XLOC_014095 (nelfe)


Basic Information

Item Value
gene id XLOC_014095
gene name nelfe
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26922780 ~ 26932829 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028087
TGGACATTTAAACTTGTAAAGAgctaattaaaactttttaagacccgCAGAAGACCTGTCAAGATGCTCATAAACTCATTTCATTACTGTCAGGAGTTTGGTTATCAATGTAGCTGCAGAGCTGGCTGTCACGTGAGCGACTTATGATTCATAGCAAGTAAATACTGAGCTGGCCCCATATATTATTACTCCGTGAAAGTCAAACACTTGAAACTGCAGATCTTTGATGAAACAGTAATAATATATTTTCCATACCTATTTTGTCCATGTCACTCAGCAGTTCTCCAGTTTCAATAAAGTTTCAGGCAGTCCTACAGGAAGCTGCGCAGAAGTAATGGGACGGAagtatatgcattttattttattttgtgctttATAATTTAACGATCTACGTGTGTGATCTAAATCACACTAAAGTATTGGTGCACTTTAAATAATAGATACTTTAAAATTATCTCAGTATGGACAAACGATTAATTTGACCTCCTTTCTCGGATGACAACAGATTACGTCATATTTACGCGCCAGGTCCAGCAAAATGGCAATATTTCCCAGTTCATTAACAGAAGACGAAGAAGCGCTGCAAAAGAAGTATGCTAAACTGAAGAAAAAGAAGAAGGCCCTAATGGCTTTGAAGAAACAGAGCTCCACCAATCAGACGAGTCAGACTGGACTGAAACGCACTTTGTCAGATCAGCCGGTGGTGGACACAGCGACAGCCACAGAGCAGGCCAAAATGCTAATCAAATCTGGGGCAATCAGTGCCATCAAATCAGAAAACAAGAACTCGGGGTTCAAGCGCTCCAGAATGCTTGAGGGTAAACTGAAAGATCCTGAGAAAGGTCCTGCCCCGGCATTCCTGCCATTTCAGAGGAGCGTGTCCACAGATGAGGAGCCTCCTGATTCCGCTAAACGAATCCACAGGAAATCCCTTTACGAGAGttttgttcctggagatcgatcTCGTGATGAAGAGGCAGGAATGCCAAGTCGAGATTCTGAGCGTGACCGGGAAAGGGAGATGGACTGGGAGAGAGATCGAgaaagagacagagacagagaaagGGACCGTGAAAGAGGTCGAGAGAGAGAACGGGACCGGGAACGGGAACGAGACAGGAGCCGGGATGGAGAAAGAGATCGAGAGAGGGACCGGGATCGAGACAGAGAacgagacagagagagagatggacCCTACAGACGGTCAGACTCGTATCCAGAGCGCAGAGGTGTGCGCAAAGGAAACACAGTGTATGTGTACGGCACCGGTTTAGTGGAGGACAGCTTGCGCACAGCCTTTGCTCAGCACGGCAACATCATTGACCTTTCAATGGACTCTCCACGCAATTGCGCTTTTGTCACCTTTGAGAAGATCGAATCAGCAGACCAGGCTGTGGCGGAGCTGAATGGCACCACTGTGGGTGACGTCAACATCAAAGTCAGCATTGCCAGGAAGCAGCCCATGCTGGATGCCGCCACAGGGAAATCTGTCTGGGCTTCTCTTGCGGTGCAGAACAGTGCCAAGGGCTCGTACAGAGACAAACGGAGCCAGGTCGTCTACAGTGAAGATTTCCTTTAGTTACTTgacatttgcttttgttttaaaacgtCGGCGTGAGATTTTGTCTAGGTACAGCAGACATGACTTTCACAGAAGTAAATCCTACTTTTCGGTTATTAATAACGCTCAGTGTGGACATTAAGCCCACTCATGTTTATGTCATTGTGTTCAATAAATCAGTCAATAAAATTTTCCATCAACATGTGCGGGGTGACGCTTCATAATATGTGCAAACACAATCGATTCTgattgtaaatgtgcaaaaaatcagttttaatgaAACGTCAATAAAGCATACCTTCGGAGGCAGAAATTAAAAGCCAGGCTGAGCTTTGAATTGTTGGGTTTCTGCTGTGTGGATCAAGCTTCTCCCTGCAAAAATCAACAACATTAGATGCTATTGATGAAATGAGCTGTAGTTCAGACACTGCAGTGCTCCAGCATTGCCTAAGGGGAAACAGAATACTGAGAATACAAATGCACAGGCATGCACTGTTACATAAACCATTTgcatacagaaataaataaccTTATATACACACATTACTCTGTAGGCCtgtgttttttttccctatttcTTGCCCCATAAAATAAGAATTTGTTTGAGAAAGAATATcatatcggtaacactttagaataactatccgttataactagttattagaccattaataaactgttagttaacaagttataaatgacttgttaaacaaaagttaatagtttgttaattatttacaactgtaccttatagatggctaatagataacttacaagccgttAGTTGACAAGTTGTAAATGGCTTCTTAActgtgttttaattatttataacgttacctaataaattagtaatagatcatgaacaagctgttagtaaataacttaataaaggcttgttaagtatcagttaatagtgtatatatgttattgggacgttattctaaagttgcagctattcttcatttattaactgttagtaaatgaggaatagttgcaactttagaataacgtcccaataacatgcttaagctaataactaacacttaactattatatttactcacactttacagatcagttgttcaccctataataacaccagtgaaacttttttattagaccactggtgtaattttaaatttttatttattttgttttcatgtttagcacttcatgggtttgtattcttgcatactgctgtactgccatgtcatggttcagtatgtgtgtttctatacattaaagacaacttttaacatttcatctgtggagtttctttggtaaaacacagcacacagaaaagcctataagtggaacaaggtttagaaacaaacattttatattttaaatattacatcaaatttctg
>TCONS_00028086
TGGACATTTAAACTTGTAAAGAgctaattaaaactttttaagacccgCAGAAGACCTGTCAAGATGCTCATAAACTCATTTCATTACTGTCAGGAGTTTGGTTATCAATGTAGCTGCAGAGCTGGCTGTCACGTGAGCGACTTATGATTCATAGCAAGTAAATACTGAGCTGGCCCCATATATTATTACTCCGTGAAAGTCAAACACTTGAAACTGCAGATCTTTGATGAAACAGTAATAATATATTTTCCATACCTATTTTGTCCATGTCACTCAGCAGTTCTCCAGTTTCAATAAAGTTTCAGGCAGTCCTACAGGAAGCTGCGCAGAAGTAATGGGACGGAagtatatgcattttattttattttgtgctttATAATTTAACGATCTACGTGTGTGATCTAAATCACACTAAAGTATTGGTGCACTTTAAATAATAGATACTTTAAAATTATCTCAGTATGGACAAACGATTAATTTGACCTCCTTTCTCGGATGACAACAGATTACGTCATATTTACGCGCCAGGTGAGGATTTACTGCAGACGCTCATCGCATAAAATTTATTCTTTGAATTTAGGGTAAATGCGTGTATTTTGCTGTATGTTATGCAACTTAcgattaaatatatatgtttgtgaaaaACACGATGCTATCTTGAGACTGAAAACAAAATACTTATGCTTGCTAAACatattgctgttgtttttctccttaAGGTCCAGCAAAATGGCAATATTTCCCAGTTCATTAACAGAAGACGAAGAAGCGCTGCAAAAGAAGTATGCTAAACTGAAGAAAAAGAAGAAGGCCCTAATGGCTTTGAAGAAACAGAGCTCCACCAATCAGACGAGTCAGACTGGACTGAAACGCACTTTGTCAGATCAGCCGGTGGTGGACACAGCGACAGCCACAGAGCAGGCCAAAATGCTAATCAAATCTGGGGCAATCAGTGCCATCAAATCAGAAAACAAGAACTCGGGGTTCAAGCGCTCCAGAATGCTTGAGGGTAAACTGAAAGATCCTGAGAAAGGTCCTGCCCCGGCATTCCTGCCATTTCAGAGGAGCGTGTCCACAGATGAGGAGCCTCCTGATTCCGCTAAACGAATCCACAGGAAATCCCTTTACGAGAGttttgttcctggagatcgatcTCGTGATGAAGAGGCAGGAATGCCAAGTCGAGATTCTGAGCGTGACCGGGAAAGGGAGATGGACTGGGAGAGAGATCGAgaaagagacagagacagagaaagGGACCGTGAAAGAGGTCGAGAGAGAGAACGGGACCGGGAACGGGAACGAGACAGGAGCCGGGATGGAGAAAGAGATCGAGAGAGGGACCGGGATCGAGACAGAGAacgagacagagagagagatggacCCTACAGACGGTCAGACTCGTATCCAGAGCGCAGAGGTGTGCGCAAAGGAAACACAGTGTATGTGTACGGCACCGGTTTAGTGGAGGACAGCTTGCGCACAGCCTTTGCTCAGCACGGCAACATCATTGACCTTTCAATGGACTCTCCACGCAATTGCGCTTTTGTCACCTTTGAGAAGATCGAATCAGCAGACCAGGCTGTGGCGGAGCTGAATGGCACCACTGTGGGTGACGTCAACATCAAAGTCAGCATTGCCAGGAAGCAGCCCATGCTGGATGCCGCCACAGGGAAATCTGTCTGGGCTTCTCTTGCGGTGCAGAACAGTGCCAAGGGCTCGTACAGAGACAAACGGAGCCAGGTCGTCTACAGTGAAGATTTCCTTTAGTTACTTgacatttgcttttgttttaaaacgtCGGCGTGAGATTTTGTCTAGGTACAGCAGACATGACTTTCACAGAAGTAAATCCTACTTTTCGGTTATTAATAACGCTCAGTGTGGACATTAAGCCCACTCATGTTTATGTCATTGTGTTCAATAAATCAGTCAATAAAATTTTCCATCAACATGTGCGGGGTGACGCTTCATAATATGTGCAAACACAATCGATTCTgattgtaaatgtgcaaaaaatcagttttaatgaAACGTCAATAAAGCATACCTTCGGAGGCAGAAATTAAAAGCCAGGCTGAGCTTTGAATTGTTGGGTTTCTGCTGTGTGGATCAAGCTTCTCCCTGCAAAAATCAACAACATTAGATGCTATTGATGAAATGAGCTGTAGTTCAGACACTGCAGTGCTCCAGCATTGCCTAAGGGGAAACAGAATACTGAGAATACAAATGCACAGGCATGCACTGTTACATAAACCATTTgcatacagaaataaataaccTTATATACACACATTACTCTGTAGGCCtgtgttttttttccctatttcTTGCCCCATAAAATAAGAATTTGTTTGAGAAAGAATATcatatcggtaacactttagaataactatccgttataactagttattagaccattaataaactgttagttaacaagttataaatgacttgttaaacaaaagttaatagtttgttaattatttacaactgtaccttatagatggctaatagataacttacaagccgttAGTTGACAAGTTGTAAATGGCTTCTTAActgtgttttaattatttataacgttacctaataaattagtaatagatcatgaacaagctgttagtaaataacttaataaaggcttgttaagtatcagttaatagtgtatatatgttattgggacgttattctaaagttgcagctattcttcatttattaactgttagtaaatgaggaatagttgcaactttagaataacgtcccaataacatgcttaagctaataactaacacttaactattatatttactcacactttacagatcagttgttcaccctataataacaccagtgaaacttttttattagaccactggtgtaattttaaatttttatttattttgttttcatgtttagcacttcatgggtttgtattcttgcatactgctgtactgccatgtcatggttcagtatgtgtgtttctatacattaaagacaacttttaacatttcatctgtggagtttctttggtaaaacacagcacacagaaaagcctataagtggaacaaggtttagaaacaaacattttatattttaaatattacatcaaatttctg
>TCONS_00028088
AGTAATGGGACGGAagtatatgcattttattttattttgtgctttATAATTTAACGATCTACGTGTGTGATCTAAATCACACTAAAGTATTGGTGCACTTTAAATAATAGATACTTTAAAATTATCTCAGTATGGACAAACGATTAATTTGACCTCCTTTCTCGGATGACAACAGATTACGTCATATTTACGCGCCAGGTCCAGCAAAATGGCAATATTTCCCAGTTCATTAACAGAAGACGAAGAAGCGCTGCAAAAGAAGTATGCTAAACTGAAGAAAAAGAAGAAGGCCCTAATGGCTTTGAAGAAACAGAGCTCCACCAATCAGACGAGTCAGACTGGACTGAAACGCACTTTGTCAGATCAGCCGGTGGTGGACACAGCGACAGCCACAGAGCAGGCCAAAATGCTAATCAAATCTGGGGCAATCAGTGCCATCAAATCAGAAAACAAGAACTCGGGGTTCAAGCGCTCCAGAATGCTTGAGGGTAAACTGAAAGATCCTGAGAAAGGTCCTGCCCCGGCATTCCTGCCATTTCAGAGGAGCGTGTCCACAGATGAGGAGCCTCCTGATTCCGCTAAACGAATCCACAGGAAATCCCTTTACGAGAGttttgttcctggagatcgatcTCGTGATGAAGAGGCAGGAATGCCAAGTCGAGATTCTGAGCGTGACCGGGAAAGGGAGATGGACTGGGAGAGAGATCGAgaaagagacagagacagagaaagGGACCGTGAAAGAGGTCGAGAGAGAGAACGGGACCGGGAACGGG
>TCONS_00028089
GATGACAACAGATTACGTCATATTTACGCGCCAGGTGAGGATTTACTGCAGACGCTCATCGCATAAAATTTATTCTTTGAATTTAGGGTAAATGCGTGTATTTTGCTGTATGTTATGCAACTTAcgattaaatatatatgtttgtgaaaaACACGATGCTATCTTGAGACTGAAAACAAAATACTTATGCTTGCTAAACatattgctgttgtttttctccttaAGGTCCAGCAAAATGGCAATATTTCCCAGTTCATTAACAGAAGACGAAGAAGCGCTGCAAAAGAAGTATGCTAAACTGAAGAAAAAGAAGAAGGCCCTAATGGCTTTGAAGAAACAGAGCTCCACCAATCAGACGAGTCAGACTGGACTGAAACGCACTTTGTCAGATCAGCCGGTGGTGGACACAGCGACAGCCACAGAGCAGGCCAAAATGCTAATCAAATCTGGGGCAATCAGTGCCATCAAATCAGAAAACAAGAACTCGGGGTTCAAGCGCTCCAGAATGCTTGAGGGTAAACTGAAAGATCCTGAGAAAGGTCCTGCCCCGGCATTCCTGCCATTTCAGAGGAGCGTGTCCACAGATGAGGAGCCTCCTGATTCCGCTAAACGAATCCACAGGAAATCCCTTTACGAGAGttttgttcctggagatcgatcTCGTGATGAAGAGGCAGGAATGCCAAGTCGAGATTCTGAGCGTGACCGGGAAAGGGAGATGGACTGGGAGAGAGATCGAgaaagagacagagacagagaaagGGACCGTGAAAGAGGTCGAGAGAGAGAACGGGACCGGGAACGGGAACGAGACAGGAGCCGGGATGGAGAAAGAGATCGAGAGAGGGACCGGGATCGAGACAGAGAacgagacagagagagagatggacCCTACAGACGGTCAGACTCGTATCCAGAGCGCAGAGGTGTGCGCAAAGGAAACACAGTGTATGTGTACGGCACCGGTTTAGTGGAGGACAGCTTGCGCACAGCCTTTGCTCAGCACGGCAACATCATTGACCTTTCAATGGACTCTCCACGCAATTGCGCTTTTGTCACCTTTGAGAAGATCGAATCAGCAGACCAGGCTGTGGCGGAGCTGAATGGCACCACTGTGGGTGACGTCAACATCAAAGTCAGCATTGCCAGGAAGCAGCCCATGCTGGATGCCGCCACAGGGAAATCTGTCTGGGCTTCTCTTG
>TCONS_00028090
ACGTCATATTTACGCGCCAGGTGAGGATTTACTGCAGACGCTCATCGCATAAAATTTATTCTTTGAATTTAGGGTCCAGCAAAATGGCAATATTTCCCAGTTCATTAACAGAAGACGAAGAAGCGCTGCAAAAGAAGTATGCTAAACTGAAGAAAAAGAAGAAGGCCCTAATGGCTTTGAAGAAACAGAGCTCCACCAATCAGACGAGTCAGACTGGACTGAAACGCACTTTGTCAGATCAGCCGGTGGTGGACACAGCGACAGCCACAGAGCAGGCCAAAATGCTAATCAAATCTGGGGCAATCAGTGCCATCAAATCAGAAAACAAGAACTCGGGGTTCAAGCGCTCCAGAATGCTTGAGGGTAAACTGAAAGATCCTGAGAAAGGTCCTGCCCCGGCATTCCTGCCATTTCAGAGGAGCGTGTCCACAGATGAGGAGCCTCCTGATTCCGCTAAACGAATCCACAGGAAATCCCTTTACGAGAGttttgttcctggagatcgatcTCGTGATGAAGAGGCAGGAATGCCAAGTCGAGATTCTGAGCGTGACCGGGAAAGGGAGATGGACTGGGAGAGAGATCGAgaaagagacagagacagagaaagGGACCGTGAAAGAGGTCGAGAGAGAGAACGGGACCGGGAACGGGAACGAGACAGGAGCCGGGATGGAGAAAGAGATCGAGAGAGGGACCGGGATCGAGACAGAGAacgagacagagagagagatggacCCTACAGACGGTCAGACTCGTATCCAGAGCGCAGAGGTGTGCGCAAAGGAAACACAGTGTATGTGTACGGCACCGGTTTAGTGGAGGACAGCTTGCGCACAGCCTTTGCTCAGCACGGCAACATCATTGACCTTTCAATGGACTCTCCACGCAATTGCGCTTTTGTCACCTTTGAGAAGATCGAATCAGCAGACCAGGCTGTGGCGGAGCTGAATGGCACCACTGTGGGTGACGTCAACATCAAAGTCAGCATTGCCAGGAAGCAGCCCATGCTGGATGCCGCCACAGGGAAATCTGTCTGGGCTTCTCTTGCGGTGCAGAACAGTGCCAAGGGCTCGTACAGAGACAAACGGAGCCAGGTCGTCTACAGTGAAGATTTCCTTTAGTTACTTgacatttgcttttgttttaaaacgtCGGCGTGAGATTTTGTCTAGGTACAGCAGACATGACTTTCACAGAAGTAAATCCTACTTTTCGGTTATTAATAACGCTCAGTGTGGACATTAAGCCCACTCATGTTTATGTCATTGTGTTCAATAAATCAGTCAATAAAATTTTCCATCAACATGTGCGGGGTGACGCTTCATAATATGTGCAAACACAATCGATTCTgattgtaaatgtgcaaaaaatcagttttaatgaAACGTCAATAAAGCATACCTTCGGAGGCAGAAATTAAAAGCCAGGCTGAGCTTTGAATTGTTGGGTTTCTGCTGTGTGGATCAAGCTTCTCCCTGCAAAAATCAACAACATTAGATGCTATTGATGAAATGAGCTGTAGTTCAGACACTGCAGTGCTCCAGCATTGCCTAAGGGGAAACAGAATACTGAGAATACAAATGCACAGGCATGCACTGTTACATAAACCATTTgcatacagaaataaataaccTT
>TCONS_00028091
ACGGCACCGGTTTAGTGGAGGACAGCTTGCGCACAGCCTTTGCTCAGCACGGCAACATCATTGACCTTTCAATGGACTCTCCACGCAATTGCGCTTTTGTCACCTTTGAGAAGATCGAATCAGCAGACCAGGCTGTGGCGGAGataaacagcacagtgacagacaagaatgaagcagatctctcttactacaCTGAATGGCACCACTGTGGGTGACGTCAACATCAAAGTCAGCATTGCCAGGAAGCAGCCCATGCTGGATGCCGCCACAGGGAAATCTGTCTGGGCTTCTCTTGCGGTGCAGAACAGTGCCAAGGGCTCGT

Function

symbol description
nelfe Predicted to enable RNA binding activity. Acts upstream of or within positive regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFE (negative elongation factor complex member E).

GO:

id name namespace
GO:1902038 positive regulation of hematopoietic stem cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:1901534 positive regulation of hematopoietic progenitor cell differentiation biological_process
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0032021 NELF complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040718-69 Predicted to enable RNA binding activity. Acts upstream of or within positive regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFE (negative elongation factor complex member E).

Ensembl:

ensembl_id ENSDARG00000004343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028087 False 2928 mRNA 0.40 11 26922780 26932829
TCONS_00028086 False 3119 mRNA 0.39 10 26922780 26932829
TCONS_00028088 False 779 mRNA 0.45 7 26923110 26928330
TCONS_00028089 False 1202 mRNA 0.48 9 26923274 26931297
TCONS_00028090 False 1638 mRNA 0.47 11 26923288 26931994
TCONS_00028091 True 322 nonsense_mediated_decay 0.53 5 26928624 26931433

Neighbor

gene id symbol gene type direction distance location
XLOC_014094 FP085398.1 coding upstream 78198 26828502 ~ 26844582 (+)
XLOC_014093 FP085398.3 coding upstream 116898 26805766 ~ 26805882 (+)
XLOC_014092 si:dkey-27c15.3 coding upstream 192530 26681848 ~ 26730250 (+)
XLOC_014091 ints3 coding upstream 248925 26640096 ~ 26673855 (+)
XLOC_014089 npr1a coding upstream 293663 26423590 ~ 26629117 (+)
XLOC_014096 tnfa coding downstream 86603 27019432 ~ 27024019 (+)
XLOC_014097 NA coding downstream 101044 27033873 ~ 27041528 (+)
XLOC_014098 ddx39b coding downstream 407019 27339848 ~ 27358545 (+)
XLOC_014099 ppp1r11 coding downstream 515796 27448625 ~ 27453644 (+)
XLOC_014100 atat1 coding downstream 546734 27479563 ~ 27515651 (+)
XLOC_014090 FP017254.1 non-coding upstream 346072 26576594 ~ 26576708 (+)
XLOC_014087 BX842609.1 non-coding upstream 729844 26192822 ~ 26192936 (+)
XLOC_014081 CR855860.3 non-coding upstream 1747388 25175272 ~ 25175392 (+)
XLOC_014079 CR855860.2 non-coding upstream 1770203 25151416 ~ 25152577 (+)
XLOC_014104 NA non-coding downstream 1041836 27974665 ~ 27976483 (+)
XLOC_014106 BX511306.1 non-coding downstream 1210306 28143135 ~ 28143254 (+)
XLOC_014109 NA non-coding downstream 1856139 28788968 ~ 28824390 (+)
XLOC_014110 NA non-coding downstream 2173106 29105935 ~ 29107694 (+)

Expression


Co-expression Network