XLOC_014091 (ints3)


Basic Information

Item Value
gene id XLOC_014091
gene name ints3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26640096 ~ 26673855 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028078
CGCGATCGGAACACTTCCGCTAGGCCACCATGCCCTGCGGAAGTTGAATTGTTACAGTCGGACACTGTGGAAACACTGGAGTGGTAGCGCGAAGGTGGCGAAATAAGAGTCGTAAACACACTGTGGGCGCCTAGGACTGGGCGGAGAGAGGGTTAACCATTTCATAAGCCCCACAGACCCACCTAAACATTGAGAGAAGGGGTTCAAACAGCGCCCTAAACCCCCGTCTGGTCCCGTGTGTGTGGGCGCAGCGAGGCGGGAGGAGATGGAGCCCTCGCCGGCTAAGGGTAAAGCGCAGGGTCGCCTTCTGGTGTCCACCAGCCTGGACGCCAAAGATGAGCTGGAGGAGcGCTTGGAGAGGTGTATGAGCATCACCACATCTATAACCAATGGACTGTCAGAGCGGGAAGCTAATGATGCCCTCACTGCTCATgtgtgtaaGGGTCCACAGCAGCATGAGGAGGTGTGTCTGGGTCTCTTCACACTTCTTCTCACAGAGCCTCCACAAGCACAGCGGTGCTACAGGGACCTGACGTTGGTGAATCGTGACGGCATGAACGTGGTGCTCATGAAAATCAATCAGATCCTCATGGAGAAGTTTCTTAAGTTGCAGGATGTGTGCCGTACACAGCTGGTGTGGTTGGTTAGAGAACTGGTGAAGAGTGGAGTCATTGGAGCAGATGGAGTCCTCATGACGCTCATGAAACAGATCGCTGGGGGAGACATTTCCAGCAAAAACCTGTGGTTGGCAGAGAATGTGTTGGACATCTTAGTGGACCAGAGGGAGTGGGTGCTGAAGAGCGGGATGTTAGTGGCCATGTCTTTGTACACGTACCTGCGGCTCATAGTGGACCATGGTACGACAAGCCTGCTGCCCCTCAGACAAAGAGAGGTGGACTTCTGCATCGGGCTGCTCCGAGAGAGGttcatGGAGTGTTTTATCATCGGGAGGGATCTGGTCAGACTCTTACAAAATGTGGCTCGTATTCCTGAGATGGAGTTGGTGTGGCGAGACCTGCTGCACAGTCCTCAAACCCTCAGCCCACAGTTCACAGgtaTATTGCAGCTCCTTACCTCTAGAACCTCACGAAAGTTTCTGGCCTGTCGACTCACCCCTGACATGGAGACCAAGCTGCTGTTCATGACCTCACGGGTTAGGTTTGGTCAGCAGAAGCGATATCAGGACTGGTTTCAGCGGCAGTATCTGTCCACAGCTGAGAGCCAATCACTGCGCTGTGACCTCATTCGTTATATATGCGGTGTGGTTCATCCATCTAATGAAGTACTGAGCTCAGATATTTTGCCACGCTGGGCCATCATTGGCTGGCTTCTGACAACCTGCACGTCTAATGTTGCTGCATCAAATGCCAAACTGGCCTTGTTCTATGATTGGCTCTTCTTCAACCCAGAGAAAGACAGCATAATGAACATTGAGCCAGCCATTTTGGTGATGCATCACTCCATGAAGCCACATCCTGCCATTACAGCCACACTACTGGACTTCATGTGTCGGATCATCCCACACTTTTTCCCACCTCTTGAGGGTCAAGTGCGACAGGGCGTCTTCAACTCTCTCAActtcatcatggagaagagagtTCTGGCTCATCTAGCACCTCTGTTTGACAACCCTAAACTGGACCGTGAGCTGCGGTCTATGTTGAGAGAACGTTTCCCTGAGTTCTGCAGTTCCCCCTCACCGCCCACAGAAGTAAAAATGGAGGAATCTGTTCCTTTGGAGATGGATAATCATGTACTTGATAAGGAGGATGGTTGCTATGACAACACAGATGCTACCTTCAGTGACGATGAGGAGGAGCTGAACAACAAGGGTAAAAAACGAGAGTTCAGATTTCATCAGCTCAAAGAAACGTACATTGACGAACCTTCTGACATCACTCCATTTGTTGATCAATTGGACGAGGCACTTAAAGAAAGGGTCCTGCAGCTGCAGAAGGGGAGTGACACAGAAACACATTGTGAGGTCATGCAGGAAATTGTGGATCTCATTTTAGAGgaGGACTTTGACTCTGAGCAGATGTCCACTCTGGCTTCCTGTCTGGCTGAACTGTTTAAGAGTCACTTCAGAGGAGATGTGTTGCCTGAGGAGATCACAGAAGAGTCACTGGAGGAGTCTGTCTGTAAGCCGGTGTGTCTGATCTTCAGGAACTTGTGTCAGATGCAGGAAGACAACAGTGGCTTCTCTGTTCTGCTGGACCTGCTCGCTGAGCTCTACCAGAAACAGCCCAAAATCGGATATCACCTGTTGTACTACCTCAAAGCCAGcaaagcAGCATCAGGGAAGATGAGCCTGTACGAGTCGTTCGCTCAGGCTACAGCTCTGGGAGACCTGCACACCTGCTTGATGATGGACATGAAGGCCTGTCAGGAGGATGACGTGAGACTACTGTGCTACTTGACCCCCTCCATCTATTCAGAGTTTCCAGATGAGACTCTTCGTAGTGGCGAGCTCCTCAACATGATCGTGGCTGTCATTGACTCAGCACAGCTTCAGGAGCTTATGTGTCACGTGATGATGGGGAATCTGGTCATGTTTCGTAAAGACTCAGTCCTCAACATTCTCATTCAGTCTCTGGACTGGGAGACGTTTGAGCAGTACAGCACATGGCAGCTTTTCCTGGCACACAGTATCCCTCTGGAGACCATCATCCCCATTTTACAGCACCTCAAATACAAAGAGCATCCTGAGGCTCTGTCATGTCTGCTGCTGCAGTTGCGCAGAGAAAAGCCGAGTGAGGAGATGGTGAAGATGGTGTTGAGTCGACCGTATCACCAGGAGGATCAGTTCACCACCAGCATCCTCCGGCACTGGACAGCCAAACACGATGACCTGCTGGGAGAACATATTAAAGCCCTGCTCATTAAGAACAACAACATGCCTCGCAAACGACAGAGttTGAGGAGTTCCAGCAGTAAACTGGCTCAGCTGACCCTGGAACAGATGCTGGAACATCTGGACAGTTTGAGACTCAGTCTCAGCAACACAAAGAATAACTTTTTTTCCCAGACACCCATATTGCAGGCCCTACAGCATGTTCAGGCCAGCTGTGATGAGGCCCACAAAATGAGgtttagtGATCTTTTCTCATTGGCTGAGGAGTATGAGGATTCCTCCAAACCACCCAAATCCCGCCGCAAAGCCCCAGCGTCCTCACCACGATCCCGCAAAGGTGCAGCTCCTCAACCCTGCAATGAAGAGGAGAGCGTGTCCAGCAGTGCTTCGGAGGAAGAAGACTCCAAACCCAAAGCTTCGAAGAGGAAAAGGAAAGGCTCAGCAGTCGGATCTGACAGCGACTGAGATGAAAAACCCTCGACTTCACGCCAACCACACCCAACATAACCACGCCCCCTCTGCGATTGTGACGTCACTGGAGACTACCTGCCAATCATCTGCTCCAGCCACTCAGAGGCAGCCCGCCCAAAACACTCTCCTGGCTGCAGGGGCGGGACTCTACTCTTCTCTGGACTCGATGCACTGGAGCCTGGAAGACTGGGCTCTGCTTTCTCTAACCACTCGACCCCTTTGGCTGTTTCAGGCCTGAGAGCTAGGTGAAGTGTCAGGAAGGGCGCTGTGGAGAAAATCAagatccatgctggcacagactGACATGCAAACAAGACAGACTGCCTTAAAGAAGAGGTTTACTCAATGCTCCTCGACGGCCCACCCACAAAAATGAATGGCAAGGTGCTTCAAAGAGTGATTACCCACTAACTAATGAACCCAGACTGTAACATGAAGTACAGGGATCTTAAACCGATTCAAGATTTTACTGCATTTAGAGGTTCGTTTTGGAATACTGGAAAGCAGATTAAGGGTCTTCAGGTTCAAGCCTTTTATCTTTTCATGCTGAACAGACCTTCATAAATCCCGTGCCCATCATAAATAAAGATTGATGCTCTGTCCTGTTTGGATGATGTGGCTCTTCAGAGTGGATCCCGAGACTTTACGGCGGGTCTGCCGGTTTTTATCTCCTGTTTGAAACGCACAGAGACGCGAAAAGCAGGAGAGTACAAACAGAGGACTCGGCTTGATGGACTTTTTAAAGAATTCTTTCTACTGACTTATTTTCATAAAAACAGATTGTAACTATGTTAAAGGACtatgatattaataaaaaaggGCGGAAATGTTTGGTTTTCTTACCAAAA

Function

symbol description
ints3 Predicted to be involved in DNA repair; mitotic G2/M transition checkpoint; and response to ionizing radiation. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of SOSS complex. Orthologous to human INTS3 (integrator complex subunit 3).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0006281 DNA repair biological_process
GO:0070876 SOSS complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-060503-634 Predicted to be involved in DNA repair; mitotic G2/M transition checkpoint; and response to ionizing radiation. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of SOSS complex. Orthologous to human INTS3 (integrator complex subunit 3).

Ensembl:

ensembl_id ENSDARG00000016811

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028078 True 4173 mRNA 0.50 29 26640096 26673855
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Neighbor

gene id symbol gene type direction distance location
XLOC_014089 npr1a coding upstream 10979 26423590 ~ 26629117 (+)
XLOC_014090 FP017254.1 coding upstream 63388 26576594 ~ 26576708 (+)
XLOC_014088 mylipa coding upstream 261441 26340736 ~ 26378655 (+)
XLOC_014087 BX842609.1 coding upstream 447160 26192822 ~ 26192936 (+)
XLOC_014086 jarid2b coding upstream 483565 25971000 ~ 26156531 (+)
XLOC_014092 si:dkey-27c15.3 coding downstream 7993 26681848 ~ 26730250 (+)
XLOC_014093 FP085398.3 coding downstream 131911 26805766 ~ 26805882 (+)
XLOC_014094 FP085398.1 coding downstream 154647 26828502 ~ 26844582 (+)
XLOC_014095 nelfe coding downstream 248925 26922780 ~ 26932829 (+)
XLOC_014096 tnfa coding downstream 345577 27019432 ~ 27024019 (+)
XLOC_014081 CR855860.3 non-coding upstream 1464704 25175272 ~ 25175392 (+)
XLOC_014079 CR855860.2 non-coding upstream 1487519 25151416 ~ 25152577 (+)
XLOC_014078 NA non-coding upstream 1579129 25003517 ~ 25060967 (+)
XLOC_014097 NA non-coding downstream 360018 27033873 ~ 27041528 (+)
XLOC_014104 NA non-coding downstream 1300810 27974665 ~ 27976483 (+)
XLOC_014106 BX511306.1 non-coding downstream 1469280 28143135 ~ 28143254 (+)
XLOC_014109 NA non-coding downstream 2115113 28788968 ~ 28824390 (+)

Expression

Expression of XLOC_014091(ints3) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Expression of XLOC_014091(ints3) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_10248885_10261371 INTS3 coding CI01000054 null 10248601 ~ 10261371 (-)
bowfin (Amia calva) AMCG00012406 ints3,LOC106588323 coding CM030138.1 CM030138.1 17581376 ~ 17598072 (+)