XLOC_014050 (irgf1)


Basic Information

Item Value
gene id XLOC_014050
gene name irgf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 23296616 ~ 23312618 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028026
ttTGGGCGGATCTTGCTCTGCTCTtccgttttttgtttttgttttctgtctTCTGTCCAGTCAAAAATTTCAGTTTGTGCAATAATCTTTCTATATTCAGATTCGTTTTGAGTGGGTTGCACTGAAGATTTTGATGGCTACATTTGAAGACTATTGTGTAATAACCCAGGAGGACCTGGATGATATTAAAGATTCAATATCTACACAGGATCTCCCATCAGCTGTAAACACTATAAAAGAGTATCTCAAACAGCAAGATCTCGTTGAACTTAACATTGGTGTGACTGGAGAGTCTGGTTCTGGAAAGTCCACATTTGTCAATGCATTCAGGGGTTTAGGAGATGAAGATGAGGGCTCTGCTGAAACTGGCCCTGTAGAAACCACTATGGAGCCTGAAGTTTATATTCACCCGAAATACCACAATGTGAAAGTGTGGGACCTTCCTGGCATTGGAACACCAAATTTTAAAGCCGATGAGTATCTCGAGTTGGTTGAGTTTGAGCGCTATGATTTTTTCATTATCATCGCTTCAGATAGATTTAGAGAATGCCACACTCAGCTGGCCAAAGAGATCATGAGGATGGGGAAGAAGTTTTACTTTGTTCGCTCCAAGATTGATGCAAGCATTACAgctgagaagaagaagaagaactttGACCAGAAAAAGACACTGGATTCCATCCGCAAGGACTGTATAAATgGTCTGAGAAAGATCGGTATAGAAGATCCCATTGTATTCCTGATCTCAGGCTGGGAGCTCAGCAAGTATGATTTAAATCTGCTGCAGGATAGAATGGAGAAAGAGCTTCCACAGCATAAGAGACGTGTACTGATGTTGGCTTTGCCAAATATCACACTGGAGATTaatgagaagaagaagaaagctCTTGAGGAAAACATCAGAAAAGTTGCCTTTCTGTCTGCTTGTGTTGCTCTTTTCCCCCTTCCTGGTCTTTCCATCAGTGCAGATATAGCCATCATAGCAGAAGAGCTGAGAAAGTACTACAGTGCATTTGGTCTGGATGATCCATCCCTGCAGAAACTCTGTGAACGATCAGGGAAAACCGTAGAGGAACTGAAGAGTCTGATGAAGTCTCCTCTGCATCACGGGATCAACCCAAGTTCAATATTAACCTTGCTGGGCGCTGCCTCTGTTCTTATATCAGAAGATGCTGTTGAGTTACTTGTGAGCTTCATACCCATTATTGGCTCTGTGGTGGCAGGAGGACTTTCTTATTTGACCGTCTCAGGAATGCTGAAGAAAGCTCTGAATGAAATAGCAGAAGATGCTAGGAATGTTTTAATGGCTTCACTAGAGACTGAAGTATAA
>TCONS_00028027
ATGGCTACATTTGAAGACTATTGTGTAATAACCCAGGAGGACCTGGATGATATTAAAGATTCAATATCTACACAGGATCTCCCATCAGCTGTAAACACTATAAAAGAGTATCTCAAACAGCAAGATCTCGTTGAACTTAACATTGGTGTGACTGGAGAGTCTGGTTCTGGAAAGTCCACATTTGTCAATGCATTCAGGGGTTTAGGAGATGAAGATGAGGGCTCTGCTGAAACTGGCCCTGTAGAAACCACTATGGAGCCTGAAGTTTATATTCACCCGAAATACCACAATGTGAAAGTGTGGGACCTTCCTGGCATTGGAACACCAAATTTTAAAGCCGATGAGTATCTCGAGTTGGTTGAGTTTGAGCGCTATGATTTTTTCATTATCATCGCTTCAGATAGATTTAGAGAATGCCACACTCAGCTGGCCAAAGAGATCATGAGGATGGGGAAGAAGTTTTACTTTGTTCGCTCCAAGATTGATGCAAGCATTACAgctgagaagaagaagaagaactttGACCAGAAAAAGACACTGGATTCCATCCGCAAGGACTGTATAAATgGTCTGAGAAAGATTGGGATAGAATATCCTGTTGTGTTCCTGATTTCTGGATGGGACCTTGGAAAGTATGATTTAAATCTGCTGCAGGAGATGATGGAGAAAGAGATTCTCAAGTGTAAGAGAATTCTGCTCAAGTCAGCTTTGCTAAATGTCAAACAGGAGGTTATTGAGCAAAGGAAGGATACTCTTAAGAGAAACATTGAAAGAGTAACAGAGCAGTCTGTCGCTATCACTGATGTTCACCTCCCGGGTCTTTCAATTTCTGTGAATGTAGACATCATAGCAGAAGAGTTGACAAAGTACTACAGTGAGTTTGGTCTGGATGATCAGAGTCTACAGAAACTCTGTGAACGATCTGGGAAAACCATAGAGGAACTGAAGAGTCTGATGAAGTCTCCCCTGTGTTATGGAATAAACACATCTTTAATAATAAACTTGCTGGAGGCTGAAGTTCCTAAAATTGAAAATGAGTATTTTTTGAGCTTCATGCCATTTATTggcactgaaataaaaaaaataaagtccaGTGTGGCAGTCTCATCAATGCTGAAGACAGCTCTGAATGTCATAGCAGAAGACATCAGAAATGTGATAATAGCATTACTGGAGACTGAAGTGTAAATGTTTAAGAtggagcccagacctaaattcttttgaacatctatggagagatctgaaaatggcatGCTGGTAAATCCCAATGAGGCATGGCactgccaatttttttttttttttttttttttttttactactgggAAAGCAACATTTAAAGAATTGTGTACTGGGTTTCTTTTTGAGACCCAGTATCAATTCCGCTGTGGGTACAGGGTAAAATAGCTTGTTCCAGAGTTTCTCCTAAATCTTTGATATGTGCATCACTTCCAATTTCACAAAGgttacatgactttttttaatccaATAGTTGTACATACACTAAAAATGTGGCCACAGTTtagaaagcattttggctttcaGGCTCTCTCTATTGCAGGTCCTATTGCCCCTAACTGTTTATTTGCCCCATCATGTATGGACTCATTTCAGGTGTGGGAGGAGAAGGGGATTAAATGCCTGaaagatttattcattaataatattttCTGCTTCTTTGAAGAGCGTGCCCATATTTTTTCTCTGTCCAAAATCAATTTTTTCAGATTTCTGCAAATATGAAGCTTTGTTGAGTCAAAATTTACATCCTTTCCTGAATTTCCTGCTGCCTCAGTAATTGATGTAGATTTGTAGACTAATTTCTCTTATATACTCTTTAATTTGTACAATAGATCTTCAAAGTCTTGAACATTAAAACCTCTTGGCAGCTTGACTTGAGCAGAGACTTCACCGATTCAGAATGGAAtggtattttaaataaagtacacTCATAATCACACTGTACTAGACATGCCcttattcaatttaaaatacTTCACAGGTTACATTTTACCAATTTAAAGTTGTCTAGGATCTATCCTACTATTAGTCCAGCTTGCAGTAGATGGTCAAATTCACATGCCACAGCTGGCCACATGTTTTGATTCTGCCCAAATCTAGGGAGGTtttggaaaaatatttttcaatcaTTTAGTTGTATGTATGGTTTTCCTATAGAACCTGAACCCCTGTTGGCATTTTTTGGAACCAGTCCTGAAAATATTGTGCTTATAGAAGAAGTATGTAGAGTAATAGCTTTTACCATGCTATTGGCAAGGAGTTTTATTCTTctgtattggaaaaaaaaaaaactgatgcccTAACACATAGTAGATGGATTAAAGACGTGATATATTTTATTCAGattgaaaaaatctaatttataaaaaaaaaatatatatatatatatatatatatatttttttttttttttaaaacatggatTCTCTTTCTTACATACTTTGACAATTTTGTACAATACAATTTTTAGAGCAGGAGGATATTTAATCCCATATAATGACCgcctcattattttttaaaatcatttctcTTTCATCTCACTGTAACCTGCTATGTTTATCTTCTGTTAAAGCCACAAAAGGGAAAGTTGTGTTGGGgatgttttttgtatattttgttttgttgttgttgactgttttttctgttttgtgcaaatgtataaaaaatccttataaataaattattaaaaaaaactacaccTATGTAAACAGTGGTTGAATGAGATAAAACTTCTTTGCAAATCTGTAAAATAAGTGAATGATAAAAGGCCCTTAAGCTTATCTATTTTCtgcatttttatcatttaatttttaaagcctcttttttatttttatttcatttattttattgcaatttataaaacaaaaaaaaaaacagtttttttttgttcttaagaTGCACATTATGTTTGCCTATTTTATTACTCAACCTTGAGATGACATATTGTAAGTATGTACTATTTTGTTTGTATGTTCAacttaaaacagattttttaaaaagtcctcggtttgagtcattcattcatgaCATGAAAGACAGAAACCAATCATATGTATTTTGTgccagaaaaagatttgatctgtttatttcgagtcctcggtttgagtcattcgttcatcacgtgaaagacagaagccaatcctatgcatttagagccggtaGAGGATTTGATTCGTTCATCTCCTAAATCCTTAG
>TCONS_00028030
AGATCAAAGAAATCTTATACACCCAAGATCTGCCAACAGCATTTGGCACAATCAGCAATTATTTTAAGGAGACTTCTCTTGTACTTAACATTGGTGTGACAGGAGAATCTGGTTCTGGAAAGTCCACATTTGTCAATGCATTCAGGGGTTTAGGAGATGAAGACGAGGGCTCTGCTAAAACCAGTTCAGTGGTGACCACTGCAGAGCCGGAAGTTTATTTTCatccaaaatatgaaaatgtgaAATTGTGGGATCTTCCTGGCATTGGAACACCAAATTTCAAAGCCGATAAGTATCTCGAGTTGGTTGAGTTTGAGCGCTATGATTTTTTCATCATCATCGCTTCAGATCGATTCAGAGAATGCCACACTCAGCTGGCCAAAGGGATCATGAGGATGGGGAAGAAGTTTTACTTTGTTCGCTCCAAAATTGATGCAAGCATTACAgctgagaagaagaagaagaactttGACCAGAAAAAGACACTGGATTCCATCCGAGAAGACTGCGAAAATGGTCTGAGAAAGATTGGGATAGAATATCCTGTTGTGTTCCTGATTTCTGGATGGGACCTTGGAAAGTATGATTTAAATCTGCTGCAGGAGATGATGGAGAAAGAGATTCTCAAGTGTAAGAGAATTCTGCTCAAGTCAGCTTTGCTAAATGTCAAACAGGAGGTTATTGAGCAAAGGAAGGATACTCTTAAGAGAAACATTGAAAGAGTAACAGAGCAGTCTGTCGCTATCACTGATGTTCACCTCCCGGGTCTTTCAATTTCTGTGAATGTAGACATCATAGCAGAAGAGTTGACAAAGTACTACAGTGAGTTTGGTCTGGATGATCAGAGTCTACAGAAACTCTGTGAACGATCTGGGAAAACCATAGAGGAACTGAAGAGTCTGATGAAGTCTCCCCTGTGTTATGGAATAAACACATCTTTAATAATAAACTTGCTGGAGGCTGAAGTTCCTAAAATTGAAAATGAGTATTTTTTGAGCTTCATGCCATTTATTggcactgaaataaaaaaaataaagtccaGTGTGGCAGTCTCATCAATGCTGAAGACAGCTCTGAATGTCATAGCAGAAGACATCAGAAATGTGATAATAGCATTACTGGAGACTGAAGTGTAA

Function

symbol description
irgf1 Predicted to enable GTP binding activity and GTPase activity. Predicted to be located in membrane. Orthologous to human IRGC (immunity related GTPase cinema).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051212-5 Predicted to enable GTP binding activity and GTPase activity. Predicted to be located in membrane. Orthologous to human IRGC (immunity related GTPase cinema).

Ensembl:

ensembl_id ENSDARG00000070774 ENSDARG00000092249

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028026 False 1330 mRNA 0.42 3 23296616 23299413
TCONS_00028027 False 3213 mRNA 0.35 2 23298037 23312618
TCONS_00028030 True 1136 mRNA 0.40 2 23308419 23310593

Neighbor

gene id symbol gene type direction distance location
XLOC_014049 BX571825.5 coding upstream 172025 23121009 ~ 23124591 (+)
XLOC_014048 BX571825.13 coding upstream 176677 23119713 ~ 23119939 (+)
XLOC_014047 BX571825.15 coding upstream 181522 23115057 ~ 23115094 (+)
XLOC_014046 NA coding upstream 203507 23085107 ~ 23093109 (+)
XLOC_014045 BX571825.4 coding upstream 214716 23080227 ~ 23081900 (+)
XLOC_014052 BX927216.1 coding downstream 325171 23637789 ~ 23641331 (+)
XLOC_014053 BX927234.1 coding downstream 339781 23652399 ~ 23654714 (+)
XLOC_014054 NA coding downstream 599610 23912228 ~ 23917095 (+)
XLOC_014055 CR677591.1 coding downstream 600564 23913182 ~ 23913300 (+)
XLOC_014056 snapin coding downstream 606478 23919096 ~ 23922495 (+)
XLOC_014061 BX548249.1 non-coding downstream 765317 24077935 ~ 24223669 (+)

Expression


Co-expression Network