XLOC_014053 (BX927234.1)


Basic Information

Item Value
gene id XLOC_014053
gene name BX927234.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 23652399 ~ 23654714 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028032
gcacaacactgagatagtcaagtcaccatgaaaaggtaaacgtttaacgttaagCTACATCAATgcatgttgaaaaactgatgctaccaatctctcctcacttgattattcaagctcagattgtgatggacctggaatgtgacaccagttactcttaagtcaagaaccgaataaagcacagatgtggagggatctgcaactaaactaactggaggaaaggaacctttagtgtgggtgaacatactaccttgatgtccaacaaaggctgcacaagagctcatttgatattacatattctgtcctgtctacatctttgatgaagtgcttcgacatcag
>TCONS_00028033
accatagatttagattattaaatgttaagtctcattttactcttattatatttatcttttttgcagCTACATCAATgcatgttgaaaaactgatgctaccaatctctcctcacttgattattcaagctcagattgtgatggacctggaatgtgacaccagttactcttaagtcaagaaccgaataaagcacagatgtggagggatctgcaactaaactaactggaggaaaggaacctttagtgtgggtgaacatactaccttgatgtccaacaaaggctgcacaagagctcatttgatattacatattctgtcctgtctacatctttgatgaagtgcttcgacatcag
>TCONS_00028034
gtttaacagaaattcaaactagtgtaaaacacatggagtaatggtggcagaattgtaaactatccttttaaatattttattctgagacttatttatatgtgtcttgtcttttgccatattgtctttctagctcagattgtgatggacctggaatgtgacaccagttactcttaagtcaagaaccgaataaagcacagatgtggagggatctgcaactaaactaactggaggaaaggaacctttagtgtgggtgaacatactaccttgatgtccaacaaaggctgcacaagagctcatttgatattacatattctgtcctgtctacatctttgatgaagtgcttcgacatcag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092089

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028032 False 336 processed_transcript 0.41 4 23652399 23654714
TCONS_00028033 False 348 processed_transcript 0.37 3 23652781 23654714
TCONS_00028034 True 352 processed_transcript 0.38 2 23653700 23654714

Neighbor

gene id symbol gene type direction distance location
XLOC_014052 BX927216.1 coding upstream 11068 23637789 ~ 23641331 (+)
XLOC_014050 irgf1 coding upstream 339781 23296616 ~ 23312618 (+)
XLOC_014051 si:dkey-79i2.4 coding upstream 346101 23300120 ~ 23306298 (+)
XLOC_014049 BX571825.5 coding upstream 527808 23121009 ~ 23124591 (+)
XLOC_014048 BX571825.13 coding upstream 532460 23119713 ~ 23119939 (+)
XLOC_014054 NA coding downstream 257514 23912228 ~ 23917095 (+)
XLOC_014055 CR677591.1 coding downstream 258468 23913182 ~ 23913300 (+)
XLOC_014056 snapin coding downstream 264382 23919096 ~ 23922495 (+)
XLOC_014057 si:dkey-222b8.1 coding downstream 277545 23932259 ~ 23970686 (+)
XLOC_014058 syt11a coding downstream 327752 23982466 ~ 24034710 (+)
XLOC_014047 BX571825.15 non-coding upstream 537305 23115057 ~ 23115094 (+)
XLOC_014046 NA non-coding upstream 559290 23085107 ~ 23093109 (+)
XLOC_014061 BX548249.1 non-coding downstream 423221 24077935 ~ 24223669 (+)
XLOC_014063 NA non-coding downstream 689291 24344005 ~ 24344658 (+)
XLOC_014065 NA non-coding downstream 793307 24448021 ~ 24449198 (+)

Expression


Co-expression Network