G520248


Basic Information

Item Value
gene id G520248
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 451033 ~ 451562 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU596843
AATATTTGGACATTGCTTATCATTCAGACTTGCCGGACTGTGCGCTGATAGACTTTTTCTGTGAGGGCATTAATCAGCCACTCAAATCACAACTCATTCGTGAGGGACCCCGTTCATCTCTAAGTCTGAATGTTGGCTCTCCGTTTACTGTGGGTGTCGCGGAGGAATGCGACACCTCGTCTGGTCGCGTAATGGCTGCCGCGCCAGATGACACTCACAAAATGGCGGCCACCACTACTACAATGCCAAGTCAAGTCCAAGTTAAACTTCCCGAGTCACGTCCCATCTCCGCTGATCTTCTAGATTTACATCACGTCTCTGGATCTGTTTGGGAGCGGAGTGGGTTACGTTCCAGTGTGGCTGATCCACCGCTGACTTCAGCACGAGCGGCTGGCATTCCTAAGCCTCCGCCGGCCGCTTCGCACTCAAGCCCGCTGGCCGCTACGCCCTCAAGCTCGCCGGTTGCTACGCCCTCAAGCTCGCCGGTTGCTACGCCCTCAAGCTCGCCG
>TU596844
AATATTTGGACATTGCTTATCATTCAGACTTGCCGGACTGTGCGCTGATAGACTTTTTCTGTGAGGGCATTAATCAGCCACTCAAATCACAACTCATTCGTGAGGGACCCCGTTCATCTCTAAGTCAGTTTCTGGACTACGCTTTATTGAATGTTGGCTCTCCGTTTACTGTGGGTGTCGCGGAGGAATGCGACACCTCGTCTGGTCGCGTAATGGCTGCCGCGCCAGATGACACTCACAAAATGGCGGCCACCACTACTACAATGCCAAGTCAAGTCCAAGTTAAACTTCCCGAGTCACGTCCCATCTCCGCTGATCTTCTAGATTTACATCACGTCTCTGGATCTGTTTGGGAGCGGAGTGGGTTACGTTCCAGTGTGGCTGATCCACCGCTGACTTCAGCACGAGCGGCTGGCATTCCTAAGCCTCCGCTGGCCGCTACGCCCTCAAGCTCGCCGGTTGCTACGCCCTCAAGCTCGCCGGTTGCTACGCCCTCAAGCTCGCCG
>TU596845
AATATTTGGACATTGCTTATCATTCAGACTTGCCGGACTGTGCGCTGATAGACTTTTTCTGTGAGGGCATTAATCAGCCACTCAAATCACAACTCATTCGTGAGGGACCCCGTTCATCTCTAAGTCTGAATGTTGGCTCTCCGTTTACTGTGGGTGTCGCGGAGGAATGCGACACCTCGTCTGGTCGCGTAATGGCTGCCGCGCCAGATGACACTCACAAAATGGCGGCCACCACTACTACAATGCCAAGTCAAGTCCAAGTTAAACTTCCCGAGTCACGTCCCATCTCCGCTGATCTTCTAGATTTACATCACGTCTCTGGATCTGTTTGGGAGCGGAGTGGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU596843 False 509 TUCP 0.55 2 451033 451562
TU596844 False 506 TUCP 0.54 2 451033 451562
TU596845 True 345 lncRNA 0.50 2 451197 451562

Neighbor

gene id symbol gene type direction distance location
CI01000364_00391142_00398789 NA coding downstream 52267 390951 ~ 398930 (-)
CI01000364_00373309_00374559 NA coding downstream 76638 373309 ~ 374559 (-)
CI01000364_00110528_00118790 NA coding downstream 332407 110429 ~ 118790 (-)
CI01000364_00081223_00107594 NA coding downstream 343404 81180 ~ 107793 (-)
CI01000364_00037534_00041491 NA coding downstream 407478 36674 ~ 43719 (-)
CI01000364_00455879_00458332 NA coding upstream 4317 455879 ~ 458332 (-)
G520238 NA non-coding downstream 9546 441403 ~ 441651 (-)
G520221 NA non-coding downstream 26152 424723 ~ 425045 (-)
G520107 NA non-coding downstream 141267 232054 ~ 309930 (-)
G520108 NA non-coding downstream 180611 250124 ~ 270995 (-)
G520099 NA non-coding downstream 186433 263008 ~ 264764 (-)
G520259 NA non-coding upstream 11424 462986 ~ 463228 (-)
G520263 NA non-coding upstream 17158 468720 ~ 468944 (-)
G520283 NA non-coding upstream 43198 494760 ~ 495117 (-)
G520100 NA non-coding downstream 132461 20310 ~ 318572 (-)

Expression


Co-expression Network