XLOC_014074 (si:ch211-195b13.1)


Basic Information

Item Value
gene id XLOC_014074
gene name si:ch211-195b13.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24872159 ~ 24889227 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028053
CGAGGGACCTGGGAAGCCATTAGAAGCTTATAGCACAATTAAGCAGCACAGAAGTGGACGCAGGTATTGCCCTAGTGACTGATGTAACCTGGAAACTGGTTTCCCTTGGGCGGATCCAGAACACCCGTGAGACGAGCTGCCATTCGACACCTGtcgcttttgttttgtttgcaagaCTCAGGAACAAGGTAGCCGGGAGGGCAAGAATAGATGCGTCACTAGTCTCTTGTTTCAGCTATCACTGAACTATGAGAAGAGCGAACGAAGAGAGGCGAGAGATACTTAACGAAGAGTGATGAGGCCAATAATTTGCTGATGTTGGAAACTGAGGAGATGAGACTGCCGCTAACAATACTGCAGCACTAGAGATTTagacacacacctacacacacccACATGCAATTGCACAGGCAAAGAAATGATGCAAAATGATGATCTGCTGAGGATACGGCGGTAAATTTCTGTTCGGCTTTTAAAAGGATTTCTAGTGCTGATAGAAGAAGGATCCCGTTTGGATTGAGGGACTCTGTGATAAATGAACATGAAGACTGGAAAGAAATCATTCATAGCTTTTATTAAAGAAAGGAAGATGGGCTTGAACGACTTCATCCAAAGGCTTGTCTCCAACCCTCCCATCTGTCAACAtgCTGATGTTGGTTCCTTTCTAAAAATTGATGAGAACCAGAATGAGGAACTGGATGAGAATCTTCTGTGTTTGACCCATCCTAGGAGCTCTTTGGCTGAGGAGACTCAGATCAAACCCTCAGATTTTGACTACTTAAAGATCATCGGCAAGGGGAGCTTTGGGAAGGTTCTGCTTGCGCGGCACAAGGAAAACGAACTCTACTATGCTGTGAAGGTGCTTCAGAAGAAAATCATTATGAAAAAGAAAGAGCAAAAGCATATCATGGCAGAAAGGAGTGTACTAATGAAAAATATCAAACATCCATTCCTGGTGGGTCTGCACTACTCTTTCCAAACCACAGACAAACTGTATTTCGTGCTAGACTACGTCAATGGAGGCGAGCTGTTTTACCACCTCCAGCGTGAGAGAGTGTTTTTGGAGCCCAGAGCGAGGTTTTATGCTGCTGAAATCGCTAGTGCACTTGGTTACCTCCACTCACTGCACATAGTTTACAGAGACTTGAAGCCAGAGAACATCCTCTTGGACTCTCAGGGCCACATTGTGCTGACAGATTTCGGTCTATGCAAAGAGGGACTGGATCCCAACGGCACAACCACAACATTTTGTGGAACTCCTGAGtaCCTAGCACCCGAAGTACTCCAGAAACAGGCCTATGATCGTACAGTAGACTGGTGGTGTCTGGGATCAGTACTGTTTGAGATGCTGTATGGACTGCCTCCATTCTACAGTCGCAACACAGCCGAGATGTACAACAACATTCTACACAAGCCTCTTGTTCTGAAGCCTAATGTGTCCAATGCTGGCCGTGACCTGCTAGAGGGCTTGCTGCACAAAGACCGTACCAAGAGACTGGGGTCCAAGGATGATTTTttGGAATTGAAGTTTCACAGCTTCTTCTCTCCCATCAACTGGGACGATCTCATGGCCAAAAGGATTGTGCCTCCATTCATTCCTACAGTGACTGGTCCTACTGACCTCCGGCACTTTGATCCAGAGTTCACCCACCTTCCTGTGTCGACCTCTCTATGCAACACCGATAACCTACACGTGACCAGCAGCGTCCGAGAAGCAGCCGGAGCGTTCCCTGGTTTTTCCTACGGTCCTCCATCTGATGCCTTCCAGTAA
>TCONS_00028054
CACCCGACAGCCTGGCATCTCAGTCCAGTAGTGCGCTTCAACAAGCGGTTTAGAACGGGAGATCAGCGCGCTCTGAAGGAATACACTCCTCCTGTGGATTTATACTTCTTAAATAAGTGATGGCAGTTACTCAGGCTGGATGTGATTTGACATACTGCAAGATGAGAGGAATCGTGTCTGTTCTTGCCGCTTTTATTAAAGAAAGGAAGATGGGCTTGAACGACTTCATCCAAAGGCTTGTCTCCAACCCTCCCATCTGTCAACAtgCTGATGTTGGTTCCTTTCTAAAAATTGATGAGAACCAGAATGAGGAACTGGATGAGAATCTTCTGTGTTTGACCCATCCTAGGAGCTCTTTGGCTGAGGAGACTCAGATCAAACCCTCAGATTTTGACTACTTAAAGATCATCGGCAAGGGGAGCTTTGGGAAGGTTCTGCTTGCGCGGCACAAGGAAAACGAACTCTACTATGCTGTGAAGGTGCTTCAGAAGAAAATCATTATGAAAAAGAAAGAGCAAAAGCATATCATGGCAGAAAGGAGTGTACTAATGAAAAATATCAAACATCCATTCCTGGTGGGTCTGCACTACTCTTTCCAAACCACAGACAAACTGTATTTCGTGCTAGACTACGTCAATGGAGGCGAGCTGTTTTACCACCTCCAGCGTGAGAGAGTGTTTTTGGAGCCCAGAGCGAGGTTTTATGCTGCTGAAATCGCTAGTGCACTTGGTTACCTCCACTCACTGCACATAGTTTACAGAGACTTGAAGCCAGAGAACATCCTCTTGGACTCTCAGGGCCACATTGTGCTGACAGATTTCGGTCTATGCAAAGAGGGACTGGATCCCAACGGCACAACCACAACATTTTGTGGAACTCCTGAGtaCCTAGCACCCGAAGTACTCCAGAAACAGGCCTATGATCGTACAGTAGACTGGTGGTGTCTGGGATCAGTACTGTTTGAGATGCTGTATGGACTGCCTCCATTCTACAGTCGCAACACAGCCGAGATGTACAACAACATTCTACACAAGCCTCTTGTTCTGAAGCCTAATGTGTCCAATGCTGGCCGTGACCTGCTAGAGGGCTTGCTGCACAAAGACCGTACCAAGAGACTGGGGTCCAAGGATGATTTTttGGAATTGAAGTTTCACAGCTTCTTCTCTCCCATCAACTGGGACGATCTCATGGCCAAAAGGATTGTGCCTCCATTCATTCCTACAGTGACTGGTCCTACTGACCTCCGGCACTTTGATCCAGAGTTCACCCACCTTCCTGTGTCGACCTCTCTATGCAACACCGATAACCTACACGTGACCAGCAGCGTCCGAGAAGCAGCCGGAGCGTTCCCTGGTTTTTCCTACGGTCCTCCATCTGATGCCTTCCAGTAATGGCACCTTCCAAGACACCTTCCATTCCAGCATCAGTAGAAGCAATGTGACAGAAGTAGGACCACATGATGGGACACTTAGCTCTTCCAATTTATTTTCATGTACGACCTCACAGCACAAATGGACACTCGTGCATGTCTGAGATGAATGCGGAACACTGTAGGAAAGAGACTACAATAAAAACTTCCAGAAAACGTGAATTGTGTGCCAACGGATGCAGAGGACCTGAGCTCATCGAAGAAAGAGCTTAGAAGTGCCTGAGAGATTATTTGTGGGGGAAACATACAAGCAAATTTCTATAAAACAGACAATGGTTTGCCCGAGTTATGAAGATGGCACCAGCTATTGGGCGAAATGCCTTCTGTGATCGTTACATTTGATCAACTTGTCATTGAATgatgttttgtttaattgtatttttcatgCATCGTTGCACAGTGAAGGTGAAGGATCAAGAAAAGTACAAAATATATGGATAGTCATTAAAAAAGGGGGTTGTTATGTCATCAACCCCCATCACAGGATACACAGGCTGTCCGACTCAAATATCAATACATTTTTAGAGCATATGTTTAATATCTTCCTCCTATTgacaaatgttaatttaataactgcattatttatcattttagtgTGGTTTGAATGAACTCTTCTAAAAACTTTGTGAACGGTAGTAAGACATTAGGTTTATATTAGAAGACAAACTAGTTTAGATAACGCAACCAAAAGGATTTTATCTGTGACTATTTGTCTGAATCAGTAGAAGACATCCTGTGTTCCTCCTAAAATGAATGTTTTGTCTTACAAGTactttctttccttttcttttctccAATGCCAGCACTTTTACAAAATATGCCAGACACTGTGTTTCTTGGAAAGTCATGTTCTTTTTGTCATACAGGTAGTGAGATGGatgtatattttatacattgtTGTTATCTGAAGCGACTGTTGTACACTGCAAAAACAGCATGTTGATTAGATTGTACTGAAACCATTTGCATCATGTACAGACGTTATATATATAGTAGCCCAGAAGGAACCGTGTCTTTATTTTGTTCAAATTGTGCCTGTTCAGCTAATTTATGTATGTTGTGATACATTTCCACATGTGTCTATCATTCCTGTCTGTATCATTGTGGGTTGGACAGGGATATGGAGTGCTGTGCAATAGAAATGATGACTTGGGTACGATGTGAACAATTTGTCATCATTGGGACGAATGAGCGGTATCGGCTTAATGAAGGAGAGAGGTTTGGATGCCCTCATGAAAAGCATCCCTATTTTAACTGTAATATATTTCATATCATTGGACCAATAATGTGCTATACGTCGTTCTTTAGATAACTACGAACATGGCAATATGGATAAAGTTTATTTTCTTCCATTTTCGGAAGTCATTCACATATATGGTTTTATATTTTtccatgtatatttatttacatgtcaCATATATTACCTCTAATGATCAGAGTGTTAAATTCATAGAATGATGAAATGTTGGACAATGATCTATATGAatgctaataaatatttaataataaa
>TCONS_00028055
TCAAGAGTGCTAATGGCATCTTATGCCACAGGTTCTGCTTGCGCGGCACAAGGAAAACGAACTCTACTATGCTGTGAAGGTGCTTCAGAAGAAAATCATTATGAAAAAGAAAGAGCAAAAGCATATCATGGCAGAAAGGAGTGTACTAATGAAAAATATCAAACATCCATTCCTGGTGGGTCTGCACTACTCTTTCCAAACCACAGACAAACTGTATTTCGTGCTAGACTACGTCAATGGAGGCGAGCTGTTTTACCACCTCCAGCGTGAGAGAGTGTTTTTGGAGCCCAGAGCGAGGTTTTATGCTGCTGAAATCGCTAGTGCACTTGGTTACCTCCACTCACTGCACATAGTTTACAGAGACTTGAAGCCAGAGAACATCCTCTTGGACTCTCAGGGCCACATTGTGCTGACAGATTTCGGTCTATGCAAAGAGGGACTGGATCCCAACGGCACAACCACAACATTTTGTGGAACTCCTGAGGTAAGCCATTCCCATTCATGAAAAACACTTATAGACTGAAGTTGATTGTGCTGAATGTGCCC

Function

symbol description
si:ch211-195b13.1 Predicted to enable potassium channel regulator activity and protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; neuron projection morphogenesis; and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0015459 potassium channel regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7626 Predicted to enable potassium channel regulator activity and protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; neuron projection morphogenesis; and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000016623

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028053 False 1771 mRNA 0.47 12 24872159 24887679
TCONS_00028054 False 2939 mRNA 0.41 12 24882845 24889227
TCONS_00028055 True 546 lncRNA 0.45 4 24885116 24885945

Neighbor

gene id symbol gene type direction distance location
XLOC_014073 NA coding upstream 69367 24802542 ~ 24802792 (+)
XLOC_014072 NA coding upstream 111685 24758171 ~ 24760474 (+)
XLOC_014071 NA coding upstream 114076 24756852 ~ 24758083 (+)
XLOC_014070 NA coding upstream 267829 24600028 ~ 24604330 (+)
XLOC_014069 si:dkeyp-92c9.2 coding upstream 274882 24596324 ~ 24597277 (+)
XLOC_014075 eya3 coding downstream 2520 24891747 ~ 24917208 (+)
XLOC_014076 NA coding downstream 33304 24922531 ~ 24935295 (+)
XLOC_014077 NA coding downstream 70002 24959229 ~ 24983508 (+)
XLOC_014078 NA coding downstream 114290 25003517 ~ 25060967 (+)
XLOC_014079 CR855860.2 coding downstream 262189 25151416 ~ 25152577 (+)
XLOC_014067 BX530091.1 non-coding upstream 298962 24569365 ~ 24573197 (+)
XLOC_014081 CR855860.3 non-coding downstream 286045 25175272 ~ 25175392 (+)

Expression


Co-expression Network