XLOC_013967


Basic Information

Item Value
gene id XLOC_013967
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 16711826 ~ 16712299 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029883
CTTTTACACCGAAAGCGTTTGCAGCGAGCAACTGAGCAGCGTCCTTTGTGCAGAATGGAGATTGAGAAAAAGGAGAGGTTACGACGCAGAATTTGGGTGCACCTGGTCAACCAGCGAAGGAGACAATATGGTACATATtaccatcttgtggcagaattGCAACTGGATCGTGACCGCCACCGAAAATACTTCAAAATGAGCGCAGAGCAGATGGATCACATTCTTACACTGATTGGGGTGAATCTCTTAAGACAAACAACAAATTACAGGAGACCCATCGAACCCAAGAAACGTCTTGCTGTTACACTGAGGT
>TCONS_00027889
CCGAAAGCGTTTGCAGCGAGCAACTGAGCAGCGTCCTTTGTGCAGAATGGTGCGTATTGTTGACAGAAGGTAAAAAAGGTAATTGCTTTGTATTTGCTATTAAAGAGATTGAGAAAAAGGAGAGGTTACGACGCAGAATTTGGGTGCACCTGGTCAACCAGCGAAGGAGACAATATGGTACATATtaccatcttgtggcagaattGCAACTGGATCGTGACCGCCACCGAAAATACTTCAAAATGAGCGCAGAGCAGATGGATCACATTCTTACACTGATTGGGGTGAATCTCTTAAGACAAACAACAAATTACAGGAGACCCATCGAACCCAAGAAACGTCTTGCTGTTACACTGAGGT

Function

GO:

id name namespace
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048863 stem cell differentiation biological_process
GO:0033504 floor plate development biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0048869 cellular developmental process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007418 ventral midline development biological_process
GO:0021510 spinal cord development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005634 nucleus cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029883 False 313 lncRNA 0.46 2 16711826 16712299
TCONS_00027889 True 360 lncRNA 0.44 2 16711834 16712299

Neighbor

gene id symbol gene type direction distance location
XLOC_013966 ptprua coding upstream 54263 16222618 ~ 16657563 (+)
XLOC_013964 gmeb1 coding upstream 622639 16064439 ~ 16089187 (+)
XLOC_013965 CR385068.4 coding upstream 642723 16068970 ~ 16069103 (+)
XLOC_013963 snrnau11 coding upstream 649865 16061826 ~ 16061961 (+)
XLOC_013962 rab42a coding upstream 675679 16032383 ~ 16036147 (+)
XLOC_013968 CR318590.2 coding downstream 195410 16907709 ~ 16909487 (+)
XLOC_013969 MANEAL coding downstream 547613 17259912 ~ 17277208 (+)
XLOC_013970 NA coding downstream 641341 17353640 ~ 17354668 (+)
XLOC_013971 ube2e1 coding downstream 646551 17358850 ~ 17376041 (+)
XLOC_013972 FO704764.1 coding downstream 661333 17373632 ~ 17373686 (+)
XLOC_013956 NA non-coding upstream 1407993 15301688 ~ 15303833 (+)
XLOC_013955 NA non-coding upstream 1684484 15025916 ~ 15027342 (+)
XLOC_013953 NA non-coding upstream 1840595 14850817 ~ 14871231 (+)
XLOC_013976 NA non-coding downstream 1134369 17846668 ~ 17846933 (+)
XLOC_013977 NA non-coding downstream 1450543 18162842 ~ 18173519 (+)

Expression


Co-expression Network