XLOC_013956


Basic Information

Item Value
gene id XLOC_013956
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 15301688 ~ 15303833 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029882
GAATAACAACATCTTTGCATATAATATGAAATGGAATCAAGACAGAACACTTCAGGATTTTGTGCATAGTTTATCGAATAAAACAAACATAGCCAAAGAAACAGAAACCAAGTTCTAATCCAAATTCTTGTTACTCGTATATTTCTGATCATTTTTATCCTGTCTGCAGATTACACAAGAGATCTCTGTCTACCTGAATACATCACAACGGGAGGAACACCATACTGACATCTTCCCACATCTAAATAATCAACACCACGAGAACATCTGAACCATCAAGCAGAGCTGTTCATCTTCTGAGTTTGACCACATTCTATAGACTAGTTACTGGAAATGCATGAGTGTTTTAATTTCTGGTCAAAATATTCAACTGACCGTCACGTACAATaaagaaaaacacacatacaccgcAATGCTATAGAATAGagtataaatgcatataaaaacatacatttgtaCAGTAGGATATCTATTAAGATTTACAGTAGgatatagattttttattattaatgtagtaTTCGTGATGAGTGGAAAATTCCTTAAATGGTTTCATGCTGTAACACAATAAAACGTGAAAACGTGAATTTCATTGGCACCttatatatagtttaattaaatatgtgtAATAAAGTGTATTCATTTTACCCTACATATCTTACACACGCATGTACAGTACATGCGTGCTTGGTGTGTGTGTAAAAGGTAGACAGCAATCAAGAAAATATACATAAGTCGGGAACATAATGTATCAACACATCAAGGTTTAACCAAGCAAAAAACTTACTCAGATGGTTTAACGAAGTCCCAATAACTTCAATTCTCTGGTATACCCAAAATCTGAAGGACAGTTTATCcgaaaatgtaaattctgtcattatttatgcATCTTCAAATCTATACCATCATGTTAGACAAAATGTACAGGCtcaagtcatttttaaaatagtcTAAAAGTGGACCATACAACCCATGCCTTCAGTTTAAGTCTTCTGAAACCATGCTATAGTCTTGAACAGCATTTATGTATTGGTTTTTATATTTGCTGACATACATGTGTAATTTAAATATGCTAATTACATCAATAACTGACATAATTAAGATTGTTGTTTAAAGTGTCTCATGTAAACATCCACTATCCTTGGGACAAAACGTCATATATGAAACAACAGTTTCACATAGatctaatttgaaaaaaaaaaaaaaatgctttacttaCAGGCGGCaagaataaataattgtaaaaagtgATGACAGTATAACATGTTGATCTATTTCTATGAGTAAAAGGATGAAACATTAAACACTGTAGCCAATCCCAGTCCTGTctgtttaacaaatatatttagcGATCCTACATTTAGATTTTTGCAGTCGTACTATAGCACACTGTAAATAGAGCAAACTTGATGTAAATAAAATGATTGAGCGGTGAAGCAGTCATATTAATTATATGTGGATTTGTGGAGAGAGTGCAGAACTTGAACCTAATTGAAGTGACTGCAGAACTCTTTGTTGTCTTGTATATTCTCTAATTTATTATAGACTACTTAACTAATATTTGAGAGCTAAATTGAGAAAGTCAAATCAATTTGGAGGGTTAGATGTGGACCTGCTGGTTATGACAACATCTCTGCAGGCACTTTGATGTCAAAAGGATatcaaaaaacacattaaaaatgcaaatcgatttgatgtcaaaccTTTGACGTCAGTTTAACATCAACACATTGATGCCATTTTGACCTATAAAGTAATGACTCAGAAAGTATTTTTATGTAAGAAAGTATTATTTTGTGATTTtagcatatttgtgtgtgttgagcatcagttaataCAATGTTAAcatctgtcagctttaattgtggagaaAACGGGAtagttttgagcttttgtcaactAATTTCATTttctgggtttaaaatcatttttgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029882 True 1931 lncRNA 0.32 2 15301688 15303833

Neighbor

gene id symbol gene type direction distance location
XLOC_013955 NA coding upstream 274346 15025916 ~ 15027342 (+)
XLOC_013954 oprd1a coding upstream 349932 14921000 ~ 14951756 (+)
XLOC_013953 NA coding upstream 430457 14850817 ~ 14871231 (+)
XLOC_013952 tent5bb coding upstream 713274 14573998 ~ 14588414 (+)
XLOC_013951 zdhhc18b coding upstream 830877 14454306 ~ 14470811 (+)
XLOC_013957 lin28a coding downstream 137008 15440841 ~ 15473157 (+)
XLOC_013958 pdik1l coding downstream 181454 15485287 ~ 15518874 (+)
XLOC_013959 ppp1r8a coding downstream 218164 15521997 ~ 15532515 (+)
XLOC_013960 foxo6b coding downstream 267457 15571290 ~ 15620967 (+)
XLOC_013961 ctps1a coding downstream 712048 16015881 ~ 16031503 (+)
XLOC_013944 BX530067.1 non-coding upstream 1467695 13833879 ~ 13833993 (+)
XLOC_013943 NA non-coding upstream 1495815 13796592 ~ 13805873 (+)
XLOC_013942 NA non-coding upstream 1665878 13631325 ~ 13635810 (+)
XLOC_013963 snrnau11 non-coding downstream 757993 16061826 ~ 16061961 (+)
XLOC_013965 CR385068.4 non-coding downstream 765137 16068970 ~ 16069103 (+)
XLOC_013967 NA non-coding downstream 1407993 16711826 ~ 16712299 (+)
XLOC_013968 CR318590.2 non-coding downstream 1603876 16907709 ~ 16909487 (+)
XLOC_013970 NA non-coding downstream 2049807 17353640 ~ 17354668 (+)

Expression


Co-expression Network