XLOC_014046


Basic Information

Item Value
gene id XLOC_014046
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 23085107 ~ 23093109 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029903
GGTAAATGTGTGTGGGTTGATTTGCATGAGAAGCTACTtttaaagaattataaaaatacgGGCCAAAACCCATCCCGTACTGTCACACTGTGCAAAGAAGACGTGGAGACCCAAATGCAAGTGacagtttatttacaattcaGAGAGAACACAGAACCAAGAGAAGCTGGCTGGCTGGAAGTCAGGTGATCACAAGTGGCAGATGAAGGAACAAACAGAGCGAATCAAAAGTTCATCGGGTAGATCTtcaatctccgtcaacagagcgaatcaaaAGTTCAGCGGGGAGATCTtcaatctccgtcaacagagcAAATCAAAAGTTTATCGAGGAAAAACTTCAACCAGCGCACAACCAGCAAACTCAACGGGGAGAGCCTGACAAAGGGGGGGGGGAACTGGTGCATGCggattaattgccgtatgaaaaacgggctttactttagatacatgaaacacgggatgaattctcctgtacgctggaggtaatttgaggcggactgccacaggattaatgattttagtgacagtgaaagggccaataaatttaggagctaacTTATTACAAACGGTGCGGAGAGGAATGTTTTTAGATGacagccacactttttgaccgacaacgtaaacgggaggctttggggtcattgtatgtcgcgatctatttttttacagtctatggtctcaatcccaagattcattgcgatcccaatgtccactgcggttttccacttgatgcagaaactTTAGACACTGGATTAATGTCCTGGATTAAGTCCAATGTATTTATTGGAAAACAGTAGAAAAATCTGCAAATAAGTGGGTTGCAGACGTAATTACTTATTTGTCTTCCACACTTGTAGCAAAAGAATGCAGAGGCCATAAAAATTAATCTTGACTAAGGaactCACCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCAAAACCGCCCAACTCAGAATCAGTGTTGTGGTGCCATTTTGAAGCTGGAACCTCATCTTGTGTACATAAAAGGCAGAGTTGAAAATCCACTGGTTGTCTTGTATTGTGTGTGGCAAAACCGGGGATTACACATGGGAGCCTTCCAGGACTTCCCGACACTTTACGCCCAAGTCTCCTCATGCCAACCGGTttgcaatatgacagtctagtcactataaacacctggactcaccaagcacactttggttttcagtgttttgtaaaaaaatgtttttgaaaagtgtCATAGCTTTTAAGTGCTTTTGCTGTATGAGTATAGAAAGTTGTCATTATAAACATTTTTGCATTTGTCATGAACTTgacttgttgttgttgtgaaagtTTATTATAATGGCATTTATAAAGAcatcatttaaaaagatttttttgcagtgcagtttttCTTGAGTTTGACATACCAGAtgtatgacatgaataaat
>TCONS_00029717
TGTGTGTGGGTTGATTTGCATGAGAAGCTACTtttaaagaattataaaaatacgGGCCAAAACCCATCCCGTACTGTCACACTGTGCAAAGAAGACGTGGAGACCCAAATGCAAGTGacagtttatttacaattcaGAGAGAACACAGAACCAAGAGAAGCTGGCTGGCTGGAAGTCAGGTGATCACAAGTGGCAGATGAAGGAACAAACAGAGCGAATCAAAAGTTCATCGGGTAGATCTtcaatctccgtcaacagagcgaatcaaaAGTTCAGCGGGGAGATCTtcaatctccgtcaacagagcAAATCAAAAGTTTATCGAGGAAAAACTTCAACCAGCGCACAACCAGCAAACTCAACGGGGAGAGCCTGACAAAGGGGGGGGGGAACTGGTGCATGCggattaattgccgtatgaaaaacgggctttactttagatacatgaaacacgggatgaattctcctgtacgctggaggtaatttgaggcggactgccacaggattaatgattttagtgacagtgaaagggccaataaatttaggagctaacTTATTACAAACGGTGCGGAGAGGAATGTTTTTAGATGacagccacactttttgaccgacaacgtaaacgggaggctttggggtcattgtatgtcgcgatctatttttttacagtctatggtctcaatcccaagattcattgcgatcccaatgtccactgcggttttccacttgatgcagaaactTTAGACACTGGATTAATGTCCTGGATTAAGTCCAATGTATTTATTGGAAAACAGTAG
>TCONS_00029719
tgtttttattcatttcagatgcagaaactTTAGACACTGGATTAATGTCCTGGATTAAGTCCAATGTATTTATTGGAAAACAGTAGAAAAATCTGCAAATAAGTGGGTTGCAGACGTAATTACTTATTTGTCTTCCACACTTGTAGCAAAAGAATGCAGAGGCCATAAAAATTAATCTTGACTAAGGaactCACCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCAAAACCGCCCAACTCAGAATCAGTGTTGTGGTGCCATTTTGAAGCTGGAACCTCATCTTGTGTACATAAAAGGCAGAGTTGAAAATCCACTGGTTGTCTTGTATTGTGTGTGGCAAAACCGGGGATTACACATGGGAGCCTTCCAGGACTTCCCGACACTTTACGCCCAAGTCTCCTCATGCCAACCGGTttgcaatatgacagtctagtcactataaacacctggactcaccaagcacactttggttttcagtgttttgtaaaaaaatgtttttgaaaagtgtCATAGCTTTTAAGTGCTTTTGCTGTATGAGTATAGAAAGTTGTCATTATAAACATTTTTGCATTTGTCATGAACTTgacttgttgttgttgtgaaagtTTATTATAATGGCATTTATAAAGAcatcatttaaaaagatttttttgcagtgcagtttttCTTGAGTTTGACATACCAGAtgtatgacatgaataaatatcacaaaataaacataataataataataataataataataataataataataataataataataacaattatacaaaatatacatttcct
>TCONS_00029718
tgtttttattcatttcagatgcagaaactTTAGACACTGGATTAATGTCCTGGATTAAGTCCAATGTATTTATTGGAAAACAGTAGAAAAATCTGCAAATAAGTGGGTTGCAGACGTAATTACTTATTTGTCTTCCACACTTGTAGCAAAAGAATGCAGAGGCCATAAAAATTAATCTTGACTAAGGGTAAGatttttgttcagaattaatcattatttaaaatcattgtattttccTTGTTAATATGTACAGATTCGAAAAGAATGtactttcttttaataaagaactCACCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCAAAACCGCCCAACTCAGAATCAGTGTTGTGGTGCCATTTTGAAGCTGGAACCTCATCTTGTGTACATAAAAGGCAGAGTTGAAAATCCACTGGTTGTCTTGTATTGTGTGTGGCAAAACCGGGGATTACACATGGGAGCCTTCCAGGACTTCCCGACACTTTACGCCCAAGTCTCCTCATGCCAACCGGTttgcaatatgacagtctagtcactataaacacctggactcaccaagcacactttggttttcagtgttttgtaaaaaaatgtttttgaaaagtgtCATAGCTTTTAAGTGCTTTTGCTGTATGAGTATAGAAAGTTGTCATTATAAACATTTTTGCATTTGTCATGAACTTgacttgttgttgttgtgaaagtTTATTATAATGGCATTTATAAAGAcatcatttaaaaagatttttttgcagtgcagtttttCTTGAGTTTGACATACCAGAtgtatgacatgaataaatatcacaaaataaacataataataataataataataataataataataataataataataataataacaattatacaaaatatacatttcct
>TCONS_00029904
TAATGTCCTGGATTAAGTCCAATGTATTTATTGGAAAACAGTAGAAAAATCTGCAAATAAGTGGGTTGCAGACGTAATTACTTATTTGTCTTCCACACTTGTAGCAAAAGAATGCAGAGGCCATAAAAATTAATCTTGACTAAGGGTAAGatttttgttcagaattaatcattatttaaaatcattgtattttccTTGTTAATATGTACAGATTCGAAAAGAATGtactttcttttaataaagaactCACCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCAAAACCGCCCAACTCAGAATCAGTGTTGTGGTGCCATTTTGAAGCTGGAACCTCATCTTGTGTACATAAAAGGCAGAGTTGAAAATCCACTGGTTGTCTTGTATTGTGTGGTAAGTCATAGCTTTATTCATTGTTCTATTTCATTACAACACCAAGTAGTCCATTATGTGGCCAATATAATATATAGGGCCAAAAATGGGACTGATGTGatcattgttttgatttctagGTAAGTACTCAAGGGCCTACACACGTAGCTAAAATTAGCTACATTGAGTAGGACATTTCTTTCAGTttactcttaaagagatagttcacccaaaaaaagaaaattctgtcattaatgactcatgcttcacttgttccaaatatgtctgagttgctttcttcagttaaacacaaaaaatatatatattttaaagaaagatgaaaacctgtaaacactgacttccatagtgtttgttttttcctacaaTGTATGTCAATATTttcaggttttcagttttctttaaaaaacttcCTTCataattaacacaaataaattgcatgttttataaaaaaatatttacaaccactcaagggaaagtaagttgtgaactattcctttaacccaATCAGGTTGACTTTACTAGAAAATTGTATAGAAACCCAGTGCCTTAAACTCTTTACATTATATACAAGATAAAACTTAACAGCCctacttgaattaaaatattactgtaagtcCAAGCATTACACTTGTCATAATTTAGCAATATTATAAGGGTGGAGCACTGTATGCTGTTGTAGTTTTCATATAATTTAGTCAAAGAGTCAAAGAGTGTGTTTTAAATAGCAAGAAGTGATCAACACAGTCACTATCCTCATACCTGAGTCTGTAGAACTAACAGACCTGCTTGGAATACATGAAAACATGCTGAAAATGTTGAACTTATTCAAGGAGTAATTCAAGAGAGCCAGGTTTAATGACACTTTACAGTTATACATAAATATCATTGAACTTTCTAAATGAAACCTAACAATCATCTTGATTCTTTGTTCTTTAATGATATTGTGCACTTCTGATACTTTACAGTGGCAAAACCGGGGATTACACATGGGAGCCTTCCAGGACTTCCCGACACTTTACGCCCAAGTCTCCTCATGCCAACCGGTttgcaatatgacagtctagtcactataaacacctggactcaccaagcacactttggttttcagtgttttgtaaaaaaatgtttttgaaaagtgtCATAGCTTTTAAGTGCTTTTGCTGTATGAGTATAGAAAGTTGTCATTATAAACATTTTTGCATTTGTCATGAACTTgacttgttgttgttgtgaaagtTTATTATAATGGCATTTATAAAGAcatcatttaaaaagatttttttgcagtgcagtttttCTTGAGTTTGACATACCAGAtgtatgacatgaataaat

Function

GO:

id name namespace
GO:0044092 negative regulation of molecular function biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:2000257 regulation of protein activation cascade biological_process
GO:0043086 negative regulation of catalytic activity biological_process
GO:0010466 negative regulation of peptidase activity biological_process
GO:0045861 negative regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0052548 regulation of endopeptidase activity biological_process
GO:0051346 negative regulation of hydrolase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029903 False 1429 lncRNA 0.41 4 23085107 23093018
TCONS_00029717 False 794 lncRNA 0.44 2 23085113 23091326
TCONS_00029719 False 806 lncRNA 0.34 3 23091241 23093109
TCONS_00029718 False 904 lncRNA 0.33 2 23091241 23093109
TCONS_00029904 True 1736 lncRNA 0.33 1 23091283 23093018

Neighbor

gene id symbol gene type direction distance location
XLOC_014045 BX571825.4 coding upstream 3207 23080227 ~ 23081900 (+)
XLOC_014044 BX571825.14 coding upstream 34947 23049885 ~ 23050160 (+)
XLOC_014043 BX571825.16 coding upstream 36593 23048480 ~ 23048514 (+)
XLOC_014042 BX571825.7 coding upstream 39864 23043685 ~ 23045243 (+)
XLOC_014041 gdf6b coding upstream 82224 22999181 ~ 23002883 (+)
XLOC_014047 BX571825.15 coding downstream 21948 23115057 ~ 23115094 (+)
XLOC_014048 BX571825.13 coding downstream 26604 23119713 ~ 23119939 (+)
XLOC_014049 BX571825.5 coding downstream 27900 23121009 ~ 23124591 (+)
XLOC_014050 irgf1 coding downstream 203507 23296616 ~ 23312618 (+)
XLOC_014051 si:dkey-79i2.4 coding downstream 207011 23300120 ~ 23306298 (+)
XLOC_014038 BX511206.1 non-coding upstream 315880 22769111 ~ 22769227 (+)
XLOC_014052 BX927216.1 non-coding downstream 544680 23637789 ~ 23641331 (+)
XLOC_014053 BX927234.1 non-coding downstream 559290 23652399 ~ 23654714 (+)

Expression


Co-expression Network