGAGACCCAAAACAAAGCATGCCGTTCTCCCATACTGGCACATACACTTGCATATATCAGACCAAATCTGAGTGGGGAACACAATCTTAAAGAGAGCCAGTGGGTAGTTTGGCTCAAAGAGAACTTATCTCTCAGGAAGACGACAGTCCCATATTCATGAAAAATCcctcttctcatacttcagcacCTGCTATATTTGATGGAAAGTCATGCTTATGTGCAAGTCAAATGCTGTCAAATGCTCCAGACTCTCACATTTACATGAGTTTCTAGAATAAGACAAGAAATATGTcaccctgaaccacaaaaccatTCTTAAGTGTCAGGGTTATTTATTGTCAAATTGAGATTTACTGTATTTACCTGACAACTGAATAAAGCTTTACATTAATGCAACGTTTATTGTTATGATAGGACAATATTTAATTgag

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029881 True 732 lncRNA 0.40 2 15025916 15027342

Neighbor

gene id symbol gene type direction distance location
XLOC_013954 oprd1a coding upstream 74160 14921000 ~ 14951756 (+)
XLOC_013953 NA coding upstream 154685 14850817 ~ 14871231 (+)
XLOC_013952 tent5bb coding upstream 437502 14573998 ~ 14588414 (+)
XLOC_013951 zdhhc18b coding upstream 555105 14454306 ~ 14470811 (+)
XLOC_013950 arid1ab coding upstream 587095 14351560 ~ 14438821 (+)
XLOC_013956 NA coding downstream 274346 15301688 ~ 15303833 (+)
XLOC_013957 lin28a coding downstream 413499 15440841 ~ 15473157 (+)
XLOC_013958 pdik1l coding downstream 457945 15485287 ~ 15518874 (+)
XLOC_013959 ppp1r8a coding downstream 494655 15521997 ~ 15532515 (+)
XLOC_013960 foxo6b coding downstream 543948 15571290 ~ 15620967 (+)
XLOC_013944 BX530067.1 non-coding upstream 1191923 13833879 ~ 13833993 (+)
XLOC_013943 NA non-coding upstream 1220043 13796592 ~ 13805873 (+)
XLOC_013942 NA non-coding upstream 1390106 13631325 ~ 13635810 (+)
XLOC_013938 NA non-coding upstream 1776667 13230383 ~ 13249249 (+)
XLOC_013963 snrnau11 non-coding downstream 1034484 16061826 ~ 16061961 (+)
XLOC_013965 CR385068.4 non-coding downstream 1041628 16068970 ~ 16069103 (+)
XLOC_013967 NA non-coding downstream 1684484 16711826 ~ 16712299 (+)
XLOC_013968 CR318590.2 non-coding downstream 1880367 16907709 ~ 16909487 (+)

Expression


Co-expression Network