XLOC_014108 (lpcat1)


Basic Information

Item Value
gene id XLOC_014108
gene name lpcat1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28291062 ~ 28334164 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028113
TCACGATTCTCGACACTCCTCAGCTGTGACCGTCTGTGGAAAGTTGTTATGCTTACAAGCTCCCAGCGGTTTAAGCACGTGCACTGTAAATGATTCTCCAGGCAATTGAGCGGGGATTGTTTTGAAAAACACTGACAGTTGTTTTTCATAAACCGTCAGTCAACAAccgtataaatatatacaaaaacagACGCGAGAAGACCAAATAAACTACAGATTTACGACTAAACGTCAGTATCAACAGAATGCTTTTGGGAAGACATCTCCGACTGTGATGTCAGGACTTGCGTTTATCACGCATGCGCAAAACGAAAACGCGCATGATGCTGTGAATGAACAGGAGAAGCCGAGCACCGGTGGCTTAAAAATCGACTAGAAGCGCGTgtacatattacTGCTCCAGCATGAGGTTCCCAAACAGAAAACTACACACGGCGGTGAACGGAGGAGACTCGGGCGTTTCTACTCACTTTAGAAACCCTTTCGTGCACGAGTTGCGGTTTACTACTCTTCAGAAACTCAAGATAGCTGTGATGACTGTGACGCTTTTCCCTGTTCGTCTGCTCTTTGCTGCATTCATGATGTTGTTGGCCTGGCCCTTTGCATTCGTGGCTACTGTTGGCCGTTCTGAAAATGCAGTTGAGCCCCTGTCCTGGTGGAGGTGGCTGGTGGATCTGGCCCTGAAGGCCATCATGAGGGCCATGTGGTTTTCCGGAGGGTTTCATTGGGTCCGTGTGAAGGGTCGGCCGGCTCTGCCCAGTGAAGCACCTATCCTCACGATGGCACCTCACTCTTCCTACTTTGATGCCATCCCTGTCACCATGACCATGGCCTCTATAGTGATGAAGGCAGAGAGTAAAGACATTCCAGTCTGGGGAACTCTTATCAAATTCATTCGGCCAGTGTTTGTGTCCCGCTCGGATCAGGACTCCCGGAGGAAGACCGTCGAGGAGATCAAACGTAGAGCGTCATCTAATGGCGAATGGCCTCAGATCATGATATTCCCGGAGGGCACATGCACCAATAGATCCTGTCTCATCGCATTTAAGCCTGGTGCATTCATCCCTGGCGTTCCTGTCCAGCCTGTCGTGTTGCGGTATCCTAATGAGTTGGATACAATCTCATGGACGTGGCAAGGGCCTGGAGCGTTTAAGATTTTGTGGCTTACATTGTGTCAGCTACATAACTTCGTTGAGATAGAGTATCTTCCTACATACACTCCGTCAGAAGAGGAGAAGAAAGATCCAGCCCTGTTTGCCAGCAATGTGAGACGCATCATGGCCAAGGCACTTGGGTTGCCCATTATCGATTACTCTTTTGAGGACTGCCAGCTTGCCATGGCCAAAGGCCCTTTGCGTTTGCCCAAACACACCTGCTTGCTAGAATTCGCCAGACTGGTGCGACTTTTGGGcCTGAAGACAAAAGTCACAGATGAAGTCTTGCAAGAAGAAGCTTGCAGTGCCCGTCAGCTGTGTGGAAGACGACTGGACATGGAGGGCTTTGCTCAGTATCTCCACCAACCCATGACAGAAGCAGTCCAGGATATCTTCTCACTATTTGAAGAGCATGGGATGATGGATGTGAGAGAATACGTCATCGCTCTGTCAGTGGTTTGTAGACCTTTCAGATATCTGGACACCGTTAAACTGGCCTTCAGGaTGTTTGAAGCACAGGAGGACGGAGCTATTGTTGAAGACGAACTGACCGTCATTCTAAAAACTGCTCTGGGAGTTGGAGATCTTGCTGTTTCTGAACTCTTCAGGGCCATAGATAGCCAAGACAAGGGAAAGATCACATTTGATGAATTGTGCAGCTTCATGGAGAAATGCCCTGATTTGGTGGAGCAGTATCACTGTCTCTGTGAGTCAATCTCTCAGCACTCCAGAGAATCCACATCTTCAAGTAACGGCTTCTGTGCTGACTTCAGCCCCCGAAATCACAGCAAGAAACAGGACTAAACATGGCTTTACCATCACAGCCTGTCACCCTCAGTGTGTGACGCTGTTTTCCTGTGTGCACCAAGAGAG
>TCONS_00028114
ACGCGCATGATGCTGTGAATGAACAGGAGAAGCCGAGCACCGGTGGCTTAAAAATCGACTAGAAGCGCGTgtacatattacTGCTCCAGCATGAGGTTCCCAAACAGAAAACTACACACGGCGGTGAACGGAGGAGACTCGGGCGTTTCTACTCACTTTAGAAACCCTTTCGTGCACGAGTTGCGGTTTACTACTCTTCAGAAACTCAAGAGAACATTGAGTGGAGGCAGGTCATGATTGACAGTGCTGCCCACAGGCTAATATGGTCCAACACTAGATCTGAAACAAGATAGCTGTGATGACTGTGACGCTTTTCCCTGTTCGTCTGCTCTTTGCTGCATTCATGATGTTGTTGGCCTGGCCCTTTGCATTCGTGGCTACTGTTGGCCGTTCTGAAAATGCAGTTGAGCCCCTGTCCTGGTGGAGGTGGCTGGTGGATCTGGCCCTGAAGGCCATCATGAGGGCCATGTGGTTTTCCGGAGGGTTTCATTGGGTCCGTGTGAAGGGTCGGCCGGCTCTGCCCAGTGAAGCACCTATCCTCACGATGGCACCTCACTCTTCCTACTTTGATGCCATCCCTGTCACCATGACCATGGCCTCTATAGTGATGAAGGCAGAGAGTAAAGACATTCCAGTCTGGGGAACTCTTATCAAATTCATTCGGCCAGTGTTTGTGTCCCGCTCGGATCAGGACTCCCGGAGGAAGACCGTCGAGGAGATCAAACGTAGAGCGTCATCTAATGGCGAATGGCCTCAGATCATGATATTCCCGGAGGGCACATGCACCAATAGATCCTGTCTCATCGCATTTAAGCCTGGT
>TCONS_00028115
ACGCGCATGATGCTGTGAATGAACAGGAGAAGCCGAGCACCGGTGGCTTAAAAATCGACTAGAAGCGCGTgtacatattacTGCTCCAGCATGAGGTTCCCAAACAGAAAACTACACACGGCGGTGAACGGAGGAGACTCGGGCGTTTCTACTCACTTTAGAAACCCTTTCGTGCACGAGTTGCGGTTTACTACTCTTCAGAAACTCAAGATAGCTGTGATGACTGTGACGCTTTTCCCTGTTCGTCTGCTCTTTGCTGCATTCATGATGTTGTTGGCCTGGCCCTTTGCATTCGTGGCTACTGTTGGCCGTTCTGAAAATGCAGTTGAGCCCCTGTCCTGGTGGAGGTGGCTGGTGGATCTGGCCCTGAAGGCCATCATGAGGGCCATGTGGTTTTCCGGAGGGTTTCATTGGGTCCGTGTGAAGGGTCGGCCGGCTCTGCCCAGTGAAGCACCTATCCTCACGATGGCACCTCACTCTTCCTACTTTGATGCCATCCCTGTCACCATGACCATGGCCTCTATAGTGATGAAGGCAGAGAGTAAAGACATTCCAGTCTGGGGAACTCTTATCAAATTCATTCGGCCAGTGTTTGTGTCCCGCTCGGATCAGGACTCCCGGAGGAAGACCGTCGAGGAGATCAAACGTAGAGCGTCATCTAATGGCGAATGGCCTCAGATCATGATATTCCCGGAGGGCACATGCACCAATAGATCCTGTCTCATCGCATTTAAGCCTGGTGCATTCATCCCTGGCGTTCCTGTCCAGCCTGTCGTGTTGCGGTATCCTAATGAGTTG
>TCONS_00028116
GCGCGTGTAAGACCAGGAAGTTGTGTAGTATATAAACGGAACACTTTGTGGAAGCATTTTCTCGTggactttatatatttttctttttaaaggtacatattacTGCTCCAGCATGAGGTTCCCAAACAGAAAACTACACACGGCGGTGAACGGAGGAGACTCGGGCGTTTCTACTCACTTTAGAAACCCTTTCGTGCACGAGTTGCGGTTTACTACTCTTCAGAAACTCAAGATAGCTGTGATGACTGTGACGCTTTTCCCTGTTCGTCTGCTCTTTGCTGCATTCATGATGTTGTTGGCCTGGCCCTTTGCATTCGTGGCTACTGTTGGCCGTTCTGAAAATGCAGTTGAGCCCCTGTCCTGGTGGAGGTGGCTGGTGGATCTGGCCCTGAAGGCCATCATGAGGGCCATGTGGTTTTCCGGAGGGTTTCATTGGGTCCGTGTGAAGGGTCGGCCGGCTCTGCCCAGTGAAGCACCTATCCTCACGATGGCACCTCACTCTTCCTACTTTGATGCCATCCCTGTCACCATGACCATGGCCTCTATAGTGATGAAGGCAGAGAGTAAAGACATTCCAGTCTGGGGAACTCTTATCAAATTCATTCGGCCAGTGTTTGTGTCCCGCTCGGATCAGGACTCCCGGAGGAAGACCGTCGAGGAGATCAAACGTAGAGCGTCATCTAATGGCGAATGGCCTCAGATCATGATATTCCCGGAGGGCACATGCACCAATAGATCCTGTCTCATCGCATTTAAGCCTGGTGCATTCATCCCTGGCGTTCCTGTCCAGCCTGTCGTGTTGCGGTATCCTAATGAGTTGGATACAATCTCATGGACGTGGCAAGGGCCTGGAGCGTTTAAGATTTTGTGGCTTACATTGTGTCAGCTACATAACTTCGTTGAGATAGAGTATCTTCCTACATACACTCCGTCAGAAGAGGAGAAGAAAGATCCAGCCCTGTTTGCCAGCAATGTGAGACGCATCATGGCCAAGGCACTTGGGTTGCCCATTATCGATTACTCTTTTGAGGACTGCCAGCTTGCCATGGCCAAAGGCCCTTTGCGTTTGCCCAAACACACCTGCTTGCTAGAATTCGCCAGACTGGTGCGACTTTTGGGcCTGAAGACAAAAGTCACAGATGAAGTCTTGCAAGAAGAAGCTTGCAGTGCCCGTCAGCTGTGTGGAAGACGACTGGACATGGAGGGCTTTGCTCAGTATCTCCACCAACCCATGACAGAAGCAGTCCAGGATATCTTCTCACTATTTGAAGAGCATGGGATGATGGATGTGAGAGAATACGTCATCGCTCTGTCAGTGGTTTGTAGACCTTTCAGATATCTGGACACCGTTAAACTGGCCTTCAGGaTGTTTGAAGCACAGGAGGACGGAGCTATTGTTGAAGACGAACTGACCGTCATTCTAAAAACTGCTCTGGGAGTTGGAGATCTTGCTGTTTCTGAACTCTTCAGGGCCATAGATAGCCAAGACAAGGGAAAGATCACATTTGATGAATTGTGCAGCTTCATGGAGAAATGCCCTGATTTGGTGGAGCAGTATCACTGTCTCTGTGAGTCAATCTCTCAGCACTCCAGAGAATCCACATCTTCAAGTAACGGCTTCTGTGCTGACTTCAGCCCCCGAAATCACAGCAAGAAACAGGACTAAACATGGCTTTACCATCACAGCCTGTCACCCTCAGTGTGTGACGCTGTTTTCCTGTGTGCACCAAGAGAGGTGATGACAGACCACATCTCAAGTTGAATCTGAATTTGCATCTGGGTACATTACCCTAGGGATTTTCCCAGAGTTTTTGTTCAAAATccttcaataatttattttttatgcccTCAAGGAACTTATCTTCAAGGCGCTTCGTTTTTCTGACAGATCTTAAGAATGGAAACGAAACTGACTTTATTTTAATGCCTTATGTTCTTTTTTTGACAGAGagattttcacagtttttctaTATAAAGCGTTGCTTGCTTTAAAAGATTGCAATTTTTAATATgcgcaaaataaataaataaaaaaaccacgccaacaaca
>TCONS_00028117
AAACTAATTTCGGCCCCTTGAATCTAAGAtcttgacccaaagctcatgaccacagGATACAATCTCATGGACGTGGCAAGGGCCTGGAGCGTTTAAGATTTTGTGGCTTACATTGTGTCAGCTACATAACTTCGTTGAGATAGAGTATCTTCCTACATACACTCCGTCAGAAGAGGAGAAGAAAGATCCAGCCCTGTTTGCCAGCAATGTGAGACGCATCATGGCCAAGGCACTTGGGTTGCCCATTATCGATTACTCTTTTGAGGACTGCCAGCTTGCCATGGCCAAAGGCCCTTTGCGTTTGCCCAAACACACCTGCTTGCTAGAATTCGCCAGACTGGTGCGACTTTTGGGcCTGAAGACAAAAGTCACAGATGAAGTCTTGCAAGAAGAAGCTTGCAGTGCCCGTCAGCTGTGTGGAAGACGACTGGACATGGAGGGCTTTGCTCAGTATCTCCACCAACCCATGACAGAAGCAGTCCAGGATATCTTCTCACTATTTGAA
>TCONS_00028118
CATGGGATGATGGATGTGAGAGAATACGTCATCGCTCTGTCAGTGGTTTGTAGACCTTTCAGATATCTGGACACCGTTAAACTGGCCTTCAGGaTGTTTGAAGCACAGGAGGACGGAGCTATTGTTGAAGACGAACTGACCGTCATTCTAAAAACTGCTCTGGGAGTTGGAGATCTTGCTGTTTCTGAACTCTTCAGGGCCATAGATAGCCAAGACAAGGGAAAGATCACATTTGATGAATTGTGCAGCTTCATGGAGAAATGCCCTGATTTGGTGGAGCAGTATCACTGTCTCTGTGAGTCAATCTCTCAGCACTCCAGAGAATCCACATCTTCAAGTAACGGCTTCTGTGCTGACTTCAGCCCCCGAAATCACAGCAAGAAACAGGACTAAACATGGCTTTACCATCACAGCCTGTCACCCTCAGTGTGTGACGCTGTTTTCCTGTGTGCACCAAGAGAGGAACTTATCTTCAAGGCGCTTCGTTTTTCTGACAGATCTTAAGAATGGAAACGAAACTGACTTTATTTTAATGCCTTATGTTCTTTTTTTGACAGAGagattttcacagtttttctaTATAAAGCGTTGCTTGCTTTAAAAGATTGCAATTTTTAATATgcgcaaaataaataaataaaaaaaccacgccaacaacatacaaaaaa

Function

symbol description
lpcat1 Predicted to enable O-acyltransferase activity. Predicted to be involved in phospholipid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Orthologous to human LPCAT1 (lysophosphatidylcholine acyltransferase 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005811 lipid droplet cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0047159 1-alkenylglycerophosphocholine O-acyltransferase activity molecular_function
GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity molecular_function
GO:0047192 1-alkylglycerophosphocholine O-acetyltransferase activity molecular_function
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-915 Predicted to enable O-acyltransferase activity. Predicted to be involved in phospholipid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Orthologous to human LPCAT1 (lysophosphatidylcholine acyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000011506

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028113 False 2027 mRNA 0.49 15 28291062 28333840
TCONS_00028114 False 820 nonsense_mediated_decay 0.52 7 28291376 28315953
TCONS_00028115 False 798 mRNA 0.52 7 28291376 28320139
TCONS_00028116 False 2050 mRNA 0.47 14 28291440 28334155
TCONS_00028117 False 505 processed_transcript 0.48 6 28321679 28331097
TCONS_00028118 True 668 nonsense_mediated_decay 0.42 4 28331227 28334164

Neighbor

gene id symbol gene type direction distance location
XLOC_014107 mrpl36 coding upstream 849 28284120 ~ 28290213 (+)
XLOC_014105 irx4b coding upstream 28165 28114503 ~ 28262897 (+)
XLOC_014106 BX511306.1 coding upstream 147808 28143135 ~ 28143254 (+)
XLOC_014104 NA coding upstream 314579 27974665 ~ 27976483 (+)
XLOC_014103 med10 coding upstream 316911 27970292 ~ 27974151 (+)
XLOC_014109 NA coding downstream 454804 28788968 ~ 28824390 (+)
XLOC_014110 NA coding downstream 771771 29105935 ~ 29107694 (+)
XLOC_014111 CU469458.1 coding downstream 868978 29203142 ~ 29203257 (+)
XLOC_014112 maco1a coding downstream 969683 29303847 ~ 29333867 (+)
XLOC_014113 ldlrap1a coding downstream 1003625 29337789 ~ 29363779 (+)
XLOC_014097 NA non-coding upstream 1249534 27033873 ~ 27041528 (+)
XLOC_014093 FP085398.3 non-coding upstream 1485180 26805766 ~ 26805882 (+)
XLOC_014090 FP017254.1 non-coding upstream 1714354 26576594 ~ 26576708 (+)
XLOC_014114 NA non-coding downstream 1124953 29459117 ~ 29607003 (+)
XLOC_014115 NA non-coding downstream 1411974 29746138 ~ 29751743 (+)

Expression


Co-expression Network