XLOC_014063


Basic Information

Item Value
gene id XLOC_014063
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24344005 ~ 24344658 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029720
cagcctatctacccagatgagagctgtgctaggcgaactgctcatcaagcatctcctgctggatctaatctcactatatttattaaacgtgatatttcatttatcttgttgtctatatctaacgataTATTCCtcgactttggtcattggaatctattacttgttctcaggtaacgtgttttggctatgcgcaaagataagttaatgattaatgtaaccacgtagccaacattctgtatattgactgatcgcttgcctttatttcctgtaatgtataaacttattgtatgttatacttttaaaaaggccattatcgattattaaaactgatattcagcataAGAGAGGGTATGtatcgtattttcactgaaattgaaaagaggcagttgttataggctccgttttgttataaatatccacacaatgaagatgatgctcattatgcagcacaacgcctcaacatttctgctgtctgttaagttgctaatattaaaaagaaaataggcagttccttaaatcatgttttcattttattgttgagaaagtaaaacaatgtagccaggatgatgtgaataaagttataaagtacactgttccctttgaagaatTTCCTGTGTCCTCGgtagtttgttttccatatcaaactgtaGAGGG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029720 True 654 lncRNA 0.35 1 24344005 24344658

Neighbor

gene id symbol gene type direction distance location
XLOC_014061 BX548249.1 coding upstream 120336 24077935 ~ 24223669 (+)
XLOC_014060 pex11b coding upstream 268908 24068223 ~ 24075097 (+)
XLOC_014059 rit1 coding upstream 278483 24039830 ~ 24065522 (+)
XLOC_014058 syt11a coding upstream 309295 23982466 ~ 24034710 (+)
XLOC_014057 si:dkey-222b8.1 coding upstream 373319 23932259 ~ 23970686 (+)
XLOC_014064 si:dkey-81h8.1 coding downstream 49902 24394560 ~ 24399838 (+)
XLOC_014065 NA coding downstream 103363 24448021 ~ 24449198 (+)
XLOC_014066 txnipa coding downstream 143745 24488403 ~ 24492326 (+)
XLOC_014067 BX530091.1 coding downstream 224707 24569365 ~ 24573197 (+)
XLOC_014068 si:dkeyp-92c9.4 coding downstream 230419 24575077 ~ 24589243 (+)
XLOC_014054 NA non-coding upstream 426910 23912228 ~ 23917095 (+)
XLOC_014055 CR677591.1 non-coding upstream 430705 23913182 ~ 23913300 (+)
XLOC_014053 BX927234.1 non-coding upstream 689291 23652399 ~ 23654714 (+)
XLOC_014052 BX927216.1 non-coding upstream 702674 23637789 ~ 23641331 (+)
XLOC_014070 NA non-coding downstream 255370 24600028 ~ 24604330 (+)
XLOC_014071 NA non-coding downstream 412194 24756852 ~ 24758083 (+)
XLOC_014072 NA non-coding downstream 413513 24758171 ~ 24760474 (+)

Expression


Co-expression Network