XLOC_014066 (txnipa)


Basic Information

Item Value
gene id XLOC_014066
gene name txnipa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24488403 ~ 24492326 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028049
CTCACTGGTAGAAGCGTCTGAGTATAAAACCCTAGCCTAGCCCAGCGTGCACAAAGCTCCTATACAAACCATGCGAGCCTGGAGTGTGTGATTAGTGCATTTGCATAAAGCACTTATTTACTGCTATTCACACATTTAATTCGTTTTGGATTGAGCTCGGATGCACTTCTGAAGGACTATTCAATATTTTAGCGATTTGCCAACTTTTTGTTGCTGAGATCGAGACGTGTGTTTTCTTTTTGGTTTGGAAATTTGTAACATCACAATGGTGGCGATGACAAAAAGAGTGAAGGTCTTCGAGATCGCCTTCAATGATCCATCCAAGACATTTTACTGCAGTGGAGATAAAGTGGCTGGAAAGGTTTTGGTGGAGGTGTCGGAGGTGACCAGAGTGATGGCCATGAAGGTCCTGGGAGTCGGTTGCGCTAAGGTGGAGTACGCGAAAGGCAAGCAGAGATGCCGTGAAGAAGTGGACTATCTGAAGTATGAAGATGTTGTCCAACTAGACGAACATCCAACAGACAATGATGGTTCTGTCATTCTCCGCCCTGGCAACAAGTATGAATATTCATTTGGCTTTGAGCTGCCAGCCCAAGGGCAGCTGGTGTCTTCTTACAAGGGCAAGTTTGGATTTGTTCAGTACTACGTGAAGGCTCTGATGGAAAGACCCTGTCAGCCCGCCCTGGAGTGCAAGAAACACTTTGAGGTTGAAGAGCCACTGGATGTCAACACTCCAGACTTGCTGTCCCCAACTGGTGGCATGAAGGAGAAGAAGGTGACCTGCATGTTCATCCCTGACGGCCAGGTTTCTCTCAACGCTAAGATTGACAGGCGTGGCTTCTGTGAAGGTGAAGAGATCTGCATTGATGCCAAATTTGAGAACACCTGCTCTCGCATCGTGGTACCCAAAGCAGCCATTGTGGCCAAGCAGACCTACCAAGCCAATGGCCGCACCAAGGTCTTCAGGCAAAAACTCTCCTCAGTGCGTGGCAACCACATCATCTCCGGCATGTGCGATGCCTGGCAGGGAAAGAGCATCCGTGTGCCTAAAATCAAGCCTTCCATTTTGGGTTGCAACATCATTCGAGTGGAATATGCACTTATGATTTACATGCACATCCCAGGCAGCGAAAAGTTGATTCTGGAGCTGCCCCTGGTCATTGGAACAGTGCCCTACAATGGTTTTGGTAGCCGCACCAACAGCATGAGCAGTCAGGATGGTTCCATCAGCAATGCATCGAATAGCTGGGTGTCCCTGCGAATGCCATCATCCGCCCCACCAAGCTACTGTGACATTACACGCGATTGCTGCATAGACCAACCTCTTACTCCTCTGCTGGATGACTATGATGGTGGAGACAGTCCCATCTTCATGAATGCAGCCCAGTTCCAGTTCCCTCCACTCCCTGCTTATTCTGAGGTGGAGGAGGAGTTCAATGCAAACGCCCGCATGCTTCCTGTCTGCTGAACCAACCTTAGCAGAGCACTAGAACTGAACTGTTGCCCGTAAAAAAGGGTATATTTTCCCACTCAAAAGCTCTTCGGGCTTTCACCATGCGGATCAAAGTCTGTTTGAGAAGTGTCGTATGGATGTGTGAAAGTAAAGATGAAGCGGAGGATTTCGGGGCCCCGAGTGGACCTTCTGCAGGACGAGCTAGTCGAAGTTCAGAGGAAGAAGACGTGTAGTCTGAGCTCTCTTGTGCCTGCATTGCTGACAGCCATCTTATATCATGCATCACTCaagttaaatgtgtttttgtcatATTACCGATGCTGTTTCAGGGCCTGAAAGAGGGCACAAGGGCTGTTTGGTGTGCTGTATTTCATTATATTTGAGCTGCTCTTTCTTACTATGAGATTACTGCTGAGGTGCAAACTGATTGTGTCGCAAAATAGCCATTTAAGCACACGTAGACTTTCCCAAATGGTGGTCATGTACTTTCCAATAGTCCCCCAATATGACATCCATTAGCATTTAGTGCATCGTTTTCGTTATCATTCCATAATTGTTTTGTGGGGATGGAAGATTTCATTTGTAGAAACATTCttcaacttgtttgttttttggtcatGAGGTTAGGTTGGTGTTCTAAccagagagatatatatatattgaatgtaAAGAAGATTTGTGGTATACCATACTCTTTTCATCAAGGGAAAAATCATACAGTGTCAGTTTGTCTTTGAACAGTGttgaggctgttttttttttttttctttttatttgaatgCACTTTTTATGGATGCAAGTTGCTGTGTAACTACTCCCAGGGAGATTTcctatgtttttctttttgtctttcttttgtcTTCCAAAATTGTTTAGGGATCAGGCATTGCAATCCCAACTCAAGACTGTactgtaatgcactcaaaacctTGTCCTAAGAAAGGGCTCCAGTGATGCTGTTTTTTCACTGTGGACTTGAGCATTAGGCCAAAAAAAGAGAACTCAACACTCCAAGTGCCAAAATTGGGGTCTGTTTGGACTTGAGCCCTGACCACGTTGATTTGTGAGACCAGAAGCTGCACTGTGTGCAGTTAATCCTGAAGACATTTTGATCAACATTTCACTTGTGGAGATCTTCCTGAAATttgttgattgtgtgtgtgtgttgttttgtttcttcACAGAGTgaaatattactgttattataaacagtgcaaaatgtgcaaatatcccttttttgtatgtaatttaaagagtttttgtatgagaattcatttttaataaaagttttaagatGTCA
>TCONS_00029909
GTTTTTGATTCCCTATTCTCTTTGGAGGGGTTTCCTTTTTTCTTATTTCATTACGGACCATATCACGTTAGAATTTAAACTACAAAAGCAGTTGGTGTTCTAAccagagagatatatatatattgaatgtaAAGAAGATTTGTGGTATACCATACTCTTTTCATCAAGGGAAAAATCATACAGTGTCAGTTTGTCTTTGAACAGTGttgaggctgttttttttttttttctttttatttgaatgCACTTTTTATGGATGCAAGTTGCTGTGTAACTACTCCCAGGGAGATTTcctatgtttttctttttgtctttcttttgtcTTCCAAAATTGTTTAGGGATCAGGCATTGCAATCCCAACTCAAGACTGTactgtaatgcactcaaaacctTGTCCTAAGAAAGGGCTCCAGTGATGCTGTTTTTTCACTGTGGACTTGAGCATTAGGCCAAAAAAAGAGAACTCAACACTCCAAGTGCCAAAATTGGGGTCTGTTTGGACTTGAGCCCTGACCACGTTGATTTGTGAGACCAGAAGCTGCACTGTGTGCAGTTAATCCTGAAGACATTTTGATCAACATTTCACTTGTGGAGATCTTCCTGAAATttgttgattgtgtgtgtgtgttgttttgtttcttcACAGAGTgaaatattactgttattataaacagtgcaaaatgtgcaaatatcccttttttgtatgtaatttaaagagtttttgtatgagaattcatttttaataaaagttttaagatGTCA

Function

symbol description
txnipa Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in protein transport. Predicted to be active in cytoplasm. Is expressed in several structures, including Kupffer's vesicle; cardiovascular system; endocrine system; mesoderm; and nervous system. Orthologous to human TXNIP (thioredoxin interacting protein).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030804-10 Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in protein transport. Predicted to be active in cytoplasm. Is expressed in several structures, including Kupffer's vesicle; cardiovascular system; endocrine system; mesoderm; and nervous system. Orthologous to human TXNIP (thioredoxin interacting protein).

Ensembl:

ensembl_id ENSDARG00000036107

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028049 False 2753 mRNA 0.44 6 24488403 24492326
TCONS_00029909 True 763 lncRNA 0.35 2 24490715 24492326

Neighbor

gene id symbol gene type direction distance location
XLOC_014065 NA coding upstream 39205 24448021 ~ 24449198 (+)
XLOC_014064 si:dkey-81h8.1 coding upstream 88565 24394560 ~ 24399838 (+)
XLOC_014062 sema4ab coding upstream 96033 24324967 ~ 24392370 (+)
XLOC_014063 NA coding upstream 143745 24344005 ~ 24344658 (+)
XLOC_014061 BX548249.1 coding upstream 264734 24077935 ~ 24223669 (+)
XLOC_014067 BX530091.1 coding downstream 77039 24569365 ~ 24573197 (+)
XLOC_014068 si:dkeyp-92c9.4 coding downstream 82751 24575077 ~ 24589243 (+)
XLOC_014069 si:dkeyp-92c9.2 coding downstream 103998 24596324 ~ 24597277 (+)
XLOC_014070 NA coding downstream 107702 24600028 ~ 24604330 (+)
XLOC_014071 NA coding downstream 264526 24756852 ~ 24758083 (+)
XLOC_014054 NA non-coding upstream 571308 23912228 ~ 23917095 (+)
XLOC_014055 CR677591.1 non-coding upstream 575103 23913182 ~ 23913300 (+)
XLOC_014072 NA non-coding downstream 265845 24758171 ~ 24760474 (+)
XLOC_014073 NA non-coding downstream 310216 24802542 ~ 24802792 (+)

Expression


Co-expression Network