XLOC_014121 (si:ch211-215a10.4)


Basic Information

Item Value
gene id XLOC_014121
gene name si:ch211-215a10.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30450125 ~ 30468234 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028140
GTGGCAGTATCACTTGTTGGCCACTGGATGTCCCTCTAACAGGCGGATTCTGCTTCTAGAAGGTGTCGTGCGCACGCGCTCTGACGCAGGCTGGCGCTGGGCAAGGACATAAGGAGAGTGACATTTGTATAACGTTAACAAGAAACTCGCATTCTTTCCTAAATCCCACATAAATTTTCGTCAGCCACATTTGGATACTCCCACACATCTATGCACAGCGCGTTGACGCTCAACAGCATCTCGTATGATTCACTGAGGACAGGTTCTGGAGGACTGAATTCACACTGTGAATGAACGAATAATTAGAAGCAGTGGTGGATGGGAGAGCGCACCTTTCTTGCTGTTGATGTCATCTTTCTAAGACTCGTCGAGGTGTCCTCAGCACCCTGACTTGAATGGCTGTGTGCAGAGGGGGCGTCTCTCTTTGGGTGGGGTGTGTCAGGAACCATGGCGGAAGGCAACCAATGACAAAACAGTGCTGGAATTTATGTCAGACAACCGAGTTTCACTTAAATGACAACTGTAGGACCCTGAGCAGTGCATCATGGGCCTTGGCTCCTCCAAATAGTCTACGTTACCTGTCCATTAAACAGCCAGCCCTGTCCCATCCCTTCCACCATGCATGTCAGCCCAACCGATCGGCCAACCTCGAAGAAGAGGAATGGGAAGAGACCGTCAGCTTGCAAGTCCTGTTCAAACCTGGAAGAAGCCATGAGCAGCACATGGTGGTGGAAGAGCCCTTTATTGGGCCTGCCAAATTAAGCGAGCTCCTTGCTCTGGGACCCAACAGACCTTTTGACTTGCTTTTTCCTTTAACCACTGTTGATGGAAGCAGGGAGGATGATATTAGCATTATTGGAAATGCAGGGACTGCGGAAAAGGAGCTGATGGAGTCTCCTTCAAGCTCCTTCAGGAGTCTCTTTGAGACTGAGGGATGTCCTGCGCCGTTTATGCTGGGATCTCGCTTCTATTGTTTTCACTCCTCTGTTTTGGAGATCGGGAACCAACCAGGAAAGGGACAAGATGAGTGGAGCTTCTATCCAGCCCTCCATGTCACACATTGCAGCCGTGATGAGACTGGGAGAGCGGACAAGAGCTCCAGCCAGAGAGACATGGAGAATGAGGAGAAACTGGCCCTGATGCATGAGAAGCTGAGGGTGGAGCTGCCCAGATTCTTTAGGAAAAATCATGACTACAGCATATACTCTGAAGATGTTGAGTTCATCAATGGTCTTCTGAACACCAAGACAAGGGGTCGTGTGGTGTACCAGCTGACTCTAACTCTTTGGAAATTGATGTGTCTCTTCTACTATGCCGATGCTCAGCTGGAAGTGCTGAAGCTGACCAAGCATCCAGAAGACGGCTCCATCAAAGCTCGCTGGAGAGTCAAAGGCCTGCCCTTCCACTCCATTCTGGTGTTTTTCTATAAGAAAGACAAGAATCACCTCTACAGAACATATGATGCATTCTCCACCTTCTACATTGGAGCTGATGGACGAATACATTGCCATAAAGTTGAAAAGGTAATGGAGGCTCGTCCACCTCTGCTGCCCAAAGTGGCCTCAATGCTTGGCGGGGCTCTGGTGGCCCTGGGCATTCAGGAACACCGTCCCGCCCTCAACCTGCTCCCACTCCTGCTGTCCTCCCTCCGACAGGCCCGAGCCTGAGCCGAGAACCTGCGCTGATTGGTCACACCATTAAAAAGACTGTAAAAGATGTGGCGCTCTATTATGTGGGTTGAGTAAATAAGATGTTGATAACCAATTCcttgggggaaaaaaagattgCAGAAGTAAGCCGGAACGAGTTAAAACTGATCTCACTTGAAACAATCTTCTAATTTCCATGATATGAATATCACCAACCCGATATCATATTTGGTTTGGATTGTGATGGGAGCCTGTATTTAAGATTAAACTCCACT

Function

symbol description
si:ch211-215a10.4 Is expressed in female organism. Orthologous to human C6orf136 (chromosome 6 open reading frame 136).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5518 Is expressed in female organism. Orthologous to human C6orf136 (chromosome 6 open reading frame 136).

Ensembl:

ensembl_id ENSDARG00000056165

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028140 True 1924 mRNA 0.49 7 30450125 30468234

Neighbor

gene id symbol gene type direction distance location
XLOC_014120 mrps18b coding upstream 21224 30423117 ~ 30428901 (+)
XLOC_014119 tspan13b coding upstream 50249 30387999 ~ 30399876 (+)
XLOC_014118 si:ch73-130a3.4 coding upstream 589791 29854223 ~ 29860334 (+)
XLOC_014117 hdac1 coding upstream 628524 29808471 ~ 29821601 (+)
XLOC_014116 marcksl1b coding upstream 649313 29798064 ~ 29800812 (+)
XLOC_014122 BX510301.2 coding downstream 26875 30495109 ~ 30516680 (+)
XLOC_014123 BX510301.1 coding downstream 50221 30518455 ~ 30518573 (+)
XLOC_014124 BX510301.3 coding downstream 119632 30587866 ~ 30589951 (+)
XLOC_014125 CU463182.1 coding downstream 162709 30630943 ~ 30631060 (+)
XLOC_014126 fam49al coding downstream 165219 30633453 ~ 30684874 (+)
XLOC_014115 NA non-coding upstream 698382 29746138 ~ 29751743 (+)
XLOC_014114 NA non-coding upstream 843122 29459117 ~ 29607003 (+)
XLOC_014111 CU469458.1 non-coding upstream 1246868 29203142 ~ 29203257 (+)
XLOC_014110 NA non-coding upstream 1342431 29105935 ~ 29107694 (+)
XLOC_014109 NA non-coding upstream 1625735 28788968 ~ 28824390 (+)
XLOC_014127 NA non-coding downstream 256762 30724996 ~ 30725703 (+)
XLOC_014128 NA non-coding downstream 331818 30800052 ~ 30801988 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_08353876_08358232 NA coding CI01000054 null 8353376 ~ 8358232 (-)