XLOC_014118 (si:ch73-130a3.4)


Basic Information

Item Value
gene id XLOC_014118
gene name si:ch73-130a3.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29854223 ~ 29860334 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028133
TCGCAGCAGGTCAGCGTCGGCGCCATGTTGGACCGGGCAACTGCAACAGAACCTTGAGCTGGCGAAAGAAAATGCCAGATTCGTGTGCTGCTTGGGGATGTAAAAACCGCCGCGCAGTCCAAACCAAATCGCGAGGAATTACCTTTCACAAGTTTCCTAAAGAGAACGTGTTGAGAAAGCAGTGGGAAATCGCCTTAAAAAGGAAAGGTTTTTCAGCCAGTGAGTCCTCAGTGCTGTGCAGTGAACACTTCAGGCCACAGGACCTGGACAGGACAGGTCAGACTGTCAGGGTcagagatggagctaaaccctcaGTCTTCAGTTTTCCAGCTCATATGCAAAAACACGTGACAGCCAGGAAAACTCAAACCTCAATAAAGGCTGAAGAGCTTTATGCAGTGAACAAAGAGACTACGCAGAAACAAGAGACTAAACCTCTGCCAAATGTGGATCACTCATATGCATTACCTGCAGATCTGCCAGGACTAAAGACCAAACTCGTGGAAGCCTTGGCTAGAGTGGAGATTCTGGAGAGACACATGAGGAACATGAAGAAACGAGAACAGAGAGTAAAGAACATGGTGCTGGCTGTGCTGAAGGATCTGGGGGGAAAGAACCTCATGAACAAAGAACTGAAACGCAAGCTCAGAATCTACTTGAGGAAAATGAAAGGTTGAATTTTGGGTATCTTCTGTTTACACTATCCTTTTGTTGGAATTCTTACAGGGAATGAGTTTGAAGTTCTGAACTTAAATGAAAGATCAGATACTATGCAGGATTTCTATTCTAGTATTTGACAGCTCAAGTTCATTGTACACTTCTGTAGATTGGAGTCCTGCATTTGATATTTATATGATGTGATTTTTGAAGGAAAAGACTCATCAACTCAA
>TCONS_00028134
GTTGGACCGGGCAACTGCAACAGAACCTTGAGCTGGCGAAAGAAAATGCCAGATTCGTGTGCTGCTTGGGGATGTAAAAACCGCCGCGCAGTCCAAACCAAATCGCGAGGAATTACCTTTCACAAACCCCAGAGACTCACCAAGACCCCAGACTGGAGCGCCACCAAACGGAGATGTGTTTTTGATTCAGGTTTCCTAAAGAGAACGTGTTGAGAAAGCAGTGGGAAATCGCCTTAAAAAGGAAAGGTTTTTCAGCCAGTGAGTCCTCAGTGCTGTGCAGTGAACACTTCAGGCCACAGGACCTGGACAGGACAGGTCAGACTGTCAGGGTcagagatggagctaaaccctcaGTCTTCAGTTTTCCAGCTCATATGCAAAAACACGTGACAGCCAGGAAAACTCAAACCTCAATAAAGGCTGAAGAGCTTTATGCAGTGAACAAAGAGACTACGCAGAAACAAGAGACTAAACCTCTGCCAAATGTGGATCACTCATATGCATTACCTGCAGATCTGCCAGGACTAAAGACCAAACTCGTGGAAGCCTTGGCTAGAGTGGAGATTCTGGAGAGACACATGAGGAACATGAAGAAACGAGAACAGAGAGTAAAGAACATGGTGCTGGCTGTGCTGAAGGATCTGGGGGGAAAGAACCTCATGAACAAAGAACTGAAACGCAAGCTCAGAATCTACTTGAGGAAAATGAAAGGTTGAATTTTGGGTATCTTCTGTTTACACTATCCTTTTGTTGGAATTCTTACAGGGAATGAGTTTGAAGTTCTGAACTTAAATGAAAGATCAGATACTATGCAGGATTTCTATTCTAGTATTTGACAGCTCAAGTTCATTGTACACTTCTGTAGATTGGAGTCCTGCATTTGATATTTATATGATGTGATTTTTGAAGGAAAAGAC
>TCONS_00028135
TGGCGAAAGAAAATGCCAGATTCGTGTGCTGCTTGGGGATGTAAAAACCGCCGCGCAGTCCAAACCAAATCGCGAGGAATTACCTTTCACAAGTTTCCTAAAGAGAACGTGTTGAGAAAGCAGTGGGAAATCGCCTTAAAAAGGAAAGGTTTTTCAGCCAGTGAGTCCTCAGTGCTGTGCAGTGAACACTTCAGGCCACAGGACCTGGACAGGACAGGTCAGACTGTCAGGGTcagagatggagctaaaccctcaGTCTTCAGTTTTCCAGCTCATATGCAAAAACACGTGACAGCCAGGAAAACTCAAACCTCAATAAAGGCTGAAGAGCTTTATGCAGTGAACAAAGAGACTACGCAGAAACAAGAGACTAAACCTCTGCCAAATGTGGTGAGAATTTAGTGGCGCAATTacaatttattgattatttcCTTTAATAGAGATACAAGACATCTGCCAGCATTCGTTCCCCTAACTTAAAAGGGTGTCATCACTAAATCACCCTCATGTACTTGAAGTAATAAGATATTAATCTTCAAAACatgtt
>TCONS_00028136
ttcctggagatcaaacttcctgcagagttcagctgcaaaTAAACCACAACTAAGGATCACTCATATGCATTACCTGCAGATCTGCCAGGACTAAAGACCAAACTCGTGGAAGCCTTGGCTAGAGTGGAGATTCTGGAGAGACACATGAGGAACATGAAGAAACGAGAACAGAGAGTAAAGAACATGGTGCTGGCTGTGCTGAAGGATCTGGGGGGAAAGAACCTCATGAACAAAGAACTGAAACGCAAGCTCAGAATCTACTTGAGGAAAATGAAAGGTTGAATTTTGGGTATCTTCTGTTTACACTATCCTTTTGTTGGAATTCTTACAGGGAATGAGTTTGAAGTTCTGAACTTAAATGAAAGATCAGATACTATGCAGGATTTCTATTCTAGTATTTGACAGCTCAAGTTCATTGTACACTTCTGTAGATTGGAGTCCTGCATTTGATATTTATATGATGTGATTTTTGAAGGAAAAGACTCATCAACTCAAAATGTATGcagattgatttgtttgtttgtgaaatgAAGCTAttcctgtatttttataattattgtgtGTAAAGAGAAATAACTTATGAGCAAATATTTagataataaatcattcaa

Function

symbol description
si:ch73-130a3.4 Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to several human genes including THAP6 (THAP domain containing 6).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141219-41 Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to several human genes including THAP6 (THAP domain containing 6).

Ensembl:

ensembl_id ENSDARG00000056213

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028133 False 890 mRNA 0.44 4 29854223 29860218
TCONS_00028134 False 917 nonsense_mediated_decay 0.44 5 29854249 29860206
TCONS_00028135 False 547 mRNA 0.43 3 29854282 29857036
TCONS_00028136 True 611 processed_transcript 0.37 2 29859036 29860334

Neighbor

gene id symbol gene type direction distance location
XLOC_014117 hdac1 coding upstream 32622 29808471 ~ 29821601 (+)
XLOC_014116 marcksl1b coding upstream 53411 29798064 ~ 29800812 (+)
XLOC_014115 NA coding upstream 102480 29746138 ~ 29751743 (+)
XLOC_014114 NA coding upstream 247220 29459117 ~ 29607003 (+)
XLOC_014113 ldlrap1a coding upstream 490444 29337789 ~ 29363779 (+)
XLOC_014119 tspan13b coding downstream 527665 30387999 ~ 30399876 (+)
XLOC_014120 mrps18b coding downstream 562783 30423117 ~ 30428901 (+)
XLOC_014121 si:ch211-215a10.4 coding downstream 589791 30450125 ~ 30468234 (+)
XLOC_014122 BX510301.2 coding downstream 634775 30495109 ~ 30516680 (+)
XLOC_014123 BX510301.1 coding downstream 658121 30518455 ~ 30518573 (+)
XLOC_014111 CU469458.1 non-coding upstream 650966 29203142 ~ 29203257 (+)
XLOC_014110 NA non-coding upstream 746529 29105935 ~ 29107694 (+)
XLOC_014109 NA non-coding upstream 1029833 28788968 ~ 28824390 (+)
XLOC_014124 BX510301.3 non-coding downstream 727532 30587866 ~ 30589951 (+)
XLOC_014125 CU463182.1 non-coding downstream 770609 30630943 ~ 30631060 (+)
XLOC_014127 NA non-coding downstream 864662 30724996 ~ 30725703 (+)
XLOC_014128 NA non-coding downstream 939718 30800052 ~ 30801988 (+)

Expression


Co-expression Network