Gene
RNA
| Item | Value |
|---|---|
| gene id | G520252 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000364 |
| NCBI id | null |
| chromosome length | 520240 |
| location | 456784 ~ 457061 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU596850 | True | 278 | lncRNA | 0.47 | 1 | 456784 | 457061 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000364_00400175_00427556 | NA | coding | upstream | 29208 | 399374 ~ 427576 (+) |
| CI01000364_00382475_00385399 | NA | coding | upstream | 70667 | 382475 ~ 386117 (+) |
| CI01000364_00294611_00295771 | NA | coding | upstream | 160834 | 294401 ~ 295950 (+) |
| CI01000364_00287825_00289294 | NA | coding | upstream | 165712 | 287047 ~ 291072 (+) |
| CI01000364_00263052_00264410 | NA | coding | upstream | 192037 | 262985 ~ 264747 (+) |
| CI01000364_00458726_00460323 | NA | coding | downstream | 1665 | 458726 ~ 461629 (+) |
| CI01000364_00471523_00472629 | NA | coding | downstream | 14462 | 471523 ~ 472821 (+) |
| CI01000364_00512592_00513897 | NA | coding | downstream | 54770 | 511831 ~ 514181 (+) |
| G520244 | NA | non-coding | upstream | 10007 | 446461 ~ 446777 (+) |
| G520222 | NA | non-coding | upstream | 31076 | 425438 ~ 425708 (+) |
| G520208 | NA | non-coding | upstream | 79815 | 376701 ~ 376969 (+) |
| G520207 | NA | non-coding | upstream | 80456 | 375697 ~ 376328 (+) |
| G520257 | NA | non-coding | downstream | 4958 | 462019 ~ 462225 (+) |
| G520258 | NA | non-coding | downstream | 5511 | 462572 ~ 463344 (+) |
| G520260 | NA | non-coding | downstream | 6684 | 463745 ~ 464082 (+) |
| G520013 | NA | other | upstream | 119677 | 309368 ~ 337107 (+) |
| G520009 | NA | other | upstream | 132553 | 241321 ~ 324231 (+) |
| G520012 | NA | other | upstream | 201778 | 250300 ~ 255006 (+) |
| CI01000364_00151094_00203772 | NA | other | upstream | 271741 | 150818 ~ 203857 (+) |
| G520007 | NA | other | upstream | 410938 | 44426 ~ 45846 (+) |
