G520013


Basic Information

Item Value
gene id G520013
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 309368 ~ 337107 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU596526
TGAAGTGTAGTTGAGCTGTTGTGTGTTTGTGTCTCTGTATTCATGCAGTAAAATGGTAGAAGCCAGATTTTCTCAGGATGAGTTCCTGTGTCCAGTGTGTCAGGATATCCTGAAGGATCCAGTGACCACTTCCTGTGGGCACAGTTACTGTAAGAGCTGTATTACAGACTTCTGGGATCAGGAGGATCAGATGAGAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTAGCTTTAAACACCATGCTGGCTGAAGTGGTGGAGAAACTGAAGAAGACTAACCTTCCTGCTGACTGTTACGCTGGAGCTGGAGATGTGCAGTGTGACGTCTGTACTGGAAGAAAACACAAAGCCGTCAAGTCCTGTCTGGTGTGTCTGGAGTCTTACTGTCAGAATCACCTTGATCAACATGAGAATTTGCTTAAAGGAAAGAGACACAATCTGACTGAAGCCACTGGACGACTGCAGGAGATGATCTGCCAGAAACACGACAAGATCCTTGAGGTTTTCTGCCACACTGATCAGAAGTTTATATGTGTGATGTGTATGATGGATGAACATAAAAACCACGACACTGTATCAGCTGCAGCACAGAGGACAGAGAAACAGCACCAGCTGAAGGAGACGCAGAGGTCGTTCCAGCAGAGGATCCAGCAGAGAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU596526 True 679 TUCP 0.47 3 309368 337107

Neighbor

gene id symbol gene type direction distance location
CI01000364_00294611_00295771 NA coding upstream 13418 294401 ~ 295950 (+)
CI01000364_00287825_00289294 NA coding upstream 18296 287047 ~ 291072 (+)
CI01000364_00263052_00264410 NA coding upstream 44621 262985 ~ 264747 (+)
CI01000364_00151094_00203772 NA coding upstream 105511 150818 ~ 203857 (+)
CI01000364_00382475_00385399 NA coding downstream 45368 382475 ~ 386117 (+)
CI01000364_00400175_00427556 NA coding downstream 62267 399374 ~ 427576 (+)
CI01000364_00458726_00460323 NA coding downstream 121619 458726 ~ 461629 (+)
CI01000364_00471523_00472629 NA coding downstream 134416 471523 ~ 472821 (+)
CI01000364_00512592_00513897 NA coding downstream 174724 511831 ~ 514181 (+)
G520004 NA non-coding upstream 48680 255112 ~ 260688 (+)
G520068 NA non-coding upstream 58295 248441 ~ 251073 (+)
G520008 NA non-coding upstream 73030 235284 ~ 236338 (+)
G520020 NA non-coding upstream 189691 56322 ~ 119677 (+)
G520022 NA non-coding upstream 202371 73076 ~ 106997 (+)
G520206 NA non-coding downstream 37470 374577 ~ 374830 (+)
G520207 NA non-coding downstream 38590 375697 ~ 376328 (+)
G520208 NA non-coding downstream 39594 376701 ~ 376969 (+)
G520222 NA non-coding downstream 88331 425438 ~ 425708 (+)
G520012 NA other upstream 54362 250300 ~ 255006 (+)
G520007 NA other upstream 263522 44426 ~ 45846 (+)
G520002 NA other upstream 276389 31744 ~ 43714 (+)

Expression


Co-expression Network