G520098


Basic Information

Item Value
gene id G520098
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 138455 ~ 221553 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU596646
GGATAGGGAATGATTCAGACAGAGTAAATGTGCTTTCCATTGACACGAATGAAGTCTGGTTTCACGTTAGTGTTCATTATATACACATGAACATTATATACTTGTAGATGTGTGTGTGGTTCTAAATGAAAACAAATAAAAAACATAAATAACAACATTGTGCAATATCCATCTATATTCATTCCAATAGCTTAATAGTAACACATGCAATTGTGCAAACGTCACAAATTATACTGAATATAACTGCTTAATCAAGCCAAAGTATCAAACTATACAATATAGATAAATAATATCTGCACTAGATCCACAAATCGTTAATATACACAGAGAAACATAAGCCATAAATATCACATATCAGCGCATCAATATCCACTAGAGATGCGCATACAAGATTATTCTGTGATCTATGCTGCATTTCTTATAATAATCACACTCTTCATGTCTGTTGATTTCCACAGTCTCTTTCACCAACATTGTTCCCAGGACCAGGAACGACTTCCTACAATATTCTCATCAGCTCACTCTGGATCTGAACACAGTGAATAAACTCCTCCGTCTGTCTGAGAGGAACAGAGTGATTACTAACACTGACACAAAGCAGTCGTATC
>TU596650
GCCAAGCTCTTGCATCTGTTGTGATTCTGCTGAAGAAAGAAAAACTCCTGGTGAAGCGACTGAGATCCATGTGACACACTATTATAAAGATGGAGTTTATTAAAGAGGAGATTGAAGATATGAAGATGGAGTTTATTAAAGAAGAGATTGAAGATGTGAAGATTGAAGAAACATTCAGAGTGAAACATGAAGATACTGAGGAACAAACAGGTTGGTTTCATTCATTTCATGCTTTCAAAGCGTCTTATTAAAAATGCCTGGCTTTTTTTTTTTTTTTTTTTTAGAAAAAATCATTTGCAGGGAAATCTTTAAAATGAATATGATTGTTTTAAAAAATTTTATTTGACATTCCAACCTTAATTTACACAAACAACTACACATTCGTACTAGACATACACATACAAACCAACAACTGGAGAAGTCTCAGAAACATACAAAACAACTGAAACATTCTTTCAAACCACATTCAGACATCATAAATGCAAGTTCACTGTAGTCTACTGAAAAGACTTTGTACTTTTGGTGACATCTTATGCTGATCAAGAGAGCCAAAGAAGGTTTACAATGAACAATAATGTCAAATTTACTTTCCCAAACCCTAAAAGTTTACAATGATGTACAAACTATTTACAAGCCCAAGCAAACAGAGTTAAAAGGGGAGTTCAAATCAGTGTCTGTAACTAGGCAATAGGGTCAAAATACCAGTTTCCTAGTTAAAAACTGTAATTCTTTTTCAGAGAACCAACCATGTTCACCCTACTCTTAAGTCGAAATGTGTCTAAACACACAGTCATAAACCCACAATTATCTCCTCACAACAACATAATCTGCCCTTTCAAAGGAAGTAATATCAGGGTTTTTAAGGTGTGCCTGGAATCGAATGCACCAATCCAGATGTGCCAGTCATTAGCCTGCAGGAGCCAATCAGCACTGTCCCTGGACACAAACACTTCCAAAACAAAAGAGAGTAAGAAAAAAGTGAATACAAAACAAAGGGTTGTAACATTCTACAAATTCTGTTAATTACGCTTTCAACGCTAACAACGTTAACTCATAAACAACCAAAACACTCGTTCAAACGTAGCATTATCGGGTATATTAATTCAAACAAATTTCCAACCTACCTTTCATTTGAGTCTGGGAGAAAAAGAAAATGGCAGTCGAGCAGAAAGTTCAAGACAGACTTGTGCATCATGACGTCCTTAAAGGGAAATTATACGTTTGCTGAAAGTGAAATATTTGAGTAGTTGTGAATTTCTATGTGTTTAAGCTGAAAGAGTGTACAATACCGAGTTACAATTCGGAAAGCAGAAAGACAAAGTAAATAGTCTTAAATAGCTATAGTAATCCAACATACACCCATATTCACTTTTTACAGTGTAGGTTTTGGTCTTTTAAACCACCAATTAGCATGTTACTTTGGAAATTTGAACAAAGGCAAAGTGAAAGTGGTTGCGTGCATGAAAAGTCACAAAAAAACAGACTTACATGAGAGCACTCTCCGACAAGGCATAACTTTGGCATAACACAAACCAAAAACAAGTATGAAACAGCGGTACACATCGAATGAGGCATTAAAATGTAGCCGTTAAAATTCAATGTCCCGGTGGGATCAATTCCACTTCAATACACCAGAAGATGATAAAAGCAGGTAATTTTTTTTAACTTCAATTAGCAGTTTCTGTGCAACGATGGGCCTTAAATCCTGACTGAAATTCTTCACACATACTGTTTTTTTGCAAAACTGAACATGGATCAATTCAGAAAACTCTATTTTACCGATATTTTGAACATAAACAGTATTATGTATGTTGGTTATTTTTAATCAACATATTTAGAGTTTCCTTGGCTGTGTGTTTGGGATCATTGTCTTGCTGAAATGTCCACCCTCGTTTTATCTTCATCATCCTGGTAGATGGCAGCAGATTTTTATCAAGATTTCTCTGTACATTTTTCCATTCATCCTTTCTTCAATTATATGAAGTTTGCCAGTACCGTTTGCTGAAAAACAGCCCCACACCATGATGTTCCCACCTCCAAACTTCACTGTTGGTATGGTGTTTTTGGGGTGATGTGCAGTGCCATTTCTCCTCCAACATGGTGTCTATTATGGAATCCAAACAGTTTGGTTTTGGTCTCATCTGACCAGACTATATTCTCCCAGTATTTCACAGGCTTGTCCAAATGTTGTGCAGCAAACTTTAAACAAGCCTCAACATGCTTTTTCTTCAGCAATGGAGTCTTGCGTAGTGAGCGTGCATACAGGCCATGGCGGTTGAGTGCATTACTTATTTTTTTCTTTGAAACAATTGTACCTGCTAATTCCAGGTCTTTCTGAAGGTGCCAACAAGTGGTTCTTGGCTCTTGGACAACTCTTCTGATAATTCTTTTCACTCAGAAATCTTGTGAGGAGCACCTGGTCGTGGCCGGTTTATGGTGAAATGATGTTCTTTCCACTTCTGGATTATGGCCCCAACAGTGCTCACTGGAACATTCAGAAGTTTTGAAATCCTTCTGTAACCAATGACATCAGTATTGTTTGCAACAATAAGGTTGCGAAGGTCTTGAGAGAGGTCTTTACTTTTACCCATCATGAGATGTTTCTTTTGTGACACCTTGCTAATGACACACCTTTATATTGGCCATCAGTTGGGACTGAATCAGCTGATATTAATTTGCACTGACAAGGGGCAAGATTGGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU596646 False 608 lncRNA 0.35 2 138455 139295
TU596650 True 2703 lncRNA 0.37 2 218167 221553

Neighbor

gene id symbol gene type direction distance location
CI01000364_00110528_00118790 NA coding downstream 19665 110429 ~ 118790 (-)
CI01000364_00081223_00107594 NA coding downstream 30662 81180 ~ 107793 (-)
CI01000364_00037534_00041491 NA coding downstream 94736 36674 ~ 43719 (-)
CI01000364_00002233_00008090 NA coding downstream 130247 2233 ~ 8208 (-)
CI01000364_00373309_00374559 NA coding upstream 151756 373309 ~ 374559 (-)
CI01000364_00391142_00398789 NA coding upstream 169398 390951 ~ 398930 (-)
CI01000364_00455879_00458332 NA coding upstream 234326 455879 ~ 458332 (-)
G520128 NA non-coding downstream 67082 70819 ~ 71373 (-)
G520103 NA non-coding downstream 93320 14969 ~ 45135 (-)
G520159 NA non-coding upstream 2755 224308 ~ 225359 (-)
G520107 NA non-coding upstream 10501 232054 ~ 309930 (-)
G520108 NA non-coding upstream 28571 250124 ~ 270995 (-)
G520099 NA non-coding upstream 41455 263008 ~ 264764 (-)
G520221 NA non-coding upstream 203170 424723 ~ 425045 (-)
G520248 NA other upstream 229480 451033 ~ 451562 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000090 CR855320.2 coding NC_007112.7 CM002885.2 7988052 ~ 7989314 (+)
striped catfish (Pangasianodon hypophthalmus) G413192 NA non-coding NW_022995288.1 VFJC01000056.1 23875 ~ 30024 (+)
tiger barb (Puntius tetrazona) G176084 NA non-coding NW_025047824.1 JAEQBD010000169.1 1591265 ~ 1591971 (-)
mexican tetra (Astyanax mexicanus) G268650 NA non-coding NW_019172027.1 APWO02001625.1 181826 ~ 182688 (+)