XLOC_014080 (si:ch211-239d6.2)


Basic Information

Item Value
gene id XLOC_014080
gene name si:ch211-239d6.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25154066 ~ 25155258 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028061
TTCTCAGCTGAGCACATTTCAGACTGTCAGAGATGCAGCGAGAGCGCGCAGATGTGCTGCTGGTCAGAAGAAGAAAATACAAGAAATATTCCAAACAGAGGATGACTTACCTTGGTCTGATCGCTTATGCAATTCAAAACTCACCTGAGAAAAAGTTAATGTTTTGTGAGaTAATGAACGCGGTGGGGATATTCGTGAATGGGGATAAAAAAGGCATTGAGAATAATATTCGAGTCTGTTTATCATCTAACAGATGTTTTGTAAAGGTGCCTACAAATCCGAAGTGCCCGAATGCAAAACGCAATTTTTGGAAAATGGATTTTAAAGAAATCACCCCAAACATACTTCGACGACACTTTGGTGGTTTGCGTGATGTTTCCCCGGCCTTTTATGAAAACATGGCAAAACAAACTGCGAAAAATACGACGAAAAACAGCGCAACCTGTAAACGTCTGGAGACGCAAAAGAAGTTTTCCAGCTCGTTTTCCATCGAGTCACTTTTGAAGCGGGAAAGCAGCGTCACCGTGTGGCCACATTGTGCAAACAGGAATGCCGAAAATGAATCTCTGAGCTCAACAGAAGACCGCACGAGGAAGACATTTGACACTCAAAATGCATACTGTCAAACGTATTCACATTTTTCTTTTCCTGCTCACCATTTTGGCCAAATGAATTATGGATACAGCTCTTGCAGTGGACCTAGTAAAAGAATGTGCTACTTTTCCGAACTGGCTTACAGGCAAAACTGCACTTAATTTACTTATTGTTCGTCTATCATTTTTTCTGAATTACCACACCCTGAAAACTTTTCATTTGCCAAATAAATGTGCGATGTTGGt

Function

symbol description
si:ch211-239d6.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103700

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028061 True 839 mRNA 0.41 3 25154066 25155258

Neighbor

gene id symbol gene type direction distance location
XLOC_014079 CR855860.2 coding upstream 1489 25151416 ~ 25152577 (+)
XLOC_014078 NA coding upstream 93099 25003517 ~ 25060967 (+)
XLOC_014077 NA coding upstream 170558 24959229 ~ 24983508 (+)
XLOC_014076 NA coding upstream 218771 24922531 ~ 24935295 (+)
XLOC_014075 eya3 coding upstream 236858 24891747 ~ 24917208 (+)
XLOC_014081 CR855860.3 coding downstream 20014 25175272 ~ 25175392 (+)
XLOC_014082 rpa3 coding downstream 309767 25465025 ~ 25467185 (+)
XLOC_014083 col28a1a coding downstream 320970 25476228 ~ 25512695 (+)
XLOC_014084 sdhaf3 coding downstream 371096 25526354 ~ 25548630 (+)
XLOC_014085 tac1 coding downstream 494368 25649626 ~ 25653185 (+)
XLOC_014073 NA non-coding upstream 351274 24802542 ~ 24802792 (+)
XLOC_014087 BX842609.1 non-coding downstream 1037564 26192822 ~ 26192936 (+)
XLOC_014090 FP017254.1 non-coding downstream 1421336 26576594 ~ 26576708 (+)
XLOC_014093 FP085398.3 non-coding downstream 1650508 26805766 ~ 26805882 (+)
XLOC_014097 NA non-coding downstream 1878615 27033873 ~ 27041528 (+)

Expression


Co-expression Network