Gene
RNA
| Item | Value |
|---|---|
| gene id | G520146 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000364 |
| NCBI id | null |
| chromosome length | 520240 |
| location | 180328 ~ 197248 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU596727 | True | 352 | lncRNA | 0.39 | 2 | 180328 | 197248 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000364_00110528_00118790 | NA | coding | downstream | 61538 | 110429 ~ 118790 (-) |
| CI01000364_00081223_00107594 | NA | coding | downstream | 72535 | 81180 ~ 107793 (-) |
| CI01000364_00037534_00041491 | NA | coding | downstream | 136609 | 36674 ~ 43719 (-) |
| CI01000364_00002233_00008090 | NA | coding | downstream | 172120 | 2233 ~ 8208 (-) |
| CI01000364_00373309_00374559 | NA | coding | upstream | 176061 | 373309 ~ 374559 (-) |
| CI01000364_00391142_00398789 | NA | coding | upstream | 193703 | 390951 ~ 398930 (-) |
| CI01000364_00455879_00458332 | NA | coding | upstream | 258631 | 455879 ~ 458332 (-) |
| G520143 | NA | non-coding | downstream | 29659 | 148351 ~ 150669 (-) |
| G520128 | NA | non-coding | downstream | 108955 | 70819 ~ 71373 (-) |
| G520103 | NA | non-coding | downstream | 135193 | 14969 ~ 45135 (-) |
| G520159 | NA | non-coding | upstream | 27060 | 224308 ~ 225359 (-) |
| G520107 | NA | non-coding | upstream | 34806 | 232054 ~ 309930 (-) |
| G520108 | NA | non-coding | upstream | 52876 | 250124 ~ 270995 (-) |
| G520099 | NA | non-coding | upstream | 65760 | 263008 ~ 264764 (-) |
| G520221 | NA | non-coding | upstream | 227475 | 424723 ~ 425045 (-) |
| G520248 | NA | other | upstream | 253785 | 451033 ~ 451562 (-) |
