XLOC_014107 (mrpl36)


Basic Information

Item Value
gene id XLOC_014107
gene name mrpl36
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28284120 ~ 28290213 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028112
TTGCGTCACAGGAACTGGATGGGTTTTCTTGCGTCTGAAAAGCATGCTACCCTCGCACTGATGTATCTTGGATAAAAACGCTTAAATACACGCGTTTCTATCTGCATATTCAGACAGCCAGGTGTTGACATCATGTTGCTCCGCAGTCTTGTTGGTTCCCTGACTCGTCAGTGGTCCCAATTTGCCAGATGTGCAGCTTCCCTCTCCTTACCTGCAGTAGGAGCACAGAGATGCCTGTCCACCATCACAGCTGCAGCAGTGCCGTTTAGAGCAGTGGTCAACCCGATGTTCAAGCCACACACAGCATTCCTCTCACCGCTGCTTGGACGATGCCAGCAGCTTCTGTGTGTTCAACCATCTGCTGGCATGAAGACTAAAAGCGCTCTTAAAAAACGCTGTAACGAATGCTTTTTTGTCCGCCGCCGTGGAAGactgtttgttttttgcaagGCCCATCCCAGACACAAGCAGCGGCAGGGCTGAATTAACTCAGaccttaagtgtgtgtgtataattgttTAATTGCCATTGGCTGCTTCACAAATGAAGAATCACTTAAATGGTGTATTGAGCATATGGAGATCATAAAGTTTCTAATAAATATTGACAGGCTGAAAAGATGTTCTAATGATTTTGGAGTTATTCACATTTCATATATGTTCAATAGGAGAGCAGTTAAAGAGATGGAGTGTAACATTTGGCTTTTTAAATACAACTGCTTGATTTTTGCAACTGCTTGACATGTCTGTTTATAGATGTGACACTACATTGCAGTTTAGATCTAAAATAGAACCACTTTGGAcacttaaaattaaaacataaaattacacattttggAGGATGAAGGATTCATGATGTTACTCAAATAagtcaaacaaaaaagcaaaacaaactaacaaattacATGCTGCCTTTTCTAgccttatttacattaaaatattattgtaaaataatatatattcttaAACTGGAATTTCTGGATGGTTTTTGTGCattttgagtcttttttttttttttacttacatttgtTAAATTGCAGTTTGGTTTGCATTGATTTTAGTTTGCCGTCTTTCGGATAAAATGTTAAACTTAGGTcctaactctctgtggtcattaaaaatcccatgggaCTTCTCGTAAAGAGTCGGGATGTGGccgatgtcctggccaaatttccctCCATTGGCcacatggcctcccaatcatcctcatccacTGAATTGACTAACTTCTCCACTAATAGCTGGTATGTGGTGGGCGCACTGGCGCCGTTATCCTGTGGCAGTTGTCGCATCATCCAagaggatgctgcacactggtggtggagtggagagacccccccttaTGACTGTAAAGCGCTatgagtgtatggccatacatgataaatgcactgtgtaaatacatattgcattacattgatggttaaaatacaaatttatttattttttttatcaacatcTAAGAAGTCAGTTTCTGACTAATTGATTTCAAATCTATTTTTAAGCACACATTTGTAAATGTGTCAGGTTTAAGGAGCATTTGTGAATTAAATGGCAAAGAACTTaacgcaatttttttttaattgaatagaaATGCCAATGTTTTGAGGcccaaaaagcaaacaataaaaaaaaatctttcaaatcTTCTTGCAAATGAATTTATTATGTGTTATCGCAGTTACATGCTGCTAGTTAAATTTAACAAAGTTCCATTGCTCAGCATTATGGAGTACATCCCATTTTGTACAGGGAATATACGCAATGCATCTTgggtgcattttaacaaaacagggttattaacaaatttattaaaataatatttgtcacCAAACATATGAAAATTAAAAGAtagtacaattaaattcaagcaaaacactacgaaaaaaatacaacatacacctaactatttttttgattgtttgctACTCTTGAGTTTTCCttcttttaaattttttcaatAACAAATTTGGGTGTggtagtttttggactgttattgtaagctattttgtttatcagctccagatttggcttcagtactgactaatctaatgtatgtgcacaaatataatattgtatagcttcctgttaaaatatgaatttaaaagagatttgtgaggggtgtacttgagCACTTCATAAACAGGTGGTGTTTAGAATATAATTAAATCTGAACTGCATTTA

Function

symbol description
mrpl36 Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosome biogenesis. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL36 (mitochondrial ribosomal protein L36).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-060503-821 Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosome biogenesis. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL36 (mitochondrial ribosomal protein L36).

Ensembl:

ensembl_id ENSDARG00000070607

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028112 True 2183 mRNA 0.37 2 28284120 28290213

Neighbor

gene id symbol gene type direction distance location
XLOC_014105 irx4b coding upstream 21223 28114503 ~ 28262897 (+)
XLOC_014106 BX511306.1 coding upstream 140866 28143135 ~ 28143254 (+)
XLOC_014104 NA coding upstream 307637 27974665 ~ 27976483 (+)
XLOC_014103 med10 coding upstream 309969 27970292 ~ 27974151 (+)
XLOC_014102 nsun2 coding upstream 381611 27858866 ~ 27902509 (+)
XLOC_014108 lpcat1 coding downstream 849 28291062 ~ 28334164 (+)
XLOC_014109 NA coding downstream 498755 28788968 ~ 28824390 (+)
XLOC_014110 NA coding downstream 815722 29105935 ~ 29107694 (+)
XLOC_014111 CU469458.1 coding downstream 912929 29203142 ~ 29203257 (+)
XLOC_014112 maco1a coding downstream 1013634 29303847 ~ 29333867 (+)
XLOC_014097 NA non-coding upstream 1242592 27033873 ~ 27041528 (+)
XLOC_014093 FP085398.3 non-coding upstream 1478238 26805766 ~ 26805882 (+)
XLOC_014090 FP017254.1 non-coding upstream 1707412 26576594 ~ 26576708 (+)
XLOC_014114 NA non-coding downstream 1168904 29459117 ~ 29607003 (+)
XLOC_014115 NA non-coding downstream 1455925 29746138 ~ 29751743 (+)

Expression


Co-expression Network