XLOC_014129


Basic Information

Item Value
gene id XLOC_014129
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30832290 ~ 30836205 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029956
CATCATTGATCCAACGCCGTCTTCGTTTGGTCATACCGACCGCTCGTCATTTCCAAATGGATTGCAGACATCCTCATGTGACCTGACAAAATGAATCAACCTGCCAACAGAAGAGCCACAAAACCACAAAGCTGACTGGATAAATAGCCTCCATTCCAGCAGAGGAACAGCCTTTCAACGGAGACCTACTGGAATGCAGCTGGTGTTAACAGAGAAGCTACAAATCTGACCTGCAGTCTGTTCGAAATCAAGATTAGCCTTACAAAGAGCAGCGTTCAGCCAGGATGGTCCAGATGACCCAAGGTGACCTGTCCTAAAACGAGATGGACCCTAGTATATCAACACAATGTGCAGACAATGGTAGCGGTATCTGGCCTCAATGCTCATAAATATCAGTTCAGTGTAGTCATTGGAAATACCatcctgatctcacgaggaaacagaactattttacattttgtcagtttagaatTCATGCATAGAATTCATtcgtacgatttttaaaaggaagccTGGCAccgaaccccacccctaaacccaaccatcattggaagGTTAGCAAATTGCACTAAAAGGTATGAACGGGATCAtacaaatttatatgaattagcaactaaatcaaaaagttatagaTTGGCGTAAGATACCATTGGAAATACATATttcagtctacatttttgtgaatccacaaaaaaaaatatataataaatacatcgACATATATTTGACTGTAGTTTCTGGGTAAAATGTATGTAACAGGGCAGTAGGACATCTTACATCATTCTTACACActgtggctcggtggttagcactgtcgcctcacagcaagaaggtcactggtttgttggtcagttagcatttctgcgtgaagtttgaatgttttccccatgcttgtgtgggtttcctccgggtgctccggtttcccccacagtccaaagacatgcagtataggtgaattggatgaactaaactggctgtagtgcatgagtgtgagagtgtatgtgttttctagtgctgggttgcggttggaaaggcatctactgtgtaaaacttatgtcggaatagttggtggttcattccactgcggtcgaagtcaaaggaaaattaataaatgattgatGTATAAAGGATTTGttttgtgcagttctttgcacaataccaaacaaacaaatgacacaaaacaacacaacagtTGATATGATTAATAATTGAATACATTTGCCTCATCTATCTATCTCCATAAGGATAATTTTTTTTGGTCAGTTTGCTCAGAATAGCTCAGTTTTTGTTGTGCTTCAATACAAAGCAATTTGTTTGATTTATCTAAAACAAgttccacaaaagagataaaagtaATGTATCAAGTTCAAACTATTCAATCGCAGCAGacttttctcttacatttgctttcgaaaacactattggttgggtttagatcagtggttcaaTATATATCAACTATACTACAAGCCCCGCCTTCTCATAGATGTGTACAAGAAAGACATGTacctgaaatgtacaacaaaatgtacccgaagcaatgtttttcagatttgcaaaaatgtagacagcgcccacTAGAGGATCTGAAACATGCGTCGAAATGTACCCGAAGCAAAGTATTTATACAAATgtgttttcacaaaaatgtaggccgAGGcaagtatttccaatgagcctggctATCCTACAAGCATTTTCATTCTCATACTCTCATACTCATACTTTTTGAGAATTCTAATGCTTTCACCAAAAGTGTTTAAGCTGTTATTTGTGCACCCACAAATATTTAGTGGTTTTTTAAAgcacaattaaatatttaaagctgAAACCGTGGTCTATTATGATTCATAAAAATGCAAGTCCACAACTTCTGGCAATATGAGAGGCCTAAAAGCATACGGTGTACTGAACAGTAAGAACAGGAAGAAACttaaaattattaacaaaatgataaccttaaattattatattaatattgccTTAGCAAACTTCCTTCATTTGCAACCACAAGCTACTGCTATTTATTTAACAAGAGAAAAACTCATTCTCATTTTTTGTCAAATGAATGAAGTTTCAACAGTGTCCACAAACATCAGTTCAATTTCAAGTCTTCAACAAAGCAGCACAGGCTCTGTGTTTATACTgtgggaaaaaaatgaaaaaggcattgggtttactcacttttttaaagttaagtcCACTGTTtaaagggtggcacggtggctcagtggttaaaaggtcactggttcgagtccagatTGGGCCAGTCGgaattcctgtgtggagtttacatgttttccccattttcgcataggtttcctctaggtacagtccaaagacatacggtgtactgggttgcagctggaagggcatccactgtgtaaaacatatgttggaatagttagtggtccattccgctgtggtgacccctgacaactaagagaataagctgaaggaaaatgaataaaggaagtCAACTGTTCATTACTGTTTTAGACAAAGTGCACATTTAACATAGCGCAAACTCAAATATAGTGTAAACATTGATCCATGACATCAAAATGCTCTTTCTAGCAGCAAGGGTTAAAAGGCAAAACAATTGTTGTTCATACTTGCTCCTAATCAGTTTGCAAGGAAAACCCAGGAGAAGGGAAAAGGTCTATATCCATGTCCAAACCAAATATGTTGTTTATTTGAGCAACGATTCTGCACAAATGGGCCTGAATCACCTGACAGTCTCGTTTGCAATGAATATGATCCCCTATATTTAATTTGCATAGAGGTGAGCGGGTTTGTTGTATTTAGGTCTTAAATAAGGTGTGATATGATTTCTGTGAAGGATCCTGAGTTGAATGGCTCTGGCCCTGTTGCAAACTGAAAGCTTATTGGCTAGAGACCAAACCATCTCATATTCTTCTTCCAAGGTATCCACTTCAAGCTCTTTTTCCCAAATTGATCTGAGATGTGAGTTACAGAGAGTGTTATAAGAGCACCTGATATTATACCCAAATCTAATGATGATCTGTGCCAGAAACTGAACATAACTCTCAACTTTATTCCACAGCCTCTGTCAAATTTTACTTCATTTGTAACCACAATCTATTTTGTGCTGTTAAACATGGGCACAAACATTTTACTAAAACggaaaagaacatttaaaaacacataatatttaaaaaataaaaagattttactgtaatcaaaatagtttttttccccATTTGATTCAGTTTAAAGGTTGCTTTTATTGAAATGCAGTTCAAGAAAACAGCCAAAGAAGAAAACAGCTGTTGCCTTGCCAGAAGACAATTGCTTCCTATGTGCTCACAGCGGGAGAAAACTACTGTTTTGTTGTTGCATAGGGGaacgtctgtgtgtttgtgtgtgcctgtTTAGCAAGGAGGATCAAAGTCAGGACAATAATGTACATTACACCAAAATAGTTGCAAATTGCTGTGCTAAAAACATTGAGTCACATGGGGGTCTTGACTGGAAGTGGCTTATCTTCTAAATTGCTAAGAATATCTAGGGACCTTGGGGGTTTTATTGTGGACAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029956 True 3561 lncRNA 0.38 2 30832290 30836205

Neighbor

gene id symbol gene type direction distance location
XLOC_014128 NA coding upstream 30302 30800052 ~ 30801988 (+)
XLOC_014127 NA coding upstream 106587 30724996 ~ 30725703 (+)
XLOC_014126 fam49al coding upstream 147416 30633453 ~ 30684874 (+)
XLOC_014125 CU463182.1 coding upstream 201230 30630943 ~ 30631060 (+)
XLOC_014124 BX510301.3 coding upstream 242339 30587866 ~ 30589951 (+)
XLOC_014130 NA coding downstream 5434 30841639 ~ 30843233 (+)
XLOC_014131 mfsd2ab coding downstream 31640 30867845 ~ 30884054 (+)
XLOC_014132 yars1 coding downstream 48501 30884706 ~ 30895273 (+)
XLOC_014133 NA coding downstream 132807 30969012 ~ 30970025 (+)
XLOC_014134 sync coding downstream 153924 30990129 ~ 30997794 (+)
XLOC_014123 BX510301.1 non-coding upstream 313717 30518455 ~ 30518573 (+)
XLOC_014137 NA non-coding downstream 302622 31138827 ~ 31153090 (+)
XLOC_014138 NA non-coding downstream 321442 31157647 ~ 31218099 (+)
XLOC_014139 NA non-coding downstream 414715 31250920 ~ 31348348 (+)

Expression


Co-expression Network