XLOC_014115


Basic Information

Item Value
gene id XLOC_014115
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29746138 ~ 29751743 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029952
GACTTGTCTACATTTGATTGCTCCCAGGGGCAGTAATTATGGGCGTCAGGGGGTTCCTGATAGGAAAGTGTTGCTGCCGTCCTCGTCCTGCAGTGGTATCAGTGGCGGTCTGTGACAGAGGGGTAAGTGGTGTCTTCACTTTCAGGACTTGACCCTGTGCTGAGTAGCACTTTGATGGGAACCAATTACCCCCAGACAGCACCTGTCAACACACGGAGAGAGCGGACACAGATGAGGCAGATATTCACCTTTACACCCCACACACAACGGGAGCTGGCCTCCTGCTGCCTCGTGCTCTTTACTTTCAAGGGTCACACAGTGCACATCAAAAGAACAACATCTACTTCATTTAACTAATGTAGGAGCCCAAAGAAGCCCTTTACATGATGGATGACAGGAAGCTATTTCACCTTTTCTTTCTCTCATTCTACCTATTTCTCTGTCTATTTAACTGTACATATGCCTAAATATCTGTTCTAATATCTGACAGTGGTGGATTTTCTTTAGGTATTTTTGCTTCACTACTGTGAATATCTTTACTTTACaggagtatttttattttaaggaatCTTTTACTTCACTTCATTCCAAAACAAAATACAGTGGTCTCTTGTTATTCacggagttacgttctaaaaataacctttattttagctttattttctataattattatagatgttttaagactCTAAAACCCCTCAATACACagtttatacacttttctcagacaggcattaacattttcacacttttctctcttcttTAAACTCTCAAAGTCCAAACCTTCGTATAAAAAATgtgtccagtattatagaataaaagcaaagatcaaaaccatttgatcttcatttactgtatttattccaTAATGGCGCCCTACAGCCGTGTAACTTCTACCtttctttagcatgtccagaagtccaactGTTTGGtgtgatggttagcatcttcctctgcctgtTGGGTGCTACCGCAGGTGCCTCTGACGGTGCAGAATGTTTTGTCGACATTGTTGGtcaaaaacttgcaaacatacagtacagcactttagagtcacactgctagcaatcaaaga
>TCONS_00029953
CACTAGTTCATCTTGAATTGTACATACCCACTGTACGTATACATTTGTTattatgtttttgtatttatttaattttaacaacaaGTTATATTTGAAGTTAtacatatgcatttttttttcatatctatCGGCATACCTAGTATTACATagtattaatagcaacctgtacatatattcatctattgtaaatctctgtatATACCTCTCTGTATATATCTCTATGTACAACCTGTTTATAacgttcatagtacatccatctttAAATATCACTATAatttttctataattgcactttataacgtatacctgtatcctgcacttgccttgtacttgtacatgggAAGAAAATTCACAAATAGAACCTATTCATTACATAGTAACTCCTTGGCAACCATAAACaatcagaaatgtgttaaagaagaAACCATATAAAAATGTCTGGTCAAATCTAATACCCAACATGATGTGACTCAAAGTTTTTTCACATGGCTACACTTTTATATTTAATCAAACGTGTAAGAATTGACACAAAGTGGATGTACAGGTGATGTCAATGATACCCACAATATGTCAGTCTGTCTGCTGTTAATACTACTTAATTCGATAACCAAAGGAATCTCCGTTTGTCCTTTCAGAAAGTGTTGCTGCCGTCCTCGTCCTGCAGTGGTATCAGTGGCGGTCTGTGACAGAGGGACAGCACCTGTCAACACACGGAGAGAGCGGACACAGATGAGGCAGATATTCACCTTTACACCCCACACACAACGGGAGCTGGCCTCCTGCTGCCTCGTGCTCTTTACTTTCAAGGGTCACACAGTGCACATCAAAAGAACAACATCTACTTCATTTAACTAATGTAGGAGCCCAAAGAAGCCCTTTACATGATGGATGACAGGAAGCTATTTCACCTTTTCTTTCTCTCATTCTACCTATTTCTCTGTCTATTTAACTGTACATATGCCTAAATATCTGTTCTAATATCTGACAGTGGTGGATTTTCTTTAGGTATTTTTGCTTCACTACTGTGAATATCTTTACTTTACaggagtatttttattttaaggaatCTTTTACTTCACTTCATTCCAAAACAAAATACAGTGGTCTCTTGTTATTCacggagttacgttctaaaaataacctttattttagctttattttctataattattatagatgttttaagactCTAAAACCCCTCAATACACagtttatacacttttctcagacaggcattaacattttcacacttttctctcttcttTAAACTCTCAAAGTCCAAACCTTCGTATAAAAAATgtgtccagtattatagaataaaagcaaagatcaaaaccatttgatcttcatttactgtatttattccaTAATGGCGCCCTACAGCCGTGTAACTTCTACCtttctttagcatgtccagaagtccaactGTTTGGtgtgatggttagcatcttcctctgcctgtTGGGTGCTACCGCAGGTGCCTCTGACGGTGCAGAATGTTTTGTCGACATTGTTGGtcaaaaacttgcaaacatacagtacagcactttagagtcacactgctagcaatcaaaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029952 False 1078 lncRNA 0.41 2 29746138 29751743
TCONS_00029953 True 1576 lncRNA 0.36 2 29750095 29751743

Neighbor

gene id symbol gene type direction distance location
XLOC_014114 NA coding upstream 139135 29459117 ~ 29607003 (+)
XLOC_014113 ldlrap1a coding upstream 382359 29337789 ~ 29363779 (+)
XLOC_014112 maco1a coding upstream 412271 29303847 ~ 29333867 (+)
XLOC_014111 CU469458.1 coding upstream 542881 29203142 ~ 29203257 (+)
XLOC_014110 NA coding upstream 638444 29105935 ~ 29107694 (+)
XLOC_014116 marcksl1b coding downstream 46321 29798064 ~ 29800812 (+)
XLOC_014117 hdac1 coding downstream 56728 29808471 ~ 29821601 (+)
XLOC_014118 si:ch73-130a3.4 coding downstream 102480 29854223 ~ 29860334 (+)
XLOC_014119 tspan13b coding downstream 636256 30387999 ~ 30399876 (+)
XLOC_014120 mrps18b coding downstream 671374 30423117 ~ 30428901 (+)
XLOC_014109 NA non-coding upstream 921748 28788968 ~ 28824390 (+)
XLOC_014106 BX511306.1 non-coding upstream 1602884 28143135 ~ 28143254 (+)
XLOC_014123 BX510301.1 non-coding downstream 766712 30518455 ~ 30518573 (+)
XLOC_014124 BX510301.3 non-coding downstream 836123 30587866 ~ 30589951 (+)
XLOC_014125 CU463182.1 non-coding downstream 879200 30630943 ~ 30631060 (+)
XLOC_014127 NA non-coding downstream 973253 30724996 ~ 30725703 (+)
XLOC_014128 NA non-coding downstream 1048309 30800052 ~ 30801988 (+)

Expression


Co-expression Network