G520004


Basic Information

Item Value
gene id G520004
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 255112 ~ 260688 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU596500
AGGACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAGATGCTGAGCTGGAGCAGCTTTCACACGCACAGGATCACATCCATTTCCTGCAGGGTTTCCAGTCTCTCTCAGCTCCTCCTGAATCTACAGACGTAAATGACGATCCCTTCAGTTCTCTCTCCTCTTTTGATGGCGTGAGAGAATCTGTCCATCAGCTGAAAGACAAACTGGAGGATTTCTGCAAAGAGGAGCTCAAGAAGATCTCTGACAGAGCCACTTTCACCAACATTGTTCCCAGGACCAGGAACGACTTCCTACAATATTCCCATCAGCTCACTCTGGATCTGAACACAGCACATAAACGCCTCCGTCTGTCTGAGAGGAACAGAGTGATTACTTACACTAACACAGAGCAGCCGTATCCTGATCATCTAGACAGATTTGATATTTTGTGGCAGGTGTTGTGTAGAGAGAGTGTGTGTGGACGCTGTTACTGGGAGATTGAGTGGAGTGGTGTTATGTTTGGTGTGTTTATATCAGTGTCATATAAGAGCATCAGCAGGAAGGGACGGGGTAATGAGTGTTGGTTTGGATATAATGATCAGTCCTGGAGTTTGAGGTGCTCTTCCTCCAGTTACTCATTCATACACAATAAGATAGAGACTAAACTCCCTGTAAAGCCCATCATCAGCAGTAGAATAGGAGTGTATGTGGATCACAGTGCAGGAACTCTGTCCTTCTACAGCGTCTCTGGAGACACAATGAGCCTCATCCACACAGTCCAGACCACATTCACTCAACCGCTCTATCCTGGGTTTTATGTCGGTTATACTGGATCATCAGTGAAACTGTGTTGATGAATCAGAATAGACTGTAGAGAGATTCTACCCATAATGCTTTGAGTTCATGATAAATCAGTAACAGTAAGATGTTGTAGAGTCTCTTACTTTCTCTTCATTACATGACAGTTTTTCTCAATCGATTTGACATTTCTCCAAAGTAATGTAACTGCTCTCAAAACAGTTAACACAGTGATCTAAACACACTCTTACCCCAGCCAAACAGTTCAACTTTAATGCAAAATAAAGCACTGCATTTTTTTCTAGTAATGCATTTATTAAGTAAATACTACAGGTGTATTGTCTATTGATTTTAGAACATTTTCAGCTGTGGATGTACAAATACACTAATGAAAATACATGTTTATTGTAATGTTTGTCCAACAGGTTTTGTTATATGGGTCATTGACAAAGCTTCAAAAAAGGTATTTTTAAAAAATCTTTTCAAAACTGATGAAATGCACATTTTTGAGTCTTGAACAATGTGTTTAAACAGGTTACATAACATTTCAAAGTGTTTAAATTCTTTTTTTTTTTTTACTTTTTCGTCAGGCGGTACAACCAAATGTTTGTAAATATATATTATATTATTGTACGACCTGACATGGAAACATAGGTGTACCAACCTACCCATACTTGAAATTAGCCGTTTTATCAGTATTTGAGAGAGATCTACAAACCTTTTCACTCTGCCACAATGATCTGTTGATTTCCTCTGGATGTCGCATTATCAGACTTAATGGTATTATCTTGTCAATTCATATAAAACAGCTATATTTGCAGTTGTGCCACTCTGGCTGAATCCACAATTCCTCCTATACCCTGCTTTCCACTACACCAATGCCCTCCACCAATCTCTTATCCTCTCCTCCTTTTTTACATCCTCCTCTCTCCTCATATGACCTCCCTCTATCTGTTCCTTTCCTTCTTATTACACCCCTTCCGCTACCCACACCACCTTTACACTTAACACTTATTTCTTTATTTTCCCCTTCTCTTGCATATTCTTATATTCATATTCTTTTCTTGCTCTATGAATACTTTCCCTTTTATACTTTCCCTGTTACATTGCGCAGTTGTGATAAATGTGTAAACAGATAGGAAAACTGAATTTCCTGTGTTGTGTGTATTATTAACAAAGCAGTTATCAGTTTGGGGCCAATTGAAAACATACAAAGTGCATTTGATAATATGACAAATTCCAGAGTTTTGTTTATTGTGTTTGGACAAATAGTACATAAATGTTTGTGAATTGTGTAAAGCCAATTTTAAAAAAAAACTGCGATCATTTTTGATTGGATGTATTATGAAAACATTGGAGAACTTTGTGCGTAGTGTTTTGAGAAAATGATTCACATGATTTGCAATTTGTGTGAAATGAATGAAAACGTACAATATGTTCAGGACAGTTACAATGTGTTCAGATCACTGTGTTAACCTTTGAGAACAGTTATCCAAGTTTGGAGAAATGTGTCAAATCTATTGGGAAAAACTAATACTACAGCTGAACTTCTGTCAGTGAAATAACATGTCAGAATAAATGTGTGTAATGAATCCTCATATAGACAGTAAGATCAGTGTGTGTTTGTGAGTCATGATGAGTGACGGTGTGTATCTGTGCTTTACTCAAGCTCTGTGATTTTCCATCTAACAGAACTGCTTGCTATAATACAGGAAAAATATAAATTATGTTATGAAGGGTAAAATGAGTGTTGCACAATGTATTTTTTATATTTATGCATGTGTTCACATGGAACTGCTGTGTATTCTTTTTGTGTGGATTGTGGCGTTTTTCTTTCTTTTCCAAGCAGTATTCCCTAAGCCACACCTCTATTCTTCTAATTACATCAATTGAACTAATTGGTGATGGACGTTGAGTTGGCGCGTAAATATGTTCTCTTATAAAAGGACAGCTGTGACTGGGACACAAGAGAGCAAGTACCACGGTGGAAAGGGTAAAGGGGCAACACCATGCGGTCGTATCCGGAAACTGGTCGACGAGAGAACGAGCGAGAGAGTCACGTTTGCGTCGGCATCTAGCAGTGAGTGTGTTGCATGTGGTAAGACGGCCTATGGCCATGTGAGTGCACAGCTTTCTGTAGACGAATAAAGGCGGATGAGCTGGCGGTTCGGTGACGCAGATGCCTATCAGAGGCTGAACTGAAGCTGGACTGTCTACCGAGTTTGGACTTTTAATGTTTGTTTTCTTTCTTTTTTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU596500 True 3049 lncRNA 0.39 4 255112 260688

Neighbor

gene id symbol gene type direction distance location
CI01000364_00151094_00203772 NA coding upstream 51255 150818 ~ 203857 (+)
CI01000364_00263052_00264410 NA coding downstream 2297 262985 ~ 264747 (+)
CI01000364_00287825_00289294 NA coding downstream 26359 287047 ~ 291072 (+)
CI01000364_00294611_00295771 NA coding downstream 33713 294401 ~ 295950 (+)
CI01000364_00382475_00385399 NA coding downstream 121787 382475 ~ 386117 (+)
CI01000364_00400175_00427556 NA coding downstream 138686 399374 ~ 427576 (+)
G520068 NA non-coding upstream 4039 248441 ~ 251073 (+)
G520008 NA non-coding upstream 18774 235284 ~ 236338 (+)
G520020 NA non-coding upstream 135435 56322 ~ 119677 (+)
G520022 NA non-coding upstream 148115 73076 ~ 106997 (+)
G520005 NA non-coding upstream 203704 20274 ~ 51408 (+)
G520089 NA non-coding downstream 73213 333901 ~ 334264 (+)
G520206 NA non-coding downstream 113889 374577 ~ 374830 (+)
G520207 NA non-coding downstream 115009 375697 ~ 376328 (+)
G520208 NA non-coding downstream 116013 376701 ~ 376969 (+)
G520012 NA other upstream 106 250300 ~ 255006 (+)
G520007 NA other upstream 209266 44426 ~ 45846 (+)
G520002 NA other upstream 222133 31744 ~ 43714 (+)
G520013 NA other downstream 48680 309368 ~ 337107 (+)

Expression


Co-expression Network