XLOC_014119 (tspan13b)


Basic Information

Item Value
gene id XLOC_014119
gene name tspan13b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30387999 ~ 30399876 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028137
CTCTCATGCATCAGTGTTCGCCGTGAATTGGTCTGAGGCACACTCCTCTTTATTTCTCGTATTTTCTCGATTCCCAACAACGATTTCCTCTCCAAAATTGTTCGATTTGCGTGTCATGTAACTGATATTTCCAGAGACGGTAATTGTCACAGTTTTAAAGCTTCTGTTCGGCAAAACAATAATCAAGATGGGCTGCGCTGGATTCACCTGCTCCAAGAATTCCCTGTGTGCGCTCAACATCCTTTATGTTATGGTGAGTTTGCTGATGATCGGCATCGCCGCATGGGGGAAGTGTTTCGGGCTGGTGTCCAGTTTCCAGGTGGTTGGTGGCATCATAGGAATTGGGGTTTTCCTCTTCTTTGTTGCTCTTGCTGGACTCATTGGTGCCATGAAGCACCATCAGGTCCTGCTGTTCTTTTACATGATCATCTTGTTCCTGGTGTTTGTAGTTCAGTTTGCAGTGTCCAGTGCATGTCTGGCTATTAATGAGAAGCAACAGAATCACCTGTTGGAGGTGGGTTGGAACAACTCTTTGACCACTCAGAGGGACGTTGAGAAGAGTCTGAACTGCTGCGGTTTCTCCCACATGGATGTCAATGGAAGCTGCGCTGCTCCTTGTTTTCATTACAGCACTTGCACCACATGTGCAGCAAAGATCCAGGAGCATGCAGGAGAGGTACTGCGCTTCGTCGGGGGAATCGGCCTCTTCTTCAGCTTCACTGAGttattattctgcttgtttCAGATCCTGGGTGTTTGGCTGACATACCGATACAGGAACCAGAAGGACCCACGGGCGAATCCCAGCGCTTTTCTATAGGTCAGATTCTCCTCATTTTGTCATTTGACCACTGAAATATTCACTGGAGCTGTTACAGAAAGTGTGCGTTTGCTTTTACCCAAAAGAAGAGGAGACCAGCCTGCGTGTTCTTGCTGCTATATATTATTATGTGCTTGATTTTTTCAAGATTACAGTGTGACCGCACTGTACTGTGCGTTATATGAGGCTGTATGTTATGTAATGAAAGAACACAACACCAAATATTAGTATGCAGTACTTGCAGTAATGGGCTAAACAATCAACACCATTTGGTTTAATGTTAACCATTTTATTTCATATAGTAAAAGCATTAACAGAAAATGAGCTGTTTTCATCattatgatttatatatagtgAAAATTTCAGAATGTATTCAGTTATACATTGATAAAGTCTAATAGTGGACATGTTAAGAGTTAGCATGAACGACATAGTTAAATCAGACTTGCTCAGATTCACTTCAATGCAATAAATTTGCAATAAAAGTGTCAGCATAACTATAGTTCATTACTCGAACTTCAATATTAATATGAACAAGTTGAAACCgtatttaaatataaagaatAATGAAAGAGCGTTTTCACAAGCACTGTTCTGATCTCACGTTTCATATTTGACGTATTTATTgcctattttattttcattatgtatgcgtgtgtgtgtgtgtgttagttttaCTGAATTGATTTTGTGTATCGTTTTGGCTTCTTGCATGCATTCCTCATTGACGTGTACATCTATATCCAATGGTTCTGTGAACTGCGATttcaaacattt
>TCONS_00028138
ATGGGCTGCGCTGGATTCACCTGCTCCAAGAATTCCCTGTGTGCGCTCAACATCCTTTATGTTATGGTGAGTTTGCTGATGATCGGCATCGCCGCATGGGGGAAGTGTTTCGGGCTGGTGTCCAGTTTCCAGGTGGTTGGTGGCATCATAGGAATTGGGGTTTTCCTCTTCTTTGTTGCTCTTGCTGGACTCATTGGTGCCATGAAGCACCATCAGGTCCTGCTGTTCTTTTACATGATCATCTTGTTCCTGGTGTTTGTAGTTCAGTTTGCAGTGTCCAGTGCATGTCTGGCTATTAATGAGAAGCAACAGAATCACCTGTTGGAGGTGGGTTGGAACAACTCTTTGACCACTCAGAGGGACGTTGAGAAGAGTCTGAACTGCTGCGGTTTCTCCCACATGGATGTCAATGGAAGCTGCGCTGCTCCTTGTTTTCATTACAGCACTTGCACCACATGTGCAGCAAAGATCCAGGAGCATGCAGGAGAGGTACTGCGCTTCGTCGGGGGAATCGGCCTCTTCTTCAGCTTCACTGAGATCCTGGGTGTTTGGCTGACATACCGATACAGGAACCAGAAGGACCCACGGGCGAATCCCAGCGCTTTTCTATAGGTCAGATTCTCCTCATTTTGTCATTTGACCACTGAAATATTCACTGGAGCTGTTACAGAAAGTGTGCGTTTGCTTTTACCCAAAAGAAGAGGAGACCAGCCTGCGTGTTCTTGCTGCTATATATTATTATGTGCTTGATTTTTTCAAGATTACAGTGTGACCGCACTGTACTGTGCGTTATATGAGGCTGTATGTTATGTAATGAAAGAACACAACACCAAATATTAGTATGCAGTACTTGCAGTAATGGGCTAAACAATCAACACCATTTGGTTTAATGTTAACCATTTTATTTCATATAGTAAAAGCATTAACAGAAAATGAGCTGTTTTCATCattatgatttatatatagtgAAAATTTCAGAATGTATTCAGTTATACATTGATAAAGTCTAATAGTGGACATGTTAAGAGTTAGCATGAACGACATAGTTAAATCAGACTTGCTCAGATTCACTTCAATGCAATAAATTTGCAATAAAAGTGTCAGCATAACTATAGTTCATTACTCGAACTTCAATATTAATATGAACAAGTTGAAACCgtatttaaatataaagaatAATGAAAGAGCGTTTTCACAAGCACTGTTCTGATCTCACGTTTCATATTTGACGTATTTATTgcctattttattttcattatgtatgcgtgtgtgtgtgtgtgttagttttaCTGAATTGATTTTGTGTATCGTTTTGGCTTCTTGCATGCATTCCTCATTGACGTGTACATCTATATCCAATGGTTCTGTGAACTGCGATttcaaacatttgaaaaaaataaagactCTGAagtcacatttttgttttttggtcagTGTGGTGATTGTGTAAAGTTGTTGTTGAGTTTGCATAATGCTGTTTTTTAGGCTTACGTTGTTATAACAgtattaagataaaaataaaaatggcacaGAAAAATGAATTGGTTAACTTTATCATATTCCATTTAAAAAGtacttgctgaagtaaaaagataaatataggcaattccatgcaaatgtcaaccttgccatgacaAAATTAAGTTTTTGCCTAAAAAGCGAAACCGTTTTTGCGATTTCTGTTCAACTAAGTATTTTAGActgctttaaaaatacttaaatacactctgttaatgttttcatacaattaaatttgtatatttacCAAAATctcacaagtgccaatttcacatctataagggagctttttcctcataaatgcaaaaaatgtcaaataaaagaaagtaaaatcaaacgtttttgttctatagtgagggcagtttaattcacagaaattatacaaagtatgttgtatactgcaaactcGCTAACTTTTTTCATCACTTCATAGcgcgtgtttttttatttttctcatttaaattattaaaaatgtttacagattgatatttttccgATCCCTTAActttgtggttagttgttttggaaaatataaacaaatgtttcaatataatgttaacatatccTTT

Function

symbol description
tspan13b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN13 (tetraspanin 13).

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-45 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN13 (tetraspanin 13).

Ensembl:

ensembl_id ENSDARG00000070479

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028137 False 1597 mRNA 0.41 6 30387999 30399178
TCONS_00028138 True 2087 mRNA 0.36 6 30388186 30399876

Neighbor

gene id symbol gene type direction distance location
XLOC_014118 si:ch73-130a3.4 coding upstream 527665 29854223 ~ 29860334 (+)
XLOC_014117 hdac1 coding upstream 566398 29808471 ~ 29821601 (+)
XLOC_014116 marcksl1b coding upstream 587187 29798064 ~ 29800812 (+)
XLOC_014115 NA coding upstream 636256 29746138 ~ 29751743 (+)
XLOC_014114 NA coding upstream 780996 29459117 ~ 29607003 (+)
XLOC_014120 mrps18b coding downstream 23241 30423117 ~ 30428901 (+)
XLOC_014121 si:ch211-215a10.4 coding downstream 50249 30450125 ~ 30468234 (+)
XLOC_014122 BX510301.2 coding downstream 95233 30495109 ~ 30516680 (+)
XLOC_014123 BX510301.1 coding downstream 118579 30518455 ~ 30518573 (+)
XLOC_014124 BX510301.3 coding downstream 187990 30587866 ~ 30589951 (+)
XLOC_014111 CU469458.1 non-coding upstream 1184742 29203142 ~ 29203257 (+)
XLOC_014110 NA non-coding upstream 1280305 29105935 ~ 29107694 (+)
XLOC_014109 NA non-coding upstream 1563609 28788968 ~ 28824390 (+)
XLOC_014125 CU463182.1 non-coding downstream 231067 30630943 ~ 30631060 (+)
XLOC_014127 NA non-coding downstream 325120 30724996 ~ 30725703 (+)
XLOC_014128 NA non-coding downstream 400176 30800052 ~ 30801988 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_08400578_08406066 NA coding CI01000054 null 8400531 ~ 8406066 (-)