G520008


Basic Information

Item Value
gene id G520008
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 235284 ~ 236338 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU596514
AAATGTCTTAGGAACGGATGCAGGGATCATTTTCTCTTGACATGATAATCACACTCTTCATGTCTGTTGATTTCCACAGTCACTTTCACCAACATTGTTCCCAGGACCAGGAACGACTTCCTACAATATTCCCATGAGTTCACTCTGGATCTGAACGCAGTGAATAAACTCCTCTGTCTGTCTGAGAATAACAGAGTGATTACTAGCACTGACACAAAGCAGTCGTATCCTGATCATCCAGACAGATTTGATGGATCGAATCGTCAGGTGTTGTGTAGAGAGAGTGTGTGTGGACGCTGTTACTGGGAGATTGAGTGGAGTGGTGATGTGTTTATATCAGTGTCATATAAGAGCATCAGCAGGAAGGGAGAGGATAATAAGTGTTTGTTTGGACGTAATAATCAGTCCTGGAGTTTGTACTGCTCTTCCATCTTTGGTTGCTCATTCAGACACAATAACATAGTGGCTAAACTCCCAGTAATGTCCATCAGCAGTAGAATAGGAGTGTTTGTGGATCACAGTGCAGGAACTCTGTCCTTCTACAGCGTCTCTGGAGACACAATGAGCCTCATCCACACAGTCCAGACCACATTCACTCAACCGCTCTATCCTGGGTTTGGGGTTTATGTTGGATCATCAGTGAAACTGTGTTTATGAATCAGAATAGACTATAGAGAGATTCTACCCATAATGCTTTGAGCTCATGATAAATCAGTAACAGTGAGATGTTATAGAATCTCTTATTTTCTCTTCATTACATTAATACTACAGCTGAACTTCTGTCAGTGAAATAACATGTCAGAATAAATGTGTGTAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU596514 True 819 lncRNA 0.41 2 235284 236338

Neighbor

gene id symbol gene type direction distance location
CI01000364_00151094_00203772 NA coding upstream 31427 150818 ~ 203857 (+)
CI01000364_00263052_00264410 NA coding downstream 26647 262985 ~ 264747 (+)
CI01000364_00287825_00289294 NA coding downstream 50709 287047 ~ 291072 (+)
CI01000364_00294611_00295771 NA coding downstream 58063 294401 ~ 295950 (+)
CI01000364_00382475_00385399 NA coding downstream 146137 382475 ~ 386117 (+)
CI01000364_00400175_00427556 NA coding downstream 163036 399374 ~ 427576 (+)
G520020 NA non-coding upstream 115607 56322 ~ 119677 (+)
G520022 NA non-coding upstream 128287 73076 ~ 106997 (+)
G520005 NA non-coding upstream 183876 20274 ~ 51408 (+)
G520068 NA non-coding downstream 12103 248441 ~ 251073 (+)
G520004 NA non-coding downstream 18774 255112 ~ 260688 (+)
G520089 NA non-coding downstream 97563 333901 ~ 334264 (+)
G520206 NA non-coding downstream 138239 374577 ~ 374830 (+)
G520207 NA non-coding downstream 139359 375697 ~ 376328 (+)
G520007 NA other upstream 189438 44426 ~ 45846 (+)
G520002 NA other upstream 202305 31744 ~ 43714 (+)
G520009 NA other downstream 4983 241321 ~ 324231 (+)
G520012 NA other downstream 13962 250300 ~ 255006 (+)
G520013 NA other downstream 73030 309368 ~ 337107 (+)

Expression


Co-expression Network