G520002


Basic Information

Item Value
gene id G520002
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 31744 ~ 43714 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU596492
CTGAAGTGTAGTTGAGCTGTTGTGTGTTTGTGTCTCTGTATTCATGCAGTAAAATGGCAGAAGCCAGAATTTCAGTGGATCAGGATGAGTTCCTTTGTCCAGTGTGTCTGGATCTCCTGAAGGATCCAGTGACAACTTCCTGTGGACACAGTTACTGTAAGAGCTGTATTACAGGCTGCTGGGATCAGGAGGATCAGATGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTATCTAAAAACACCATGCTGGCTGAAGTGGTGGAGAAACTGAAGAAGAGAAAACTTCCTGCTGACTGTTACGCTGGAGCTGGAGATGTGCAGTGTGATGTCTGTACTGGAAGAAAACACAAAGCCGTCAAATCCTGTCTGGTGTGTCTGGAGTCTTACTGTCAAACTCATTTTGACCGCCATGAGGAGTTTCACTCACGTAAGCCACATAAAGTGACTGAAGCCACTGGACGACTGCAGGAGATGATCTGCCCGAAACACAACAAGATCCTTGAGGTTTTCTGCCGCACTGATCAGAAGTGTATATGTGTGCTGTGTACGATGGATGAACATAAAAACCACAACACTGTATCAGCTGCAGCACAGAGGACAGAGAAACAGAAACAGCTGAAGGAGATGCAGAGGTCGTTCCAGCAGAGGATCCAGCAGAGAGAGAAAGATCTTCAGCAGCTGAGAGAGGCTGTGGAGTCTCATAAGGTGAGTCTGGAGANNNN
>TU596493
AGTCACTTTCACCACCAACTGTTCCCAGGACCAGGAAGGACTTCGTACAATATTCCCATCAGCTCACTCTGGATCTGAACACAGTGAATAAACACCTCCGACTGTCTGAGAGGAACAGGGTGATTACTGTCATTCTCACAGAGCAGCCGTATCCTGATCATTCAGACAGATTTGATGGATATAATCAGCAGGTGTTGTGTAGAGAGAGTGTGTGTGGACGCTGTTACTGGGAGATTGAGTGGAGTGGTGATGTGTATATATCAGTGTCATATAAGAGCATCAGCAGGAAGGGATCGGGTAAAGAGTGTGTGTTTGGATCTAATGATCAGTCCTGGAGTTTGGTCTGCTCTTCCTCTAGATATGCATTAAGACAAAATCAGATAGAGACTAAACTCCCAGTAAAGCCCATCAGCAGTAGGATAGGAGTGTATGTGGATCACAGTGCAGGAACTCTGTCTTTCCACAGTGTCTCTGGAGACACAATGAGCCTCATCCACACAGTCCACGCCAAATTCACCCAGACACTCTATCCTGGGTTTAGGGTTTATAATGGATCATCAGTAAAACTGTGCTGATGTCACATGTATGTTCTGTTTTTCCCTTTTTGTCTGCCTGACTTCTAGGTTATGAGTCAGTTAATTATTGCAACCAGCTGTGACATTTAATGAATTGGAATAGATTGTAGATCAGTGGTATTGAAATGGAGGGCCGTGGAACATAATTGCGGCATTTTACCATTTCTACAGATACAAGTGATCAGTGCGTCAAAACAACGGAGTGGTTTACACCACAAGTGTTCAGGGTCGTTTATGATCTTTCAACGCTACATCCTGTATTTTTATCTAGAGCTAAATGCACTTCATTCAAGCCCTTTCCACTCTGTGCATGCTGCTTCTCTGTTCTCTATCCCGCTAAACACGTTAAACACATTAACAGCTGCAGATGACGTGGTTATTTTAACAGCAGCCCAGTTGTGAGCCTGACCAGACAGCAGCGAGATCATATATGCAACTTTTGATCTCTCCATTGCATAGGTCAGTGGCTGAAGCAAGAACATTACCTCACAATTAAAGATAAAAGGAGCGACAGTTGGTAGGCTCACCAAAATAAGCAGGAGGATTGTTGACTCGAGGTTCATCAGCGGAATTAGTGGCAGCTGACATTGGTGGCACGAGATCTGGGTCGTAACGTTGAATTCTTCAAACCGGTCTGAAAGCTCAGTGACTTGAATTGCGAGAGATTCCATGGAGAAATGGCCATTAACCAGCTCCTCCTCATGATGGTCCAGCATGGCTCCTTGAAGTTCCATGGCTGATCGGATAGAAGATTGTTCTGCTAGGTCTATGTTTGGCCAGTGTGTGGTGTGACGATCTGAGGAAGGAGGGCCCAACTGAGATCAAACACCATCCAATAAAACAATAAAACTCACTAGTCTAATCCAACAAAATGGCATAGGACACCATGTTGCCCAAACTCGTGTTTCGTGTTTAGTCTTGATTTAATCCTCTTCGAATGTCTTAACCAACTATAGGTGTTATGTTAAAAGAAAATGTATTATTCTATTTTTAAAGTACTTTGGAGTAAAGACTACCAAATCAGACACCATCATAAATCAGGCAAATTAGGTCATAAAAAGAGACAAAGAAAACGTTTTGCCCACTCAAAATGCACCTTCGCCATTGGCCGGTTCATCCAAGGAAGCGTGTAGGCATACTTGTCCTTAAAAGACAACACCAAACCTGGGCCCGTATGTATAAAACTTCACAGAAATGCTCTTAAGAATAAACTTAAGTTTTGACTTAAGTGTCAAAAAATTCTTAGTAAAGAGTAGGAGTTTTCTAAGAGTAGGAGACTTTTATAAAGAAGCTAAAAGCAACTTTTAGTAAAGTTTAAGATTAATTCTTAAGTGCTGACTTAAGTGTTGTGAACTAAGGACTACAATGAGGTCAACTCAAAATGGCCGCTCTCAACCTCTGAATCAGCCAATAGCGAGCGTGCAAGGGTGAATAGCACCAATAATTTAATATTATAAAAAAAAAAAATCATTTAAAAAGACACTGAAACATTTTAATATTTACATTTATTTTTAAAAATAGCTTTGCATTGTGCAAAATTATCACAAGTTAGTATTGATGGTGTGGAATCTTTTTCTATTGATATGTCTCCTCATTTACAATTGGAGCAATGATGTGTCATGAGCTGCCAAAGAGTAGTGCCCAAATGTGATGTCCAGCCATATGAAAATGGACATCTTCAACCTTAATTCAAATATTTTTAAAAATGTGTTAACATACATAACATACGTCATCTTTACAGGATGTGGTATACACTACACTTGAGCGTACAGCACGTTTGTGATTTTATGTCACCTTATGTAAACTTCATGGCCCCTAGAGATTTTCCAAGATCAACAATTTTCTGCTTTTTATTATATATTGTCTTATAATATAAATCTTTATCAAATTGATTGGAAGAGAACACTCAATTTCTCTTGACATCTGAAACCTGTAGTTGTAGTTTTCCTCTTCTTCTTCTTTTTTTTTTTTTTGCCAGTAACTACAATACATTATATAACTCCAATACATCATATCTTCATTGGAAAGCGTGTGTCTCCTCTTCTTTCTGCCATCTTGTTACTCTTAACTAGGTTAAGACGCCTCTCCTAAATAATTTAGGAGCTGAGACCTAGACTTGACTCTAAGGAACCTTTATGAATCACACTTATTCTTAAGTCTAAGAATAAGAGTAAAATTATGTCATTCTTAAAATTTTGACACACTTAAGACTAAAATTTTACTCTGAGCAGCTTTATACATACAGGCCCAGGTCTATTGTCTCTTGCCATCTCTTGGGTGGTGATATTAATAAAATCTTATTACAGAGGGAAGCTTTTTATATTTACACATTAAATACTCATTTTCCTAAAGGTTTGAATTTGGATTTTGATTTAAAACCTTTTTTGTAAATTTATATTTTTTTAAAATGTATTTCTTTATGATTGTATTTTCCCTATGACTGTATATGATTTAATTTGTTACCAGTGTTGTTTGGATTATTGGGTGATGAGTATGATGACTTGTAACAAGTGTGACTGATCATGTTGATGCAATTAATTGTATCAGGTGTTACTGACTATGTTGAGAAAATGATAAGTAATTGCCATTTTTTCACTATTTACTGTTTGCCTGACCTGACGAAGACCTCTTTGGTTGAGACGTTGTCTTTTTAATAAATTTTGAGAGCAGCAGTGGCAGTGTGCCGTTTTTTGTTTGTTTATCTATTAGTGACTCTGATGATCGAGCACCTGTCCTTAGTTGAGCTGGGATGTGCGCATATTACTCTCTTTTCTAATGTTCCGTAGGTGGGGCCACGACGTAGATGGCCACTGTAACTTGCAGTAGGCAGGTGTGGTGAGTGTGGCGTGAGCATGAGTACCGCCACTTTTTAGTCTGTTTGGTGCAGCAATAGACTGTTGTTACGAACATTTGTCCTGTCCTGTACGATTTTGTTTATTTCTTTGATTTATTCTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU596492 False 745 TUCP 0.47 2 31744 32979
TU596493 True 3532 lncRNA 0.38 2 39907 43714

Neighbor

gene id symbol gene type direction distance location
CI01000364_00151094_00203772 NA coding downstream 107104 150818 ~ 203857 (+)
CI01000364_00263052_00264410 NA coding downstream 219271 262985 ~ 264747 (+)
CI01000364_00287825_00289294 NA coding downstream 243333 287047 ~ 291072 (+)
CI01000364_00294611_00295771 NA coding downstream 250687 294401 ~ 295950 (+)
CI01000364_00382475_00385399 NA coding downstream 338761 382475 ~ 386117 (+)
G520020 NA non-coding downstream 12608 56322 ~ 119677 (+)
G520022 NA non-coding downstream 29362 73076 ~ 106997 (+)
G520008 NA non-coding downstream 191570 235284 ~ 236338 (+)
G520068 NA non-coding downstream 204727 248441 ~ 251073 (+)
G520004 NA non-coding downstream 211398 255112 ~ 260688 (+)
G520002 NA other upstream 6928 31744 ~ 43714 (+)
G520007 NA other downstream 712 44426 ~ 45846 (+)
G520009 NA other downstream 197607 241321 ~ 324231 (+)
G520012 NA other downstream 206586 250300 ~ 255006 (+)
G520013 NA other downstream 265654 309368 ~ 337107 (+)

Expression


Co-expression Network