XLOC_000014 (tmco3)


Basic Information

Item Value
gene id XLOC_000014
gene name tmco3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 218524 ~ 225137 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000030
ATGCGAGCTCTGTGTGCAGTGCTGTGCCTCGGCCTGGTGGTGGCGCTGCAGCAGAAGCCGCTCCACAGATCCGTCCATGGGCAGCAGTGGGTGTCGGAGAACTGCCGGCGGCTCTCCACGCTGCTGCGGCAGAAACAGTCAGCGGTGCGGAGGCTGGACACGGCAGCAGCGGCTCTGCAGCGAAACCAGGAGCTGGCACCGGCTGAGAAGCTGTTCCGCATCCACACGCTGGAGGTGTTCGAGCGCGAGCTGAACGAGAGCGAGAGATCCCTGTTCCAGGCCCTGGAGGGACTGCAGCGCGTGCTGAAGGGAAACCTCAGAGACGTGGTGAACATGAAGGAGAGCAGCAGACAGCGGCTGGAGGCACTCAGAGAAGCGGCCATCAAGgAGGAGCAGGAGTACATGGAGCTGGTGGCGGCAGAGAAACACCAGCAGGAGGCGCTGAAAGTGGCGCAAGATCGAAACAAAACCCTGTCAGTGCTGGACGAGATCCTGGAGGATGTGAGGAAGGCTGCGGACCGCCTGGAGGAGGACATCGAGGAGCACGCCTTCGACAACAACAAACAGATGAAGGGTGTGAATGTGGAGGCGGTGCTGCGAGtggaggaggatgaggaggacgGGAAGAGGAAGAACGCCTCCAGGCCGCAGGTCCAGGGTAACCTGGGACTCAGCATGCTGATCGACTCGCAGAATAACCAGTATGTGCTGACCAAACCCCGGGACGCCACCATCCCCCGCGCCGACCACCACTTCATCAAGgatgtAGTGTGTGTGGTGATGCTGTCTCTGCCGTGTGGTTGGCTCTGTACACTGATGGGTCTCCCGCCCATGTTCGGCTACATCATCTGCGGGGTTCTGCTCGGCCCTTCCGGACTCAACAGCATCAAATCGATGGTGCAGGTGGAGACGCTGGGAGAGCTGGGGGTGTTCTTCACACTCTTCGTGGTGGGTCTGGAGTTTTCCCCTGAGCGCCTCCACAAGgtgtggaGGATCTCCCTACAGGGCTCTGTTCTTCTCAGTCTGCTGATGGTGTGTGTGGGGCTGATCTGGGGTCAGCTGCTGGGTCTGCAGCCCACACAGACACTCTTCATCTGCAGCTGTCTGTCCCTGTCCAGCACCCCACTGGTGTCCCGCTTCCTGAGCGCAGCTCCCGAGAgtgAGCTGGACTACAGCAGTGTGTTGCTGGGGATGCTGGTGATGCAGGATGTCCAGCTCGGCCTCTTCATCGCTGTAATGCCCACATTGATCCATGGAGGTGATGGAGAAGTGGACAGtgttgtGCTGGCGGCGCTGCAGGTGCTGGTTCTGCTGGCTCGGGTTCTGGTGTCTCTGGCCGCTGTGGTTCTCCTCTGCTGGATCCTGCGCTCGCATCTGATTGGTCCGTTCTACAGGAAGCTGCACGCCGAGAGCAAAGGAAACAAGGAGATCGTGGTGCTGGGGACCAGTGCGTTTGTGTTCATGATGCTGAcgCTGACGGAGTTCATGGACGTGTCGATGGAGCTGGGTTGTTTTCTGGCCGGAGCGCTGCTGTCCTCTCAGGGTCACATGGTCACGGCAGAGGTCATGACCTGCGCTGAACCCATCCGAGACTTCCTGGCCATCATCTTCTTTGCTTCTATAGgGTTTCACGTGTTCCCGACCTTCGTCCTGTATGAGCTGACCATCCTGCTGGTGCTGACTTTCTCTCTGGTCATCATGAAGTTCATGATAGCGGTGGCGGTTCTGTCGGCTCTTCTTCCTCCGGGGTCGAGGCACATCCGCTGGCTGGTGTCGGCCGGTCTGGCGCAGGTCAGCGAGTTCTCCTTCGTGTTGGGCAGTCGAGCGCGGCGGGCCGGCATCATCTCCAGGGAGGTGTATCTGCTGGTGTTGAGCGTCACCACACTGAGTCTCCTGCTCGCTCCGGTGTTGTGGAGAGCTGCTACGATGCGATGCGTCCCACGCGGAGAGAGGAAGCGCACACCTGAGCACGAGAAACCTGCGCTCAATCTGTCCTGA
>TCONS_00002801
CTCAACAGCATCAAAGTGAGtgaagctacacacacacacacacacacactcacacactcactctgtGTTCCTCTGCAGTCGATGGTGCAGGTGGAGACGCTGGGAGAGCTGGGGGTGTTCTTCACACTCTTCGTGGTGGGTCTGGAGTTTTCCCCTGAGCGCCTCCACAAGgtgtggaGGATCTCCCTACAGGGCTCTGTTCTTCTCAGTCTGCTGATGGTGTGTGTGGGGCTGATCTGGGGTCAGCTGCTGGGTCTGCAGCCCACACAGACACTCTTCATCTGCAGCTGTCTGTCCCTGTCCAGCACCCCACTGGTGTCCCGCTTCCTGAGCGCAGCTCCCGAGAGCTAAAGAGGgtgAGCTGGACTACAGCAGTGTGTTGCTGGGGATGCTGGTGATGCAGGATGTCCAGCTCGGCCTCTTCATCGCTGTAATGCCCACATTGATCCATGGAGGTGATGGAGAAGTGGACAGtgttgtGCTGGCGGCGCTGCAGGTGCTGGTTCTGCTGGCTCGGGTTCTGGTGTCTCTGGCCGCTGTGGTTCTCCTCTGCTGGATCCTGCGCTCGCATCTGATTGGTCCGTTCTACAGGAAGCTGCACGCCGAGAGCAAAGGAAACAAGGAGATCGTGGTGCTGGGGACCAGTGCGTTTGTGTTCATGATGCTGAcgCTGACGGAGTTCATGGACGTGTCGATGGAGCTGGGTTGTTTTCTGGCCGGAGCGCTGCTGTCCTCTCAGGGTCACATGGTCACGGCAGAGGTCATGACCTGCGCTGAACCCATCCGAGACTTCCTGG

Function

symbol description
tmco3 Predicted to enable solute:proton antiporter activity. Predicted to act upstream of or within cation transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO3 (transmembrane and coiled-coil domains 3).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015299 solute molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071030-1 Predicted to enable solute:proton antiporter activity. Predicted to act upstream of or within cation transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO3 (transmembrane and coiled-coil domains 3).

Ensembl:

ensembl_id ENSDARG00000075108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000030 False 1998 mRNA 0.60 12 218524 225137
TCONS_00002801 True 797 lncRNA 0.58 5 221385 222804

Neighbor

gene id symbol gene type direction distance location
XLOC_000013 lamp1a coding upstream 36266 176583 ~ 182258 (+)
XLOC_000012 cul4a coding upstream 51126 157793 ~ 167398 (+)
XLOC_000011 NA coding upstream 61242 156792 ~ 157282 (+)
XLOC_000010 prozb coding upstream 66526 144284 ~ 151998 (+)
XLOC_000009 f10 coding upstream 76055 135903 ~ 142469 (+)
XLOC_000015 tfdp1b coding downstream 2104 227241 ~ 243798 (+)
XLOC_000016 grk1a coding downstream 19939 245076 ~ 258138 (+)
XLOC_000017 cenpe coding downstream 34902 260039 ~ 296057 (+)
XLOC_000018 NA coding downstream 130344 355481 ~ 358562 (+)
XLOC_000019 tpp2 coding downstream 193732 418869 ~ 443759 (+)
XLOC_000024 dre-mir-155 non-coding downstream 351307 576444 ~ 576521 (+)
XLOC_000026 NA non-coding downstream 569839 794976 ~ 911551 (+)
XLOC_000028 NA non-coding downstream 790675 1015812 ~ 1033638 (+)
XLOC_000029 CR450787.2 non-coding downstream 993554 1218691 ~ 1218805 (+)

Expression


Co-expression Network