XLOC_014083 (col28a1a)



Basic Information


Item Value
gene id XLOC_014083
gene name col28a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25476228 ~ 25512695 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00028064
actgtatgtctGTGAGCTAATGGCTGATAAGACGTGCATAAAACATTTGACAGGAATACAGGAATCAAGGCTGTCAGAATAATCGCCCTCCCAATCCACTAACAAAAGGGGGTTTAACTCTATGAGTCCCAGAGCAGTGAGCCGGTTACTGTCGGGATACTGGCACACTGAGCTCTGACACACTATAGAGAGGGTATTACTGCATTATTCACTCATTATATGCCTGGCTTCAATGAAACTTTGCTTATTCTGCCTCTCGCTTTTTCAAACGGAGATATCAGACTTCATGAGGATGTAACAGGAGCTCAATGACTGGACTGGATTATTAAGGAGAAGGACAGTACAGCAGTGAACATATAGAGTGACATTGTGAATGAACAAGAAGGATGCAGTGTGGTGCAGTGATGCTGTGTCTGCTGCTGCTTATTCTGTGCTGTAGTGCCAGAAGCcagaacagaagaaaaaacagacAGAAGCCCGACAACAATGTCAACACAAATGGAGTCAAAACTTTATTCTGTCCAGTGGAGCTGGCGTTTTTGGTGGACAGCTCAGAGAAAGCCACAATGCTGTTTGAGAGGCAGAGGGAGTTTGTGTTGCGCTTCAGCACCAGGCTGACGCAGATGCAGGTTCCCGGCTGGCGGATGCGGGTGAGACTCGCCGTCCTGCAATACAGCAGCACCGTCTCACTGGAGCACAACTTCCGGGACTGGCAGGACATAGATGTGTTCCAAAGCCGAGTTGATTCAATGACCTACATCGGCCATGGCACCTACTCAGCTTATGCCATCTCAAATGCCACTCAGCTCTTCACCCAAGAGACAGCACCTACTAGCTTTAGAGCAGCACTTTTACTGACAGACGGAGATGATCACCCACGCAGCCCCAGTGCTGTGACTGCAGCCTCCGATGCTAAGATCCACGACATCCATATGTTTGTTATTGGGTTGCCAGGATCTTCACGAGATGAGCAAGACTATGGTAGATTGAGGTCTATTGCCAGTGCTCCTCCCCAGCAATACCTCTTCAGCCTTACTGACCCACAGCTGGATGACAAGCTCTTCAGGGAACTGagTGAGCTTGCGAACAGAGCTTGTCCACAGCCCAAATCCTGTCTGTGTGAGAAAGGGGAGCGGGGTCTTCCCGGAAATCCAggTAAAGTAGGCGATGCAGGATTCGATGGACCTCCTGGTCCTAAAGGATCTAGAgGACAGCCTGGTTTAAATGGACGTCCAGGACTAGAAGGAATAAGGGGAAGACCAGGACTAAAAGGAGAAAAGGGCGGCAAAGGAGAATGTGGTGCCTCCGGGATAAAGGGAGATCAAGGCCCAGACGGATCTCCAGGACCACGAGGACCAAGAGGAGATAAGGGATTGACTGGCAACCCTGGTGACACTGGCCCTGAAGGCCCTGTTGGATCTAAAGGTGAGCGAGGACCTAGTGGacccactggccctccaggagaTCCAGGGGTCGGCTTTCCTGGTGCAAAGGGGGAGAAAGGTAGCCAAGGCAGGCCAGGGCCCACTGGACCTGTTGGTATAGGAGAGCCTGGAATGCCTGGGCCACCAGGAACTCAAGGTGTTCAAGGCAATCAAGGGTTTCCTGGCGAGGGTTTACCAGGACAAAAGGGTGACAGAGGATTTGAGGGCCCTAAAGGTGTACGAGGACCTCCTGGGTCAAGCATTAAGGGTGATAAgGGTAACACAGGAGAACGGGGTTTACCTGGACTGGTGGGATTTCCAGGAGCTGGGATCCAGGGTGAAAAGGGGGATCTAGGACCTATAGGACCACCTGGACCAAGAGGCCCTCCTGGAGTGGGCTTGGTTGGCCCAAAGGGAGATCAGGGCTTTCCAGGAGAATCTGGACCACAAGGAGAGAGAGGAATAGGAGAACCAGGACCAAAAGGGGAACCAGGACCAGTCGGAGCACCTGGTATTCCTGGAATTCCAGGTGAAGATGGTTCTGTAGGTCCAAAGGGTGAGATGGGTTTATCTGGTGAAAGAGGTCAAGAGGGCTCACCTGGGAAAGGAATTCCTGGTGAAAAGGGGGACAGAGGTGATAGAGGATCTCGGGGTCCCCCAGGAAGCTCTGGAGCAGCGGGACCACCAGGGGCCAAAGGAGAACCAGGAAGTTTAGGAATGATGGGATTACCAGGACCTTCAGGTCGAGGATTACCTGGTGCCAAGGGTGAGCCAGGACCTGCAGGCCCTCCTGGTCATGTTGGAGAGCCAGGTGTTGGGACTACAGGACCTAAGGGAGACAGAGGAAGTCCGGGACCAGTAGGACCACAAGGAATGAAAGGGGATGGATATCCTGGACCACAGGGTCTTCCAGGGTTGCCTGGGCTCCCAGGTGAAATTGGGCCTGAAGGACAGGGAATTCCAGGACCAAAGgGAGACAGGGGCTCACCAGGGGTTACTGGCCCATCAGGACCTCCAGGAATTGGACTGCCTGGACCAAagGGTGCCGTTGGGCAGCCTGGTGCTCCTGGTCTTTCAGGCCCACCAGGAGAGGGAATTCAGGGTCCCAAGGGTGACCCTGGATTTCAAGGGCTTCCTGGCCCAAGAGGCCCTCCAGGTGATGGTCTGCCAGGGGAGAAGGGGGACAGAGGCCTATCAGGAGAGCGTGGGAGAAAAGGAGAAAGAGGAGAACATGGAATGCCTGGACAAACAGGATCCAAGGGAAAGCCTGGAGAGAAGGGAGATCCTGGCCTATCTAGAGAAGAGGTGATCAAAATAATCCGGGAAATATGTGGGTGTGGTGTGAAATGCCGGACGAGTCCACTGGAGCTGGTGTTTGTTATCGACAGCTCAGAAAGTGTGGGTCCAGATAACTATGAAGTGGTGAAGGATTTCGTAAACTCTCTGATTGATCATGTGTCTGTAAGCCGTGAGGCCACACGTGTTGGGGTGGTGCTCTACAGTCACGTGGAGGTGGTGGTGGCCAGTCTGCAACAGCTGTATGACCAGGCTGCTGTCAAGACTGCTGTGCGCAGGATGCCATACCTGGGTGAGGGCACCTTTACAGGGAGTGCCATCCGACGGGCAACTCAGCTGTTCCAAGCAGCACGACCAGGAGTTAGAAAGGTTGCGGTTGTGCTGACGGATGGCCTGGCAGACAACCGGGATGCAGTGAGTTTAAAAGATGCTGCAGAAGGTGCACACAGTGCTGGGATTGAAATCTTTGTAGTTGGTATTGTGAACAACAGTGACTCTCAGTATGCAGAGTTTAAGAATGAGATGAACATTCTGGCATCTGATCCAGATGAAAATTATGTCTACTTGACTGATGACTTCTTGAAACTGCACGCGCTGGAGAGTAGATTGTTGAATCATATCTGTGAGCATGACAATGGAAAGGTCTTCAGCTCGAGTGGCAAAACAATCCATCCTTTTGGACCTGATCCTGTTCCAGACAGAACTGAGCCTCCCACCAGTGATTATTTCATCACAGAGGGCAAAGAGGATACACCTCCAATAGACTTTGAGACTTTGCCCCAGCAACCTGAAGACTATGATGACATTCATATTGACACTAGCTATTTTGATGGCTCTGTCAACGAGATTCCTTGGGTGACAGAGACCCCAGACGGAAATAAGACAAGACAACAGTCGTCCATCTCAGTAGTAGGACCTCAGACACCAATTAACTGGCaccatgttcaagaaagcagtccaCCTCCAAAAACTCTACAGCCACCTCACCCTGACAACTCGCTGAAACatGTAGGCTGTGGCCAGGGATTGGACCCGGGGCCCTGTAGGGAATACAGTGTGATGTGGTACTACGACCCGCAGGCCAATGCATGTGCACAGTTTTGGTACGGTGGCTGCCAAGGCAATAGCAACCGCTTTGAAACAGAGGACATTTGTAAAAGCACTTGTGTGCAGACATAACACACTCTGACAATGAAGCATCATTCAGCAGATTGTGTTTTTTATCAAGCTGTATCAGTCATGCACTATGcaggtgttttattattattattatagtaaaggTTTTTATGAGAACAGTAAAACTGTAGATCAGATTTGCCTGCATTATAGTGGCCAACACTTACAGTAATTATTGACTAGACTTAGCACTGCTACATTTTTTAGAGAATAACTTGCATATTCAAAGCAccacatttatatattttctattcacactgaatattttattttttgtgaatttcttactttttaatggggtatatgcactcagacttttattttcagccagccagcctcagtGATTTCGGTGAACTGTCCTTTCATTATAAACAGgccacgtttaaggtctgatttcttttaaaatcaatGACTGgcaaagaagcactgcattaaattccatttcctcCCACCATGtctttacagtttattttacctCGGTATTTTCAGAGGAGTTTCTGCTCTCGCCTACTGATTCTGATGGTGCTGCTAGCggtcttttgtcttgttttacacttgaacaagtatgaatgcttaagtctatttaactgaatgtattttagtgGCTttgcaacatcgatgctgtaaaaagaacgttaagaaatagaaaataatcacattaagctttcaccggaagtctatcattagctgaaaaacactagctgtgcatatagcccattgttcCTTCCATAGAAATAGTATTTTCTGTACGTTGCATCCAGTattgtaaatatttgtatttgtatttttgataATGCCTACCGGTGCTCAAATAGGAAATAATGGTGCTGGAAATCCCCCTTATTTtcacaaagtaaataaatatgcttGAATTTATATGCAGTTTTTAACATATTTGCTGAATTTGGGATCATTGTTTGAGTCTGACTTCAAAATAAATGTCTATATTTTTGtggataaaaaaaatgatttgtatAAAATCAAACTGTAATGTGCAAATGTATACTTCTAGAaattgataaatatttttttttactgtaatgaaCGGAACAATGAACAAAAATGACCTAAAACAAATTCAAGATAAGTGGGTAAAGTGAAATGAGAAAACCAAATGGAAAGCATCAGAttgcagttttacatttagatCTGTGCATAGGCCAACGGCAGAGACTGTGCAAACTCTCTCAtcataaacatatttatatagaattatctgttaaatatacagtatttatgttTAAGTTGTAATATATTGTATGATTAGAAGCATTTCGTTTCAAAGATGCTTATCCAAGATGCTCGTTCATGTTTCCTTATCAGTGAACTAATAAACTCACTTCACATACTCATTTA
>TCONS_00028065
ATGCAGTGTGGTGCAGTGATGCTGTGTCTGCTGCTGCTTATTCTGTGCTGTAGTGCCAGAAGCcagaacagaagaaaaaacagacAGAAGCCCGACAACAATGTCAACACAAATGGAGTCAAAACTTTATTCTGTCCAGTGGAGCTGGCGTTTTTGGTGGACAGCTCAGAGAAAGCCACAATGCTGTTTGAGAGGCAGAGGGAGTTTGTGTTGCGCTTCAGCACCAGGCTGACGCAGATGCAGGTTCCCGGCTGGCGGATGCGGGTGAGACTCGCCGTCCTGCAATACAGCAGCACCGTCTCACTGGAGCACAACTTCCGGGACTGGCAGGACATAGATGTGTTCCAAAGCCGAGTTGATTCAATGACCTACATCGGCCATGGCACCTACTCAGCTTATGCCATCTCAAATGCCACTCAGCTCTTCACCCAAGAGACAGCACCTACTAGCTTTAGAGCAGCACTTTTACTGACAGACGGAGATGATCACCCACGCAGCCCCAGTGCTGTGACTGCAGCCTCCGATGCTAAGATCCACGACATCCATATGTTTGTTATTGGGTTGCCAGGATCTTCACGAGATGAGCAAGACTATGGTAGATTGAGGTCTATTGCCAGTGCTCCTCCCCAGCAATACCTCTTCAGCCTTACTGACCCACAGCTGGATGACAAGCTCTTCAGGGAACTGTGTCCACAGCCCAAATCCTGTCTGTGTGAGAAAGGGGAGCGGGGTCTTCCCGGAAATCCAggTAAAGTAGGCGATGCAGGATTCGATGGACCTCCTGGTCCTAAAGGATCTAGAgGACAGCCTGGTTTAAATGGACGTCCAGGACTAGAAGGAATAAGGGGAAGACCAGGACTAAAAGGAGAAAAGGCTAGTATATTTGACTCAGGCGGCAAAGGAGAATGTGGTGCCTCCGGGATAAAGGGAGATCAA
>TCONS_00028066
ccaggagaTCCAGGGGTCGGCTTTCCTGGTGCAAAGGGGGAGAAAGGTAGCCAAGGCAGGCCAGGGCCCACTGGACCTGTTGGTATAGGAGAGCCTGGAATGCCTGGGCCACCAGGAACTCAAGGTGTTCAAGGCAATCAAGGGTTTCCTGGCGAGGGTTTACCAGGACAAAAGGGTGACAGAGGATTTGAGGGCCCTAAAGGTGTACGAGGACCTCCTGGGTCAAGCATTAAGGGTGATAAgGGTAACACAGGAGAACGGGGTTTACCTGGACTGGTGGGATTTCCAGGAGCTGGGATCCAGGGTGAAAAGGGGGATCTAGGACCTATAGGACCACCTGGACCAAGAGGCCCTCCTGGAGTGGGCTTGGTTGGCCCAAAGGGAGATCAGGGCTTTCCAGGAGAATCTGGACCACAAGGAGAGAGAGGAATAGGAGAACCAGGACCAAAAGGGGAACCAGGACCAGTCGGAGCACCTGGTATTCCTGGAATTCCAGGTGAAGATGGTTCTGTAGGTCCAAAGGGTGAGATGGGTTTATCTGGTGAAAGAGGTCAAGAGGGCTCACCTGGGAAAGGAATTCCTGGTGAAAAGGGGGACAGAGGTGATAGAGGATCTCGGGGTCCCCCAGGAAGCTCTGGAGCAGCGGGACCACCAGGGGCCAAAGGAGAACCAGGAAGTTTAGGAATGATGGGATTACCAGGACCTTCAGGTCGAGGATTACCTGGTGCCAAGGGTGAGCCAGGACCTGCAGGCCCTCCTGGTCATGTTGGAGAGCCAGGTGTTGGGACTACAGGACCTAAGGGAGACAGAGGAAGTCCGGGACCAGTAGGACCACAAGGAATGAAAGGGGATGGATATCCTGGACCACAGGGTCTTCCAGGGTTGCCTGGGCTCCCAGGTGAAATTGGGCCTGAAGGACAGGGAATTCCAGGACCAAAGG
>TCONS_00028067
ACCTCCAGGAATTGGACTGCCTGGACCAAagGGTGCCGTTGGGCAGCCTGGTGCTCCTGGTCTTTCAGGCCCACCAGGAGAGGGAATTCAGGGTCCCAAGGGTGACCCTGGATTTCAAGGGCTTCCTGGCCCAAGAGGCCCTCCAGGTGATGGTCTGCCAGGGGAGAAGGGGGACAGAGGCCTATCAGGAGAGCGTGGGAGAAAAGGAGAAAGAGGAGAACATGGAATGCCTGGACAAACAGGATCCAAGGTAAAAGCTTGTTACCAGTTAACCAATGTTGACATTACAAGAGGTGATCAAAATAATCCGGGAAATATGTGGGTGTGGTGTGAAATGCCGGACGAGTCCACTGGAGCTGGTGTTTGTTATCGACAGCTCAGAAAGTGTGGGTCCAGATAACTATGAAGTGGTGAAGGATTTCGTAAACTCTCTGATTGATCATGTGTCTGTAAGCCGTGAGGCCACACGTGTTGGGGTGGTGCTCTACAGTCACGTGGAGGTGGTGGTGGCCAGTCTGCAACAGCTGTATGACCAGGCTGCTGTCAAGACTGCTGTGCGCAGGATGCCATACCTGGGTGAGGGCACCTTTACAGGGAGTGCCATCCGACGGGCAACTCAGCTGTTCCAAGCAGCACGACCAGGAGTTAGAAAGGTTGCGGTTGTGCTGACGGATGGCCTGGCAGACAACCGGGATGCAGTGAGTTTAAAAGATGCTGCAGAAGGTGCACA
>TCONS_00028068
ACCAATTAACTGGCaccatgttcaagaaagcagtccaCCTCCAAAAACTCTACAGCCACCTCACCCTGACAACTCGCTGAAACatGTAGGCTGTGGCCAGGGATTGGACCCGGGGCCCTGTAGGGAATACAGTGTGATGTGGTACTACGACCCGCAGGCCAATGCATGTGCACAGTTTTGGTACGGTGGCTGCCAAGGCAATAGCAACCGCTTTGAAACAGAGGACATTTGTAAAAGCACTTGTGTGCAGACATAACACACTCTGACAATGAAGCATCATTCAGCAGATTGTGTTTTTTATCAAGCTGTATCAGTCATGCACTATGcaggtgttttattattattattatagtaaaggTTTTTATGAGAACAGTAAAACTGTAGATCAGATTTGCCTGCATTATAGTGGCCAACACTTACAGTAATTATTGACTAGACTTAGCACTGCTACATTTTTTAGAGAATAACTTGCATAT

Function


symbol description
col28a1a Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in intestine; liver; and muscle. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-84 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in intestine; liver; and muscle. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00028064 False 5252 mRNA 0.47 35 25476228 25512695
TCONS_00028065 False 936 mRNA 0.51 7 25478203 25492470
TCONS_00028066 False 940 mRNA 0.56 14 25497541 25504499
TCONS_00028067 False 730 mRNA 0.54 6 25504645 25506314
TCONS_00028068 True 476 processed_transcript 0.42 2 25508793 25511562

Neighbor


gene id symbol gene type direction distance location
XLOC_014082 rpa3 coding upstream 9043 25465025 ~ 25467185 (+)
XLOC_014081 CR855860.3 coding upstream 300836 25175272 ~ 25175392 (+)
XLOC_014080 si:ch211-239d6.2 coding upstream 320970 25154066 ~ 25155258 (+)
XLOC_014079 CR855860.2 coding upstream 323651 25151416 ~ 25152577 (+)
XLOC_014078 NA coding upstream 415261 25003517 ~ 25060967 (+)
XLOC_014084 sdhaf3 coding downstream 13659 25526354 ~ 25548630 (+)
XLOC_014085 tac1 coding downstream 136931 25649626 ~ 25653185 (+)
XLOC_014086 jarid2b coding downstream 458305 25971000 ~ 26156531 (+)
XLOC_014087 BX842609.1 coding downstream 680127 26192822 ~ 26192936 (+)
XLOC_014088 mylipa coding downstream 828041 26340736 ~ 26378655 (+)
XLOC_014077 NA non-coding upstream 492720 24959229 ~ 24983508 (+)
XLOC_014076 NA non-coding upstream 540933 24922531 ~ 24935295 (+)
XLOC_014090 FP017254.1 non-coding downstream 1063899 26576594 ~ 26576708 (+)
XLOC_014093 FP085398.3 non-coding downstream 1293071 26805766 ~ 26805882 (+)
XLOC_014097 NA non-coding downstream 1521178 27033873 ~ 27041528 (+)
XLOC_014104 NA non-coding downstream 2461970 27974665 ~ 27976483 (+)

Expression



Co-expression Network