XLOC_014132 (yars1)


Basic Information

Item Value
gene id XLOC_014132
gene name yars1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30884706 ~ 30895273 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028150
TCGACAGCAGCTTAGTGATCGTCCCTCGATTACTCGTCCTGCTGATGATTGCTCGACAATTTATTGTTCAGAGCTGATGCAATACTGCCATTACAAGGCAAAATATGTTAAAAACTGTTATCTAATACGTATTTAAGtgcatttataaaattataaataattagatatttttaaaaatgtgtctatACAATTTTAACTGAAGTGTAATTAAACTTTTATATTAGATGTGGCTTTTATTATGATACACGTGATGAAATCTTGGTTCAACCGGAACAGCCTGTCACCGGCACACACGTTTCTCAGCGACCGCCGAAGCAGCAGACATCATGGGAGAGCAGCTGAGTCCTGATGAGAAGTTCCAGCTCATCACCAGAAACCTTCAGGAGGTTCTTGGTGAGGAGAGGTTGAAGGAGATCCTGAAGGAGCGGGAACTGAAGGTTTACTGGGGAACAGCGACTACAGGCAAACCCCATGTTGCTTACTTTGTCCCCATGTCAAAAATTGCTGACTTCCTGAAGGCGGGCTGTGAGGTGACCATCCTCTTTGCTGATCTCCATGCTTATCTGGATAACATGAAGGCTCCCTGGGAGCTGCTGGAGCTCCGGGTGAAGTATTATGAGCAGGTCATCAAGGCCATGTTGGAGAGCATTGGAGTTCCTCTTGACAAACTCAAATTTGTCAAAGGCACAGATTATCAGCTCAGCAGAGAATACACTCTGGATGTTTACCGACTGTCATCCATGGTCACTGAACACGATGCAAAGAAAGCAGGGGCAGAGGTGGTCAAACAGGTTGAGCATCCTCTTCTCAGTGGTCTGCTGTATCCTGGACTACAGGCACTGGATGAGGAATACCTAAAAGTAGATGCTCAGTTTGGTGGTGTGGACCAGAGGAAGATCTTCACATTAGCTGAGAagTACCTGCCTTCCCTTGGGTACACCAAACGTAGCCACTTGATGAACCCAATGGTTCCAGGACTGACTGGGAGCAAGATGAGCTCCTCAGAGGAGGAATCCAAGATTGACCTGCTAGACAAGAACCAAGATGTGAAGAAGAAGCTGAAGAAGGCGTTCTGTGAGCCTGGAAATGTGGAGAATAATGGAGTTCTGTCTTTTGTCAAACACGTGCTTTTCCCTCTGCACTCAGAGTTTGTGATTAAAAGAGATCCAAAGTTTGGAGGTGACAAAGTCTACACAGATTTTGAGGAAGTGGAGAAGGACTTTGCTGCAGAGCAAATTCATCCAGGTGACCTGAAGGCTTCAGTAGAATTGGCTCTTAACAAACTGTTGGACCCTATCAGGAAGAAGTTTGAGAGCCCTGAGTTGAAAAAACTGACATCATCTGCTTACCCAGAACCATCTAAAAACAAAGGAGGAGCAAAGGGCAACCCTAAACAAACCACAGATGACGATGAGGTCATCCCATCCAGATTAGACATCAGAGTGGGAAAAGTCATCAGTGTAGAAAAGCATCCAGATGCAGACTCACTATATTTAGAGAAGATTGATGTGGGTGAAGAACAGCCGCGGACTGTAGTGAGTGGACTGGTGGCTTATATCACAGAGGAACAGCTTCAGGACCGACTCGTTGTGCTGCTCTGCAACTTAAAGCCCCAGAAGATGAGGGGGATTGAATCTCAAGCAATGGTGCTTTGTGCTTCAATCGAAGGAGAGCCCAGGAAAGTGGAGCCTTTGGATCCACCAGAAGGATCTGCAGCAGGAGATCGTGTTTACGTAGAGGGCTATGAATCTGGCAAACCAGACGATGAATTGAAACCAAAGAAAAAGGTGTTTGAGAAGTTACAGGTTGATCTGAAGATCTCCGGCGAGTTTGTTGCACAATGGAAAGAGCAAAATCTGATGACCAAACTTGGACGAATCACCTGCAAAACACTTAAAGGTGGAAATATCAGCTAGAATATCCACACTATTTTTCTCAAGCTCCAGTGGGAGAGTTTTCATGACAGCCGTAATCCACATAACATCTACACTGTGTATATCACTCATCATAGGCATCAAAAACTGAACTAATAGTTCACCATTACTGCAGAAGAATGCATAGGAGTATTGTCTGTCCTTTACATTGCATGTAATGGCGTCCAAGATGATTTATGCATTAAGTACTGCAGTAAACATGCTAATATGCATTAGTGATAAATGGGGAATCTTGCAGGAGCTCATCTGTTATCTTAAAACTCAGGTTTTCCTGTGGTGCCATGTCTGTTGATCAGTGCTTATAATGATCAGTGTGACAATGTACAAACTATTATTTAACCTTCAAAGTAAACGGTTCAGATGTGGGACAATCTACAGTATATAAACAGCAAAATGTTATGGTGAATATTTTAAGATTAGTTGTTCCCAGAAAACAGCTAGAATTTCAGATAACGTAACATTCAGATCTAATGTTAACCAGACTCACTCAAATAAAGGATGATTCATAACT
>TCONS_00028151
AATCTTGGTTCAACCGGAACAGCCTGTCACCGGCACACACGTTTCTCAGCGACCGCCGGTGAGATATAATAAGCAGCAGACATCATGGGAGAGCAGCTGAGTCCTGATGAGAAGTTCCAGCTCATCACCAGAAACCTTCAGGAGGTTCTTGGTGAGGAGAGGTTGAAGGAGATCCTGAAGGAGCGGGAACTGAAGGTTTACTGGGGAACAGCGACTACAGGCAAACCCCATGTTGCTTACTTTGTCCCCATGTCAAAAATTGCTGACTTCCTGAAGGCGGGCTGTGAGGTGACCATCCTCTTTGCTGATCTCCATGCTTATCTGGATAACATGAAGGCTCCCTGGGAGCTGCTGGAGCTCCGGGTGAAGTATTATGAGCAGGTCATCAAGGCCATGTTGGAGAGCATTGGAGTTCCTCTTGACAAACTCAAATTTGTCAAAGGCACAGATTATCAGCTCAGCAGAGAATACACTCTGGATGTTTACCGACTGTCATCCATGGTCACTGAACACGATGCAAAGAAAGCAGGGGCAGAGGTGGTCAAACAGGTTGAGCATCCTCTTCTCAGTGGTCTGCTGTATCCTGGACTACAGGCACTGGATGAGGAATACCTAAAAGTAGATGCTCAGTTTGGTGGTGTGGACCAGAGGAAGATCTTCACATTAGCTGAGAagTACCTGCCTTCCCTTGGGTACACCAAACGTAGCCACTTGATGAACCCAATGGTTCCAGGACTGACTGGGAGCAAGATGAGCTCCTCAGAGGAGGAATCCAAGATTGACCTGCTAGACAAGAACCAAGATGTGAAGAAGAAGCTGAAGAAGGCGTTCTGTGAGC
>TCONS_00028152
CTGTCACCGGCACACACGTTTCTCAGCGACCGCCGGTGAGATATAATGTATGTTATTATGAACATCAAAATTTTGTTATAGTTATTATCACTGACGATTTATAAACACAATATTCACATTTATACCGACACATTTTCCGCTCTGCAGTGTTTCTAGTAACGTTACTGTGTTTTAGACAGCTCAGCGATTCATTCATTACAGACGTCACTGATTCTGAATAATTGAGATCGTAAAAACGTCAATCGTGACACAAAGTTTCTACCGAAATGACAAGTTCTGTGTATGTCTATTACTTGACATATACACTTATAATACCTTATTTTGCACAGAAGCAGCAGACATCATGGGAGAGCAGCTGAGTCCTGATGAGAAGTTCCAGCTCATCACCAGAAACCTTCAGGAGGTTCTTGGTGAGGAGAGGTTGAAGGAGATCCTGAAGGAGCGGGAACTGAAGGTTTACTGGGGAACAGCGACTACAGGCAAACCCCATGTTGCTTACTTTGTCCCCATGTCAAAAATTGCTGACTTCCTGAAGGCGGGCTGTGAGGTGACCATCCTCTTTGCTGATCTCCATGCTTATCTGGATAACATGAAGGCTCCCTGGGAGCTGCTGGAGCTCCGGGTGAAGTATTATGAGCAGGTCATCAAGGCCATGTTGGAGAGCATTGGAGTTCCTCTTGACAAACTCAAATTTGTCAAAGGCACAGATTATCAGCTCAGCAGAGAATACACTCTGGATGTTTACCGACTGTCATCCATGGTCACTGAACACGATGCAAAGAAAGCAGGGGCAGAGGTGGTCAAACAGGTTGAGCATCCTCTTCTCAGTGGTCTGCTGTATCCTGGACTACAGGCACTGGATGAGGAATACCTAAAAGTAGATGCTCAGTTTGGTGGTGTGGACCAGAGGAAGATCTTCACATTAGCTGAGAagTACCTGCCTTCCCTTGGGTACACCAAACGTAGCCACTTGATGAACCCAATGGTTCCAGGACTGACTGGGAGCAAGATGAGCTCCTCAGAGGAGGAATCCAAGATTGACCTGCTAGACAAGAACCAAGATGTGAAGAAGAAGCTGAAGAAGGCGTTCTGTGAGCCTGGAAATGTGGAGAATAATGGAGTTCTGTCTTTTGTCAAACACGTGCTTTTCCCTCTGCACTCAGAGTTTGTGATTAAAAGAGATCCAAAGTTTGGAGGTGACAAAGTCTACACAGATTTTGAGGAAGTGGAGAAGGACTTTGCTGCAGAGCAAATTCATCCAGGTGACCTGAAGGCTTCAGTAGAATTGGCTCTTAACAAACTGTTGGACCCTATCAGGAAGAAGTTTGAGAGCCCTGAGTTGAAAAAACTGACATCATCTGCTTACCCAGAACCATCTAAAAACAAAGGAGGAGCAAAGGGCAACCCTAAACAAACCACAGATGACGATGAGGTCATCCCATCCAGATTAGACATCAGAGTGGGAAAAGTCATCAGTGTAGAAAAGCATCCAGATGCAGACTCACTATATTTAGAGAAGATTGATGTGGGTGAAGAACAGCCGCGGACTGTAGTGAGTGGACTGGTGGCTTATATCACAGAGGAACAGCTTCAGGACCGACTCGTTGTGCTGCTCTGCAACTTAAAGCCCCAGAAGATGAGGGGGATTGAATCTCAAGCAATGGTGCTTTGTGCTTCAATCGAAGGAGAGCCCAGGAAAGTGGAGCCTTTGGATCCACCAGAAGGATCTGCAGCAGGAGATCGTGTTTACGTAGAGGGCTATGAATCTGGCAAACCAGACGATGAATTGAAACCAAAGAAAAAGGTGTTTGAGAAGTTACAGGTTGATCTGAAGATCTCCGGCGAGTTTGTTGCACAATGGAAAGAGCAAAATCTGATGACCAAACTTGGACGAATCACCTGCAAAACACTTAAAGGTGGAAATATCAGCTAGAATATCCACACTATTTTTCTCAAGCTCCAGTGGGAGAGTTTTCATGACAGCCGTAATCCACATAACATCTACACTGTGTATATCACTCATCATAGGCATCAAAAACTGAACTAATAGTTCACCATTACTGCAGAAGAATGCATAGGAGTATTGTCTGTCCTTTACATTGCATGTAATGGCGTCCAAGATGATTTATGCATTAAGTACTGCAGTAAACATGCTAATATGCATTAGTGATAAATGGGGAATCTTGCAGGAGCTCATCTGTTATCTTAAAACTCAGGTTTTCCTGTGGTGCCATGTCTGTTGATCAGTGCTTATAATGATCAGTGTGACAATGTACAAACTATTATTTAACCTTCAAAGTAAACGGTTCAGATGTGGGACAATCTACAGTATATAAACAGCAAAATGTTATGGTGAATATTTTAAGATTAGTTGTTCCCAGAAAACAGCTAGAATTTCAGATAACGTAACATTCAGATCTAATGTTAACCAGACTCACTCAAATAAAGGATGATTCATAACTG
>TCONS_00028153
TGTCACCGGCACACACGTTTCTCAGCGACCGCCGGTGAGATATAATGTATGTTATTATGAACATCAAAATTTTGTTATAGTTATTATCACTGACGATTTATAAACACAATATTCACATTTATACCGACACATTTTCCGCTCTGCAGTGTTTCTAGTAACGTTACTGTGTTTTAGACAGCTCAGCGATTCATTCATTACAGACGTCACTGATTCTGAATAATTGAGATCGTAAAAACGTCAATCGTGACACAAAGTTTCTACCGAAATGACAAGTTCTGTGTATGTCTATTACTTGACATATACACTTATAATACCTTATTTTGCACAGAAGCAGCAGACATCATGGGAGAGCAGCTGAGTCCTGATGAGAAGTTCCAGCTCATCACCAGAAACCTTCAGGAGGTTCTTGGTGAGGAGAGGTTGAAGGAGATCCTGAAGGAGCGGGAACTGAAGGTTTACTGGGGAACAGCGACTACAGGCAAACCCCATGTTGCTTACTTTGTCCCCATGTCAAAAATTGCTGACTTCCTGAAGGCGGGCTGTGAGGTGACCATCCTCTTTGCTGATCTCCATGCTTATCTGGATAACATGAAGGCTCCCTGGGAGCTGCTGGAGCTCCGGGTGAAGTATTATGAGCAGGTCATCAAGGCCATGTTGGAGAGCATTGGAGTTCCTCTTGACAAACTCAAATTTGTCAAAGGCACAGATTATCAGCTCAGCAGAGAATACACTCTGGATGTTTACCGACTGTCATCCAT
>TCONS_00028154
ACCGGCACACACGTTTCTCAGCGACCGCCGCAGACATCATGGGAGAGCAGCTGAGTCCTGATGAGAAGTTCCAGCTCATCACCAGAAACCTTCAGGAGGTTCTTGGTGAGGAGAGGTTGAAGGAGATCCTGAAGGAGCGGGAACTGAAGGTTTACTGGGGAACAGCGACTACAGGCAAACCCCATGTTGCTTACTTTGTCCCCATGTCAAAAATTGCTGACTTCCTGAAGGCGGGCTGTGAGGTGACCATCCTCTTTGCTGATCTCCATGCTTATCTGGATAACATGAAGGCTCCCTGGGAGCTGCTGGAGCTCCGGGTGAAGTATTATGAGCAGGTCATCAAGGCCATGTTGGAGAGCATTGGAGTTCCTCTTGACAAACTCAAATTTGTCAAAGGCACAGATTATCAGCTCAGCAGAGAATACACTCTGGATGTTTACCGACTGTCATCCATGGTCACTGAACACGATGCAAAGAAAGCAGGGGCAGAGGTGGTCAAACAGGTTGAGCATCCTCTTCTCAGTGGTCTGCTGTATCCTGGACTACAGGCACTGGATGAGGAATACCTAAAAGTAGATGCTCAGTTTGGTGGTGTGGACCAGAGGAAGATCTTCACATTAGCTGAGAagTACCTGCCTTCCCTTGGGTACACCAAACGTAGCCACTTGATGAACCCAATGGTTCCAGGACTGACTGGGAGCAAGATGAGCTCCTCAGAGGAGGAATCCAAGATTGACCTGCTAGACAAGAACCAAGATGTGAAGAAGAAGCTGAAGAAGGCGTTCTGTGAGCCTGGAAATGTGGAGAATAATGGAGTTCTGTCTTTTGTCAAACACGTGCTTTTCCCTCTGCACTCAGAGTTTGTGATTAAAAGAGATCCAAAGTTTGGAGGTGACAA
>TCONS_00028155
CACGTTTCTCAGCGACCGCCGGTGAGATATAATGTATCAGCAGACATCATGGGAGAGCAGCTGAGTCCTGATGAGAAGTTCCAGCTCATCACCAGAAACCTTCAGGAGGTTCTTGGTGAGGAGAGGTTGAAGGAGATCCTGAAGGAGCGGGAACTGAAGGTTTACTGGGGAACAGCGACTACAGGCAAACCCCATGTTGCTTACTTTGTCCCCATGTCAAAAATTGCTGACTTCCTGAAGGCGGGCTGTGAGGTGACCATCCTCTTTGCTGATCTCCATGCTTATCTGGATAACATGAAGGCTCCCTGG
>TCONS_00028156
TCTGTGTATGTCTATTACTTGACATATACACTTATAATACCTTATTTTGCACAGAAGCAGCAGACATCATGGGAGAGCAGCTGAGTCCTGATGAGAAGTTCCAGCTCATCACCAGAAACCTTCAGGAGGTTCTTGGTGAGGAGAGGTTGAAGGAGATCCTGAAGGAGCGGGAACTGAAGGTTTACTGGGGAACAGCGACTACAGGCAAACCCCATGTTGCTTACTTTGTCCCCATGTCAAAAATTGCTGACTTCCTGAAGGCGGGCTGTGAGGTGACCATCCTCTTTGCTGATCTCCATGCTTATCTGGATAACATGAAGGCTCCCTGGGAGCTGCTGGAGCTCCGGGTGAAGTATTATGAGCAGGTCATCAAGGCCATGTTGGAGAGCATTGGAGTTCCTCTTGACAAACTCAAATTTGTCAAAGGCACAGATTATCAGCTCAGCAGAGAATACACTCTGGATGTTTACCGACTGTCATCCATGGTCACTGAACACGATGCAAAGAAAGCAGGGGCAGAGGTGGTCAAACAGGTTGAGCATCCTCTTCTCAGTGGTCTGCTGTATCCTGGACTACAGGCACTGGATGAGGAATACCTAAAAGTAGATGCTCAGTTTGGTGGTGTGGACCAGAGGAAGATCTTCACATTAGCTGAGAagTACCTGCCTTCCCTTGGGTACACCAAACGTAGCCACTTGATGAACCCAATGGTTCCAGGACTGACTGGGAGCAAGATGAGCTCCTCAGAGGAGG
>TCONS_00028157
AAGCAGCAGACATCATGGGAGAGCAGCTGAGTCCTGATGAGAAGTTCCAGCTCATCACCAGAAACCTTCAGGAGGTTCTTGGTGAGGAGAGGTTGAAGGAGATCCTGAAGGAGCGGGAACTGAAGGTTTACTGGGGAACAGCGACTACAGGCAAACCCCATGTTGCTTACTTTGTCCCCATGTCAAAAATTGCTGACTTCCTGAAGGCGGGCTGTGAGGTGACCATCCTCTTTGCTGATCTCCATGCTTATCTGGATAACATGAAGGCTCCCTGGGAGCTGCTGGAGCTCCGGGTGAAGTATTATGAGCAGGTCATCAAGGCCATGTTGGAGAGCATTGGAGTTCCTCTTGACAAACTCAAATTTGTCAAAGGCACAGATTATCAGCTCAGCAGAGGTGGTCAAACAGGTTGAGCATCCTCTTCTCAGTGGTCTGCTGTATCCTGGACTACAGGCACTGGATGAGGAATACCTAAAAGTAGATGCTCAGTTTGGTGGTGTGGACCAGAGGAAGATCTTCACATTAGCTGAGAagTACCTGCCTTCCCTTGGGTACACCAAACGTAGCCACTTGATGAACCCAATGGTTCCAGGACTGACTGGGAGCAA

Function

symbol description
yars1 Predicted to enable tyrosine-tRNA ligase activity. Acts upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Is expressed in several structures, including hematopoietic system; immature eye; mesoderm; musculature system; and nervous system. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate C. Orthologous to human YARS1 (tyrosyl-tRNA synthetase 1).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006437 tyrosyl-tRNA aminoacylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004831 tyrosine-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030425-2 Predicted to enable tyrosine-tRNA ligase activity. Acts upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Is expressed in several structures, including hematopoietic system; immature eye; mesoderm; musculature system; and nervous system. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate C. Orthologous to human YARS1 (tyrosyl-tRNA synthetase 1).

Ensembl:

ensembl_id ENSDARG00000035913

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028150 False 2445 mRNA 0.43 14 30884706 30895272
TCONS_00028151 False 838 mRNA 0.50 8 30884960 30891182
TCONS_00028152 False 2463 mRNA 0.43 13 30884983 30895273
TCONS_00028153 False 758 processed_transcript 0.43 4 30884984 30887251
TCONS_00028154 False 898 mRNA 0.49 9 30884988 30891369
TCONS_00028155 False 309 mRNA 0.51 4 30884997 30886940
TCONS_00028156 False 753 mRNA 0.48 6 30885258 30891030
TCONS_00028157 True 608 processed_transcript 0.50 6 30885312 30891010

Neighbor

gene id symbol gene type direction distance location
XLOC_014131 mfsd2ab coding upstream 652 30867845 ~ 30884054 (+)
XLOC_014130 NA coding upstream 41473 30841639 ~ 30843233 (+)
XLOC_014129 NA coding upstream 48501 30832290 ~ 30836205 (+)
XLOC_014128 NA coding upstream 82718 30800052 ~ 30801988 (+)
XLOC_014127 NA coding upstream 159003 30724996 ~ 30725703 (+)
XLOC_014133 NA coding downstream 73739 30969012 ~ 30970025 (+)
XLOC_014134 sync coding downstream 94856 30990129 ~ 30997794 (+)
XLOC_014135 ankmy2b coding downstream 147729 31043002 ~ 31054326 (+)
XLOC_014136 sostdc1b coding downstream 166445 31061718 ~ 31063020 (+)
XLOC_014137 NA coding downstream 243554 31138827 ~ 31153090 (+)
XLOC_014125 CU463182.1 non-coding upstream 253646 30630943 ~ 30631060 (+)
XLOC_014138 NA non-coding downstream 262374 31157647 ~ 31218099 (+)
XLOC_014139 NA non-coding downstream 355647 31250920 ~ 31348348 (+)
XLOC_014144 BX957279.1 non-coding downstream 696251 31591524 ~ 31591540 (+)

Expression


Co-expression Network