XLOC_014084 (sdhaf3)


Basic Information

Item Value
gene id XLOC_014084
gene name sdhaf3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25526354 ~ 25548630 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028069
GGCCAGCAGAGGGCAGCAGCAGCTCCAATAACACACAGCGCTGCGGAGAAGAAACCAGCATGTACACAAGGGCATGCACTTGGTaataaattttatgtaattacTGTATTTGTATTAAGTAATCTGTCCGTCTCTCTTATAAGCTATGATTTAAGTAGCTCGTGTTCTGGGCTGCTGCAGTGCGTTATTGTGAATCATATCAGTTTCATACAAAGTTCACTGGCAGAAAAGTAGCCTAATGGCAAATCCAGCACATATATCAGCGGTTCGGACTTTGTATAAGAAAATCCTGGTGCTTCACCGATTTCTGCCCATTGACCTGCGGGCTCTGGGCGACCAGTATGTGAAGGATGAGTTCAGGAGACACAAGACTTCTTCAGATGAAGAGGCCAAACACTTCATGGTGGAATGGCAGAACTACAAAGACACCTTACAGACGCAGGTGCTGGAAGCAATGGGAAACAAGAAGCTGGTGTTTGGAGCTGATTTATCGCAAGACAAACTCAAACACTTTCAAGATGAGCAGATTGGGCAGCTTTATGAGCTTATGCTCGAGTCTacaaaacccaaccgacagtttgaTATTCAAGAGGAGGGAACGCCAAAGTAAGGGAAAAGAAAGGTGCTTTATCTCCTCTTCAAGGGGAATGGGGAGTCATCCCATTGGgacatattttgatttatttaagtaCTTTCGATCATAGCTAAGACTGAAGGTTACAataaagtccatgtgaaatcaaaatgtactgtgTTTACTTTGATAGACTTTAGGTGAAGAATTGGTCTGTGACCATTAATTAACCAAACAAagttaattcacacacacacataaaaagtttgttttggtaattttcaaTCAAAGATGAACCCTTTGCTTCTACATTGGGAGTTGTGGTCCTTCTCTGGTGATGTCAGATTGATGACTTCAGCCACAATTTTCCTAAAAACTCCCATCTTAATGTTAATTTGCTACAAGAGTGTAATGTGCAAAGAGAAAGCCCTGCCCC

Function

symbol description
sdhaf3 Predicted to be involved in mitochondrial respiratory chain complex II assembly and succinate metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrial intermembrane space. Orthologous to human SDHAF3 (succinate dehydrogenase complex assembly factor 3).

GO:

id name namespace
GO:0006105 succinate metabolic process biological_process
GO:0034553 mitochondrial respiratory chain complex II assembly biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-94 Predicted to be involved in mitochondrial respiratory chain complex II assembly and succinate metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrial intermembrane space. Orthologous to human SDHAF3 (succinate dehydrogenase complex assembly factor 3).

Ensembl:

ensembl_id ENSDARG00000036092

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028069 True 1010 mRNA 0.42 2 25526354 25548630

Neighbor

gene id symbol gene type direction distance location
XLOC_014083 col28a1a coding upstream 13659 25476228 ~ 25512695 (+)
XLOC_014082 rpa3 coding upstream 59169 25465025 ~ 25467185 (+)
XLOC_014081 CR855860.3 coding upstream 350962 25175272 ~ 25175392 (+)
XLOC_014080 si:ch211-239d6.2 coding upstream 371096 25154066 ~ 25155258 (+)
XLOC_014079 CR855860.2 coding upstream 373777 25151416 ~ 25152577 (+)
XLOC_014085 tac1 coding downstream 100996 25649626 ~ 25653185 (+)
XLOC_014086 jarid2b coding downstream 422370 25971000 ~ 26156531 (+)
XLOC_014087 BX842609.1 coding downstream 644192 26192822 ~ 26192936 (+)
XLOC_014088 mylipa coding downstream 792106 26340736 ~ 26378655 (+)
XLOC_014089 npr1a coding downstream 874960 26423590 ~ 26629117 (+)
XLOC_014078 NA non-coding upstream 465387 25003517 ~ 25060967 (+)
XLOC_014077 NA non-coding upstream 542846 24959229 ~ 24983508 (+)
XLOC_014076 NA non-coding upstream 591059 24922531 ~ 24935295 (+)
XLOC_014090 FP017254.1 non-coding downstream 1027964 26576594 ~ 26576708 (+)
XLOC_014093 FP085398.3 non-coding downstream 1257136 26805766 ~ 26805882 (+)
XLOC_014097 NA non-coding downstream 1485243 27033873 ~ 27041528 (+)
XLOC_014104 NA non-coding downstream 2426035 27974665 ~ 27976483 (+)

Expression


Co-expression Network