XLOC_013964 (gmeb1)


Basic Information

Item Value
gene id XLOC_013964
gene name gmeb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 16064439 ~ 16089187 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027880
ACTCAAAGCTTCTCGCTATGTAAGGATGACACCGACCGCGATCTAAACGTGTTGAAGGGGAGTGCAGGCTATGGCTGAGGCAGAAGTCACTGTGACCGTGGAGGACATGGTGGTGATGAAGAGCTCTGAGGAAGAGGATGTAGAGCCTGACAACCAAAGCAAGACTCAAATGATCCTCCAGCTGCAGCCAATGACAGCAGGGCTTGGAGATGAAAGCAATGAGACGGATGCTGCAGTTGTGGCAGTGGAAGATGAGGTTTCTGCTGAAGGAGAGGATTTGGAGCTTGGTTATCCCATTACATGCGGCGAGAGTAAAGCCATCCTTCTGTTCAAGAAGTTTGTCTGCCCAGGAATCAATGTCAGATGTGTAAAGTATGAGGATCAGCTGATAAGTCCAAAGCAGTTTGTGCACATGTCTGGTAAAGCCACCTTGAAAGACTGGAAGCGAGCGATCCGGATGGGTGGAGTGATGCTCAGAAAGATGATGGACTCGGGTCAGCTAGATTTTTATCAGCACAGCACTCTCTGCACCAATACCTGCCGCAGCACCAAGTTTGACCTGCTGATCAACAACACACGCTTCCCACCGGACGGCAGCGGCCTCAACACACCCATTACAGCTGCAGGCCATGTCACTGTGGGTAATGGTGGTCAAGCGGCCACAGTAGAGGAAAAGAAAGAAGACGTGATCGGTGCAGTGGAGTGGAGCCCAGATACCTCAGACAAAAGAGACACATCTGAAATCTCAGAGGAGACGCTGAGTTTCTGGAGGGGTATCGCTGAGGTGGGGCTGATGGGGGAGGTGGTGTCTAATATTCGCTCAGAGCTGTTGGGTCTGCTGAGAGGAGTTCAGCTACGCACAGATCAGAGCTCTCTACAGGATGCAGAGATTGCAGTACTGAGCAACTTGGCACAGGTTTTTAACCTGTTGGACTCCATCAAGCAAATTCTAAATGTTCGACGACAAATGACGGACCCAGAGCAGACGCAAGTCCTCAGAACACTGACAAcattgGAACAGCAGTTAGAAGAACAAAAGATGCAGCAGTCCCTCAGCTGGTCATCTCAGTCACAGGCCCTCAGCAGTCTGGTTCTCCCCTCCACCCCTCCAGCCAAGCGTGCTCCCAAACGCCCCCGTCTCCAGCGTCCCGCCTCCACCACAGTACTCAGCACATCCATAGCTCAGCCTCTCACCCTCCAGCCACAGCAATTCACTGTATTCTCTCCCATCACCCTTTCTTCCATCGGCCAGTCATTCGCAGTGGCCAACCTCAGTCCGCCATCCAACACTGTAACCCTACACGCTCTACCCGCAGGCTCTCAGCTCTTCACACGAATCGCCGGAGGCTCTGATGGAAAAACTGAAGCAATCACACTCCATCCCGCGTCTGGGCTTACGCTGCTGGGAGCCACAGCCATGCAGGACCCCTCACAACTCGGGACAGTCGTAAGTCCGGTTGAGCTCGTCCAATTGACGCAGAAAGCGACTAATGCTGGTGTAACCCAAGACGGTCAGGTGGTCACAGGTACGGTAGTCATGCAAGAGGGCGTCGTCAGGGTTGTGCAAGAAGACGAAAATCAGGAAAACGCCACCCTGATCGAGATCGACCCAGCAACCGCTGACCAAAGTGTGAGTGTAATGGAACTGCAGCTTGAGGGCGATGAAGCGGCGGGTGCTGCGACCGTTGTGGAAGGAGGCGAGGAAGTGGTGCAGGGAGAAATGGAGGAGACAGGGGAGATACAGCTGGATGCCAATGGCCAGTTTCACAATTTGCCCATTGTAGTGGTGGAGGAAGATGAACAGGACGTTGGTAAAGCCAAATGAGACGACGGCACGCTCACACAAACCGTCCTCAGAGACTGACAGACCAAATCAGATAGGGACGGCCATTGTGTTGCCCTAGGtggagtgtgcgtgtgtgtgtctcattTTTTTCATTACTCATTTCCTGCACAGCTACGCTCAGCTCTTCAAGCCTGATGTGTCTCGTATTTGTAAGCGCAAGTTCAGTATTCCTTTTTTAACAAGCGAAAGCAACAATTAGTGATGTTTTGTTGGAACACATTCagtatttgcttttgttttcgaGTGTGGAAGAATAggcacttatttttttaattatcccTTTGTTTTGGTGCCAAACAGTCACACTGTAGCTATGGCCAAATTTACAGTTCGTGAATGCGTGATCAGAAACCCTCAGAGTTAGACTGATGCTTCAAACACTCCCATAATGTTCTCTATGTATTTTCTGACATCAGGGCACTAATGTTGATGATATTTTTAGCACTGTGGTTTTCAAGTCTGGTTCTGTGGACTCACAGCACCACTTTAACTGACAGACCATGTTCAAATCATGTCGTTTTCTGCTAATGATATGATGATAAAAACGCAGTGTGAGCCCCCAGAATCAGAGTTGAGAATTGAGCTGTTATCACACATAATGAAATGTGTGTTTAGAATATTTGTGAGTGGATCCTTGCGTGTCCTTCACTAAAAATAACACAGATCTTCCTTTCCCTTGGTAGAACGCGGGATTTGTGCATTTCAACGTCtgttacagttttgttttgaaCAATTGCAAGAAAACACTTGATTTGGAGGTATATAAATACAAAgttgttaattttaaaaaagaagttaATTTATTACAAGTAGTTATTTTTGATTGTTTACTCAACCTCATGTCATTCTGAACTCACAGAGCTTCTGTGGACCACAAATGGAGATGTTTAGCAGAATTTTCACACTTATGCAGTTTGCTGAAGaaattattttgctgcttgtttgaattaattaaaatgaattaatgccACAATTCTTGAATATTTTCCACAACTTTAATTTATTATCTTCTGTCAATTTAAACGGCAGgttattttattgatttgtattgtgtaacttttaattaaaatttagttttagaTAAGATTCGACGAGGGACGATtaagtgttgtttgtttgttgtttgagaTGAGCGTTAGTGTTTTATGTGTTGTTATGTGAAAATGTAGATGACGACATTCCCACCAGTCAGGACCACTGTTGGGTTTAGTTACagagtaactagttactgtaattcAATTAGTTTCTGCAGAAAAAAAGTTAAGTAAGGGATTATGTTCTTGTTATGATTATGATCATGTTATGTAAATtaattacttgccttaaatactgtacataaattcgagagttctgtataaatcaattcagaaaagaaaattgttttttttatgtatataaatgttttgttattcagATATTTATAgctcctatagaaaatattattttaaaagagtTTAATCTATATTTCCAACATCAAGTCACATAATTAAATAACTTTCATAATTAAGTAATTCTATTACTTTTcagacatacactgtaaaaaataatatgatcAATTAGCCCCAACCGcaaatgtttttaggtcattataacttattaaactaagttaatcttgttctaacttaattttataagtcaGTTTAGCATAAAAAATTAATGGACTCATAAGATAAATtggattcagcttaaaaatttaagacaaccaggattttttttttttaaagtgtagtaaTTGAGTCATCTTTACACAGCCGATTTAAGTTGGCCCTAAAGCAACATGTGTCTGCTCAGAATTCAGTGTAAGACGCTATATAATTTTGTGGTTTTATGCCATTTAGGGTTGGTTTATGTGCCTCTTTTGTGGTGTAAAGCTTTTAGAAAGGTAATTTAATtagtaatttgtaattatttattttttaaagaaacttacTCAACACTGGTTAAGACTCAGAGTTATACATGACCTTTTAAAAGTTTGGGTCCAGTCAAAAGTGTGACtgtattgtgtttttgtttattttattacatatcaCTATTTTTATTCAGATATAATTCATAAAATGGATCAAGAATCACAATGTTAAAAATGACTTTCAAATATTGGTTCATGATATCTACAAAAATActgagcaaaaaaaaagtttttaacattgattatagtttttttttatttttaatcataaaaaaatttgaatttctGATGGAACCTGAAAAATTCTTTGTCATTATTGCACATTATGTGTAATTTACAAAGTTATTTCACAATTTAATACTCCATTACTGTTGTTGCTGTCTTTTTCATTAAATGAATGCAGCCttggtaataaaaataaaataattattttaaaaacattattaaatccatttTTGAATAAGATGACTTATTCAGCTGTGATACCTCAAGCATTGCATGTCACCCTTATTTATTTAGCACACTACTGACAAATGTGACCTTTTACCACAAAGCTTGTTATGTTGCTcatatatgtatgtacatat
>TCONS_00027881
GATGACACCGACCGCGATCTAAACGTGTTGAAGGGGAGTGCAGGCTATGGCTGAGGCAGAAGTCACTGTGACCGTGGAGGACATGGTGGTGATGAAGAGCTCTGAGGAAGAGGATGTAGAGCCTGACAACCAAAGCAAGACTCAAATGATCCTCCAGCTGCAGCCAATGACAGCAGGGCTTGGAGATGAAAGCAATGAGACGGATGCTGCAGTTGTGGCAGTGGAAGAAAGATGATGGACTCGGGTCAGCTAGATTTTTATCAGCACAGCACTCTCTGCACCAATACCTGCCGCAGCACCAAGTTTGACCTGCTGATCAACAACACACGCTTCCCACCGGACGGCAGCGGCCTCAACACACCCATTACAGCTGCAGGCCATGTCACTGTGGGTAATGGTGGTCAAGCGGCCACAGTAGAGGAAAAGAAAGAAGACGTGATCGGTGCAGTGGAGTGGAGCCCAGATACCTCAGACAAAAGAGACACATCTGAAATCTCAGAGGAGACGCTGAGTTTCTGGAGGGGTATCGCTGAGGTGGGGCTGATGGGGGAGGTGGTGTCTAATATTCGCTCAGAGCTGTTGGGTCTGCTGAGAGGAGTTCAGCTACGCACAGATCAGAGCTCTCTACAGGATGCAGAGATTGCAGTACTGAGCAACTTGGCACAGGTTTTTAACCTGTTGGACTCCATCAAGCAAATTCTAAATGTTCGACGACAAATGACGGACCCAGAGCAGACGCAAGTCCTCAGAACACTGACAA
>TCONS_00027882
acttaacctgctttctcgagttcgataaacctgccattttgaaacggaaaacccagagttttcacttaaccttgTTTCTGAATTTGGCCccatgttgtccaacagcagcaatatttttcaaacagtagagtgtcctctgcttgccactgtatgtgggtggagtaatacacaagagtgaagaggcccgTGTTGAAGGGGAGTGCAGGCTATGGCTGAGGCAGAAGTCACTGTGACCGTGGAGGACATGGTGGTGATGAAGAGCTCTGAGGAAGAGGATGTAGAGCCTGACAACCAAAGCAAGACTCAAATGATCCTCCAGCTGCAGCCAATGACAGCAGGGCTTGGAGATGAAAGCAATGAGACGGATGCTGCAGTTGTGGCAGTGGAAGATGAGGTTTCTGCTGAAGGAGAGGATTTGGAGCTTGGTTATCCCATTACATGCGGCGAGAGTAAAGCCATCCTTCTGTTCAAGAAGTTTGTCTGCCCAGGAATCAATGTCAGATGTGTAAAGTATGAGGATCAGCTGATAAGTCCAAAGCAGTTTGTGCACATGTCTGGTAAAGCCACCTTGAAAGACTGGAAGCGAGCGATCCGGATGGGTGGAGTGATGCTCAGAAAGATGATGGACTCGGGTCAGCTAGATTTTTATCAGCACAGCACTCTCTGCACCAATACCTGCCGCAGCACCAAGTTTGACCTGCTGATCAACAACACACGCTTCCCACCGGACGGCAGCGGCCTCAACACACCCATTACAGCTGCAGGCCATGTCACTGTGGGTAATGGTGGTCAAGCGGCCACAGTAGAGGAAAAGAAAGAAGACGTGATCGGTGCAGTGGAGTGGAGCCCAGATACCTCAGACAAAAGAGACACATCTGAAATCTCAGAGGAGACGCTGAGTTTCTGGAGGGGTATCGCTGAGGTGGGGCTGATGGGGGAGGTGGTGTCTAATATTCGCTCAGAGCTGTTGGGTCTGCTGAGAGGAGTTCAGCTACGCACAGATCAGAGCTCTCTACAGGATGCAGAGATTGCAGTACTGAGCAACTTGGCACAGGTTTTTAACCTGTTGGACTCCATCAAGCAAATTCTAAATGTTCGACGACAAATGACGGACCCAGAGCAGACGCAAGTCCTCAGAACACTGACAAcattgGAACAGCAGTTAGAAGAACAAAAGATGCAGCAGTCCCTCAGCTGGTCATCTCAGTCACAGGCCCTCAGCAGTCTGGTTCTCCCCTCCACCCCTCCAGCCAAGCGTGCTCCCAAACGCCCCCGTCTCCAGCGTCCCGCCTCCACCACAGTACTCAGCACATCCATAGCTCAGCCTCTCACCCTCCAGCCACAGCAATTCACTGTATTCTCTCCCATCACCCTTTCTTCCATCGGCCAGTCATTCGCAGTGGCCAACCTCAGTCCGCCATCCAACACTGTAACCCTACACGCTCTACCCGCAGGCTCTCAGCTCTTCACACGAATCGCCGGAGGCTCTGATGGAAAAACTGAAGCAATCACACTCCATCCCGCGTCTGGGCTTACGCTGCTGGGAGCCACAGCCATGCAGGACCCCTCACAACTCGGGACAGTCGTAAGTCCGGTTGAGCTCGTCCAATTGACGCAGAAAGCGACTAATGCTGGTGTAACCCAAGACGGTCAGGTGGTCACAGGTACGGTAGTCATGCAAGAGGGCGTCGTCAGGGTTGTGCAAGAAGACGAAAATCAGGAAAACGCCACCCTGATCGAGATCGACCCAGCAACCGCTGACCAAAGTGTGAGTGTAATGGAACTGCAGCTTGAGGGCGATGAAGCGGCGGGTGCTGCGACCGTTGTGGAAGGAGGCGAGGAAGTGGTGCAGGGAGAAATGGAGGAGACAGGGGAGATACAGCTGGATGCCAATGGCCAGTTTCACAATTTGCCCATTGTAGTGGTGGAGGAAGATGAACAGGACGTTGGTAAAGCCAAATGAGACGACGGCACGCTCACACAAACC

Function

symbol description
gmeb1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human GMEB1 (glucocorticoid modulatory element binding protein 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-35 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human GMEB1 (glucocorticoid modulatory element binding protein 1).

Ensembl:

ensembl_id ENSDARG00000062060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027880 False 4345 mRNA 0.40 10 16064439 16089187
TCONS_00027881 False 760 nonsense_mediated_decay 0.52 7 16064463 16084101
TCONS_00027882 True 1987 mRNA 0.52 10 16068445 16086691

Neighbor

gene id symbol gene type direction distance location
XLOC_013963 snrnau11 coding upstream 2478 16061826 ~ 16061961 (+)
XLOC_013962 rab42a coding upstream 28292 16032383 ~ 16036147 (+)
XLOC_013961 ctps1a coding upstream 32936 16015881 ~ 16031503 (+)
XLOC_013960 foxo6b coding upstream 443472 15571290 ~ 15620967 (+)
XLOC_013959 ppp1r8a coding upstream 531924 15521997 ~ 15532515 (+)
XLOC_013966 ptprua coding downstream 133431 16222618 ~ 16657563 (+)
XLOC_013967 NA coding downstream 622639 16711826 ~ 16712299 (+)
XLOC_013968 CR318590.2 coding downstream 818522 16907709 ~ 16909487 (+)
XLOC_013969 MANEAL coding downstream 1170725 17259912 ~ 17277208 (+)
XLOC_013970 NA coding downstream 1264453 17353640 ~ 17354668 (+)
XLOC_013956 NA non-coding upstream 760606 15301688 ~ 15303833 (+)
XLOC_013955 NA non-coding upstream 1037097 15025916 ~ 15027342 (+)
XLOC_013953 NA non-coding upstream 1193208 14850817 ~ 14871231 (+)
XLOC_013944 BX530067.1 non-coding upstream 2230446 13833879 ~ 13833993 (+)
XLOC_013972 FO704764.1 non-coding downstream 1284445 17373632 ~ 17373686 (+)
XLOC_013976 NA non-coding downstream 1757481 17846668 ~ 17846933 (+)

Expression


Co-expression Network