XLOC_014098 (ddx39b)


Basic Information

Item Value
gene id XLOC_014098
gene name ddx39b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27339848 ~ 27358545 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028093
AGATTCGTCGCGAGTTGATGACGTTGTAGACAATCTATCTGGCAGGTGCAGTCAAATCCAACTGCTTCAAACAGTGTTTCGAGAATGACAGAGAACGATGTTGATAACGAGCTGTTGGACTATGAGGAGGATGAGGTAGATGCTGGTGGTGCAGGGGACGCAGGCCTTGGACACAGCGATGGCATCATATCCATCAGGAAAGAAGGCGTCAAAGGGTCATATGTGTCCATCCACTCCTCAGGGTTCAGAGATTTCCTTCTCAAACCAGAACTCCTAAGAGCGATAGTGGACTGCGGATTTGAACATCCATCTGAGGttcagcaTGAATGCATTCCTCAGGCCATCTTGGGAATGGATGTTTTATGTCAGGCCAAGTCTGGAATGGGGAAGACAGCTGTCTTTGTGTTGGCCACCCTTCAGCAGCTGGAGCCTGTGACTGGTCAGGTGTCAGTGCTGGTGATGTGTCACACACGAGAGCTGGCATTCCAGATCAGTAAAGAGTACGAGCGCTTCTCTAAATACATGCCCAGTGTCAAGGTGGCAGTATTCTTTGGTGGTTTGTCCATAAAGAAGGACGAGGAGGTGCTGAAGAAGGAGAGTCCTCATGTGGTGGTGGGAACTCCTGGACGGATTCTAGCTCTGTCCCGCAACAAGAGTCTCAACCTGCGCCACATCAAACACTTCATTCTGGATGAATGTGATAAGATGCTGGAGCAACTTGACATGCGTCGGGATGTCCAAGAAATCTTTCGAATGACCCCTCATGAGAAGCAGGTCATGATGTTCAGTGCCACCCTGAGCAAAGAGATCCGTCCTGTCTGCAGAAAGTTCATGCAAGATCCGATGGAAATTTTTGTGGACGACGAGACCAAGTTGACACTTCACGGCCTCCAGCAGTACTACGTCAAGCTGAAGGACAACGAGAAGAACAGGAAGCTCTTTGATCTCCTGGATGTGTTGGAGTTCAACCAGGTGGTGATCTTTGTGAAGTCGGTGCAGCGTTGTATTGCTCTCGCTCAGTTGCTGGTGGAGCAAAATTTCCCTGCCATTGCCATTCATAGAGCAATGCCCCAAGACGAAAGaCTAGCTCGATATCAGCAATTTAAAGATTTCCAGAGAAGGATCCTGGTAGCCACTAATCTGTTTGGCCGAGGTATGGACATCGAAAGAGTCAACATTGCCTTTAACTACGACATGCCTGAAGACTCTGACACGTACCTGCACAGGGTTGCACGGGCTGGCAGATTCGGAACAAAAGGTCTGGCCATCACCTTTGTGTCCGATGAAAATGATGCCCGCACTTTGAATGACGTTCAGGACAGGTTTGAGGTGAACATCAGTGAACTTCCAGAGGAGATTGACATCTCATCATACATTGAACAAACACGATAAAGATGACAACACTAAATGCAGGAGTTTCTTCAGAAGGATGCATGGGATTGTAGCATTTGATAGCAATTGAGTTTGTATTTCACTGTTCCAGTGTTAGTGAATACTTCTATGGCTCACATCGCTGCGTTATCCAGTATTGTGGTGGTTTCCTGACGCCTTCTTGGTTTCGTTTTTGCTTATTGAAAGttaataaatgcaatattttgttttttatgactttttttccTTTCGATATGAATTATTTTGTGTTTGGGatgtttgtttttactttgtttttaatgAAGAGATATACTTTATCATTTCTGTTGTGAGAGGAAGAGTTCTCATTTTTGGATTATAATGGGCTACACAGTTGACTGCAGTGAAGTAGAATTGATCAAAAGTTACTAAATATATTAGCAGTGTATGCTGAATGCTTGTTACCAGTGGAGTAGGtatttaaaacaatgtttgttCATTCAGTTGTCAACTGGCAGGCCACTTTGTTTAAACTACTCAATGCTTGTTAAACCAAATAAAGTATTGTTTGATTTACA
>TCONS_00028094
AATGACAGAGAACGATGTTGATAACGAGCTGTTGGACTATGAGGAGGATGAGGTAGATGCTGGTGGTGCAGGGGACGCAGGCCTTGGACACAGCGATGGCATCATATCCATCAGGAAAGAAGGCGTCAAAGGGTCATATGTGTCCATCCACTCCTCAGGGTTCAGAGATTTCCTTCTCAAACCAGAACTCCTAAGAGCGATAGTGGACTGCGGATTTGAACATCCATCTGAGGttcagcaTGAATGCATTCCTCAGGCCATCTTGGGAATGGATGTTTTATGTCAGGCCAAGTCTGGAATGGGGAAGACAGCTGTCTTTGTGTTGGCCACCCTTCAGCAGCTGGAGCCTGTGACTGGTCAGGTGTCAGTGCTGGTGATGTGTCACACACGAGAGCTGGCATTCCAGATCAGTAAAGAGTACGAGCGCTTCTCTAAATACATGCCCAGTGTCAAGGTGGCAGTATTCTTTGGTGGTTTGTCCATAAAGAAGGACGAGGAGGTGCTGAAGAAGGAGAGTCCTCATGTGGTGGTGGGAACTCCTGGACGGATTCTAGCTCTGTCCCGCAACAAGAGTCTCAACCTGCGCCACATCAAACACTTCATTCTGGATGAATGTGATAAGATGCTGGAGCAACTTGACATGCGTCGGGATGTCCAAGAAATCTTTCGAATGACCCCTCATGAGAAGCAGGTCATGATGTTCAGTGCCACCCTGAGCAAAGAGATCCGTCCTGTCTGCAGAAAGTTCATGCAAGATCCGATGGAAATTTTTGTGGACGACGAGACCAAGTTGACACTTCACGGCCTCCAGCAGTACTACGTCAAGCTGAAGGACAACGAGAAGAACAGGAAGCTCTTTGATCTCCTGGATGTGTTGGAGTTCAACCAGGTGGTGATCTTTGTGAAGTCGGTGCAGCGTTGTATTGCTCTCGCTCAGTTGCTGGTGGAGCAAAATTTCCCTGCCATTGCCATTCATAGAGCAATGCCCCAAGACGAAAGaCTAGCTCGATATCAGCAATTTAAAGATTTCCAGAGAAGGATCCTGGTAGCCACTAATCTGTTTGGCCGAGGTATGGACATCGAAAGAGTCAACATTGCCTTTAACTACGACATGCCTGAAGACTCTGACACGTACCTGCACAGGGTTGCACGGGCTGGCAGATTCGGAACAAAAGGTCTGGCCATCACCTTTGTGTCCGATGAAAATGATGCCCGCACTTTGAATGACGTTCAGGACAGGTTTGAGGTGAACATCAGTGAACTTCCAGAGGAGATTGACATCTCATCATACATTGAACAAACACGATAAAGATGACAACACTAAATGCAGGAGTTTCTTCAGAAGGATGCATGGGATTGTAGCATTTGATAGCAATTGAGTTTGTATTTCACTGTTCCAGTGTTAGTGAATACTTCTATGGCTCACATCGCTGCGTTATCCAGTATTGTGGTGGTTTCCTGACGCCTTCTTGGTTTCGTTTTTGCTTATTGAAAGttaataaatgcaatattttgttttttatgactttttttccTTTCGATATGAATTATTTTGTGTTTGGGatgtttgtttttactttgtttttaatgAAGAGATATACTTTATCATTTCTGTTGTGAGAGGAAGAGTTCTCATTTTTGGATTATAATGGGCTACACAGTTGACTGCAGTGAAGTAGAATTGATCAAAAGTTACTAAATATATTAGCAGTGTATGCTGAATGCTTGTTACCAGTGGAGTAGGtatttaaaacaatgtttgttCATTCAGTTGTCAACTGGCAGGCCACTTTGTTTAAACTACTCAATGCTTGTTAAACCAAATAAAGTATTGTTTGATTTACATATAGTTTTCATCAGCATTTTTTCCTCATACAGTGTTCATTTACTGAGCCACCTGCTTTGTGCTTATAGGAACTAGACACCAGGCAGGACCCACAACATCCTACTGGTTGCATTCATACTGCAATAGGAACTTTGAAATAATGTAAGACCGTCAATAGCAACACTATACAAATGTTCAATAATGTTTACAACTAGAGAAAACTGATCCAAGCTGCGTTTTGCAATAAGATTTAATCTTGCAGCATGCTTCCACTACAGCGTAAAATTTGCAGTCATTGCTGCTGGCAACGCAACTATTGGGgtgtgtaaaatgtttatttacaacgTGCCAGTGGAAACGCTGTAAGACATCAGATGCAGCCAACAACACAGTTGATTTTCATTGTCACTAGTTCTTTGGTGTCGACATGGTGTGTCCCAGGCTTTAGACCCTACTCTGAAATAGAAGCTGATTTAGTTACCCCAAAAGGTGTTtctacagttgacgtcagaattattagctcccctgtttattttttccctaatttctgtttaacgaagagaagattttttttcaacacatttctgaacataatagttttaataactcatttctaataactgatttattttatctttgccatggtgacagtaaattatttttcaagacacttctatacagcttaaagtaacatttaaaggcttaactagtttaactaggttaactaggcaggatagggtaattaggtatgTTGTTATACCATctgcgatggtttgttctgttgactatcaaaaacatatagcttaaaggggctaataactttgtccttaaaatgatttttaaaaattgaaaaaacgcttttattctagccgaaataaaacaa
>TCONS_00028095
TTGCCTTTAACTACGACATGCCTGAAGACTCTGACACGTACCTGCACAGGGTTGCACGGGCTGGCAGATTCGGAACAAAAGGTCTGGCCATCACCTTTGTGTCCGATGAAAATGATGCCCGCACTTTGAATGACGTTCAGGACAGGTTTGAGGTGAACATCAGTGAACTTCCAGAGGAGATTGACATCTCATCATACAGTGAGTGTTAACATTCAAACTTTAAAATGTACAGAACAAGATGAGAACATTTCTATATAGGAAATCAAATCGATAAATAATTCAGTTCTCCACATACGAACTACATAACAATGGACTAAAAACGAAAGCATTTCATTTGATTTTTGAAAAGTGTTTGGGTTACAGATGATCTGTATTATTGAGGTCTGCAGTACTTGGTCAGTATCTTGactagt

Function

symbol description
ddx39b Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway
ko03019 Messenger RNA biogenesis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-1259 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).

Ensembl:

ensembl_id ENSDARG00000036069

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028093 False 1928 mRNA 0.44 11 27339848 27357682
TCONS_00028094 False 2708 mRNA 0.41 10 27342479 27358545
TCONS_00028095 True 413 lncRNA 0.40 2 27354345 27354866

Neighbor

gene id symbol gene type direction distance location
XLOC_014097 NA coding upstream 298320 27033873 ~ 27041528 (+)
XLOC_014096 tnfa coding upstream 315829 27019432 ~ 27024019 (+)
XLOC_014095 nelfe coding upstream 407019 26922780 ~ 26932829 (+)
XLOC_014094 FP085398.1 coding upstream 495266 26828502 ~ 26844582 (+)
XLOC_014093 FP085398.3 coding upstream 533966 26805766 ~ 26805882 (+)
XLOC_014099 ppp1r11 coding downstream 90080 27448625 ~ 27453644 (+)
XLOC_014100 atat1 coding downstream 121018 27479563 ~ 27515651 (+)
XLOC_014101 C19H5orf49 coding downstream 230656 27589201 ~ 27608549 (+)
XLOC_014102 nsun2 coding downstream 500321 27858866 ~ 27902509 (+)
XLOC_014103 med10 coding downstream 611747 27970292 ~ 27974151 (+)
XLOC_014090 FP017254.1 non-coding upstream 763140 26576594 ~ 26576708 (+)
XLOC_014087 BX842609.1 non-coding upstream 1146912 26192822 ~ 26192936 (+)
XLOC_014081 CR855860.3 non-coding upstream 2164456 25175272 ~ 25175392 (+)
XLOC_014104 NA non-coding downstream 616120 27974665 ~ 27976483 (+)
XLOC_014106 BX511306.1 non-coding downstream 784590 28143135 ~ 28143254 (+)
XLOC_014109 NA non-coding downstream 1430423 28788968 ~ 28824390 (+)
XLOC_014110 NA non-coding downstream 1747390 29105935 ~ 29107694 (+)
XLOC_014111 CU469458.1 non-coding downstream 1844597 29203142 ~ 29203257 (+)

Expression


Co-expression Network