XLOC_014142 (gmnn)


Basic Information

Item Value
gene id XLOC_014142
gene name gmnn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31541607 ~ 31592425 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028168
aacttaaaaCTAACACAGGGATCACAGCTCAAGGccaaggttatcataccatcagaatcttataccggcctatgCCTAGacttttgtttcggaactaGTCTCGTTTCAACAGTTAGCacagttcatttggcatattcatattgggtattaactagggctgtaaattcctttttttctgctcattttgatttgctttttagtcaacCCAGGCGTGAGATTGCAATATCTgggaaaacaaaatATGACAGAGTGGGACATGCATCCGGCACATCAGTTCAGTTACAGATTGACAGTGCTGTTTTGTTTGATTATGCAATTACtatacccacttgttcaggtagtgtagCCAGCCGTGAAATtcagGCTGAAAATGCTACaattagaaaaaaagtagaagatactagtattcaTATTATGACtctaaacattagaaGCACAACTGTTTTGAACTTATGTAATAAGCCGAGATtgttgtgttcatatTTaatacttttaaggcctaaaattgtgtttttgaaatGTATACTGCCAGTGTACATATGTTATAGAAAATCTAGAAAAATAGttttttttttttttgaa
>TCONS_00029962
GGTGACGTATAGAATACTGTATCCGGGTTCACGCTGCTACTCATTTGTATtgggaaaatattcatttatggaCACTTTTTAGTTCGGTCAGGTCCGGGTTgaatatatgcaaatatttacgttttattggtttatttatttattttttgcactgcttgatttttatttgccgttcttttttgttttctcaaaactaaatttcctgttgcatttctttaattttgtttgcaaaattcatgtttatttctcaaaacttaattttcgccttgcgatttttggagatttgcatttatttattcatatttatgctcaatactttgttttttgtttgcaaaactttattttattttgcaagtatttaTGGCTCTAGATTGACTCTatagccgctactcatttgaattgagaaaatattgatttatgaccactttttagccATATGTCACACAttatgtatcactttctggccatctgatattagaCATAAATATTGCGATCATAATTTTCAAAAGTATTTAagtgctttgtaaacgtttattattactgtttgttGAGTCTCAGTttaatagagcgcttggacccggaagccgacAAGCGAATATttactcactgtaaaaaaaagttgactcaaggcaacttgctgcagagctttttgagTTGACGCGACTTAAATCGATTCAAGTGCAGTACCTGGGTTAAAAGAGTCAATGCAACAAAAAGGCTGTGGAGCAAGCTGCCCTACAAATTTCAATTAGAGTCAACTTTCTTTGCACATTTCATTAAATACTAGTAACACTTCGACTGACCagtattatgattttttattttactagtaatatttttaatttaattttcattaactTCTATGGCCATTCAGAATAGTCATAACAAAAGGCAAGTTTAAAAAAGCACTTGTGAGATAAGAACTATTATAAGTGCTCGTATTGACTGATTTAAAAGCACCAGAATTGAATcgtttctgcactgtaaaaatgatagGATCAATTAATCCTGACAGCttttgtttttaggtcattgtaacttattaaactaagttaatcatcttctaacttaattttataagttacacataATACGccagctgttttaagtcagttcaaCATAATGTAAGTtgaatggactcataaggttaatttgattcaacttaacattttaaggcaaccaggatttctTAGtgtactaataaataaaaaccagGTGTTACTAAATGAAAACAAGTTTCCAACTCATCTGCTTGATTGCATGACCACCAAGgctgttcaacaacaacaacacaaaaactcCTGCTCACCCCAGAAGTGACcttttgacataaaataaaagtcCTCTTTTCTTTCCATGTGCTGCATGCACATTATTGTCATAATCAAAATCTGAACATAATACTAGGTACTAGTATGTAATTAAAAGCTGCTgctatttataaaaatatgtactagtctaaattaaaatacatatgAACAAAAGTAATTCGCTTCTATTAGCATAAATTAACTACTAGCATAAAAAGAATAGTAACTATTCACAAAGATCAAGTGTTGACTTAACAGCCACTAATATCTAATGAATGAGTATTAGTATCTTGTGAATAAGTGATAGTAGTTAATGGAAAAAGTcgtgttttcttaaaaaaaaaaaaaaaagataaatactaGTAGCATAAAAGTAGATACCTGTGCATTTTGTAGATGAAAATGGTTTGCCAGAGTATCAGTAAAGAGATTAAGAACTCCTAGTTTGTCATTGTGAGCTTTTGTTTATTATTCACCTTGTTTTGCTTCACATATTCATGTCGTCAGCAAGGAGCTCTCAGTGATGGATTTCCCAGTAATTGAAATGAACACTTTACTCGGTAATGACTTCATTCTCCGTGTCACTTGAGAGTCTGCGTTTGGTTTACAGCATCAACACTAAGAGCATCACCATTATCTGACAATCAACCGAACACTAGCGCTGCTCATTCTGAAGGACCGTCTCGTCTCGTTTTACTCTCTATTTACGTCTGCCGTCATAGTTTTGCTGCTACTTAGACTGTAGGGTCTGAGTGAAATGCTGACAAGGGCTCGAATTAGTATTGCAATTTTACTAGGTGATCAACAGctacttgttttttgtttgtttatttttcttacatAGTGAGTGTGTGCAAATAAATAGATTTTCTAACAAGCTGTTACATTTATTTCGAAAAGTGCTGGCGTAACGGTTCACTGTGGAGCCAGATCAGTCCCAAAAATAATACGTTCACAAAATAAAGTTCACACTTGCagagcacaattcacatttatacaatccaattcgtaaatttaaacacaattcataaatacacaaaacacaatttgtaaaattcacaacacaattcataaatacacaaaaaacaattcatacatacacaaaacacaatccaaaaatacacaaaacacaatccgaaaatacacaaaacacaatccgaaaatacacaaaacacaatccaTAAATGCAGAAAACACAATATGTaaaatttaaacacaatttataaatacacaaaacacaattcatgaatacacaaaacaatttgtaaattctaaacacaattaataaatgcacaaaacacaattcagaaatgcacaaaacaatttgtaaaatctaaacaattcataaatacacaaaacacaattcagaaatacacaaaacacaattcagaaatacacaaacaattagcaaattctaaacacaattcagaaatacaaaaaatgcaatccataaatacacaaaactcaacttgtaaacacacaaaacacaaatacacaaaacaatttataaatacacaaacagtTTGTAAATTCTAAACACAATTCATGAATACACAAATGACAATTTGTAATCTAAACACTAAACAcatttcataaatacaaaaaacacaatTCATTAATACACAAATGACAATTTGTAAACTCTAAACACAgatcataaaaacaaaacacaacgcataaattctaaacacaactcataaaaacacaaaacacaattaattaaaacCAATCCAATTCgcaaatttaaaacaattcataaattcaaaacacaattcagaaatacagaaaacacaaaaaattgtgttttggtttattgaattgtgttttgtcttcatgaattgtgttttggtGAATTGTGCTCTACATGtgtgaattatatttttgtaaacatATTATTGTTGAGACTGATCTGACTCCACGGTTCACAAATGGACACATTCCTTAAACTTTAAAATGAGATGGAtgacttgtttatttgtttgtttcaaacCCCTGGGTTTTCTGAATTTAGCAATAAACAAGCTGAACATGCTGACTCGCCATCTGAGTTACATTGTAGAGATCCAACAATCCTGGTCTTGTGTTACGATGTCAACCTGCCTTGTACCTCTTGCTGCCTAAGACATTGAAACAGGACTCTTGCCTTTTCCAGCAGGCGTGAGATTGCAATATCTgggaaaacaaaatgtaaaattgcattaaaaaaataaataaatgaaaggacTGAATTAGAGGATGTATCAGTGCTTTGTCTTAATTTTCAGTTCAGATGACAGAGTGGGACATGCATCCGTGCGTATATTATGGTGTGTAAATGGTCTTGAGTGGTTGTTGGCACACCTTAATCTGACATTACAGGACTTTATTTCTCCAtgtatttcttttaaaatgtcatttcagaTTAGGGCACATCAGGTACTATGCTGAATCCTCTTGACCCCTTTGACAAGTGcattttacatacactgtattttGTAATACAGAGAGTTTTGCAGTGTAAATTGATATGTATCGCTGTACCATGCTTGTtcagtgttatttattaaataaaatggtttgaaaaaaaaaaaatgcacaagcgTCATGTATTGTGCTGTGAGCTTTGCATAAACGCC
>TCONS_00028171
CTTTACACACAAACTAGTGCTGCTCTGTGTATGTTTTTGTGAAGCGAGCGATTGTATTCTGAATTAAGTGCAAGTATGAGTTCCATCAGAAGACCAAAGAATGCAGAAAACCCGTCTGAAAACATCAAGAAATTCCTGGTAGCGCCAACATCTGGAGCAGGAATGGGGAGGAGGACGCTTCAGGTGCTTCAGCCCTCCGCTGTAAACAAAAACCTCGGTCGTATAATTGAGAATGGTAAAGCAGTGGCCAAAAGGAAGATGTGGAGCGCCGAGCAAGTGAAGGGTTCAAAGAGAGTCAAAGCAGAGGTGGCTGTCAAATCCACAAATGCAGAAAATGAAAACCAGCCTGAGGGGGTCACACAAGAGGCCTATGAGCTCATGATCAAAGAAACTCCTGGTTCCTCCTATTGGAAGGAGGTGGCAGAGGAAAGGAGGAAAGCCTTGTTCAGTGTTCTCCAGGAGAATGAAAAGTTGCATAAAGACATTGAAGCCAAAGACGAACAGATTGCTCAGCTGAAGACTGAGAATGAAGAGTTGCAGGAACTGGCGCAGCATGTACAACACATGGCAGACATGATCGAAAGATTAACTGGAAAAAGTCCAGACAATCTAGAAGAGTTGCGTGAGATTGCCTTTGATGCTGAAGATGAGGAGTTGGAGAATGAAAATGAAGATGAGGAAGAACATGAAGATGAGGATCAGGAGCATGACTGTGAGGGTGAAGCTGATGAAAGTCAAGACACTGAAGAAAACCCAGAATGGTCTATAAAACACAACGATTCTGCAACAGAAGAAAGCTGACATGAGTAGGTGAACTGAAAACCGCCTTGATGGACCAGTTGTTTGGTCTGAAGTGATGAATGTTTAACTTTTTGCCTTTCAGAActaatgtgcaccttttttattttaatactttttctttTGCTGTAAATGAGCTTTTATTTTCACTATCTGTAGTTGTGCATGTATACTGCCAGTGTACATATGTAAACTTGAGTGCATATGATGGAAATAAACGCCGGTTTTGTACA
>TCONS_00028172
AACTATTACTGAATTACTGAAATATAACTTTCCAGGTGCAAGTATGAGTTCCATCAGAAGACCAAAGAATGCAGAAAACCCGTCTGAAAACATCAAGAAATTCCTGGTAGCGCCAACATCTGGAGCAGGAATGGGGAGGAGGACGCTTCAGGTGCTTCAGCCCTCCGCTGTAAACAAAAACCTCGGTCGTATAATTGAGAATGGTAAAGCAGTGGCCAAAAGGAAGATGTGGAGCGCCGAGCAAGTGAAGGGTTCAAAGAGAGTCAAAGCAGAGGTGGCTGTCAAATCCACAAATGCAGAAAATGAAAACCAGCCTGAGGGGGTCACACAAGAGGCCTATGAGCTCATGATCAAAGAAACTCCTGGTTCCTCCTATTGGAAGGAGGTGGCAGAGGAAAGGAGGAAAGCCTTGTTCAGTGTTCTCCAGGAGAATGAAAAGTTGCATAAAGACATTGAAGCCAAAGACGAACAGATTGCTCAGCTGAAGACTGAGAATGAAGAGTTGCAGGAACTGGCGCAGCATGTACAACACATGGCAGACATGATCGAAAGATTAACTGGAAAAAGTCCAGACAATCTAGAAGAGTTGCGTGAGATTGCCTTTGATGCTGAAGATGAGGAGTTGGAGAATGAAAATGAAGATGAGGAAGAACATGAAGATGAGGATCAGGAGCATGACTGTGAGGGTGAAGCTGATGAAAGTCAAGACACTGAAGAAAACCCAGAATGGTCTATAAAACACAACGATTCTGCAACAGAAGAAAGCTGACATGAGTAGGTGAACTG
>TCONS_00028173
GAAATTCCTGGTAGCGCCAACATCTGGAGCAGGAATGGGGAGGAGGACGCTTCAGGTGCTTCAGCCCTCCGCTGTAAACAAAAACCTCGGTCGTATAATTGAGAATGGTAAAGCAGTGGCCAAAAGGAAGATGTGGAGCGCCGAGCAAGTGAAGGGTTCAAAGAGAGTCAAAGCAGAGGTGGCTGTCAAATCCACAAATGCAGAAAATGAAAACCAGCCTGAGGGGGTCACACAAGAGGCCTATGAGCTCATGATCAAAGGTAACCAGTCAGATGTTTAATTGGACTCATTTGAATGATGGCCCAGTTAATGCCAAATTCATCATTATCCATGTTTCCATCTACCCATTTCTTCTAATTTTGGAACATCTCCATTAAAAGAAAAAgcttaatggaaatgccaagacgTGCATAAATTGAGAAGATAATTAAATTCTCCTCAAAAAGAGTGCATACACTATGGAAACATATTTATCGAATAAATTTCagtataaacataaaaaaggtGTGATAGGATGTCATTTAATGGACAAACTCTTAACCACATTGTGAAACACCTCAAATGTTTGGTCATTTTAGAATACCTTTGGGAAATTGTGTCTCTGTTTGTTACCTCCAGAATTGTCTGGAGCAGCTGCTCTCTCAAAAagatccttaaaaaaaaaaaaaaaaaaggaggaagaAATCAAATgaggtgttttgtttgttttttttttttttttttttttttttttttttttttttttttttttttttttttgtcaagtttgGAGGGACAACTAATTCTATTATAAGAAGTTAGGcccacttttttatttt
>TCONS_00028174
TTCAGAATGGTAAAGCAGTGGCCAAAAGGAAGATGTGGAGCGCCGAGCAAGTGAAGGGTTCAAAGAGAGTCAAAGCAGAGGTGGCTGTCAAATCCACAAATGCAGAAAATGAAAACCAGCCTGAGGGGGTCACACAAGAGGCCTATGAGCTCATGATCAAAGcatcttcctctgcctatTGGGTACTACTGCATGCAGGTGCCTTTGATGGCGCAGAATGTTTAGTCAACATTGTGGGAAGATAACTAGCAAACAtgcagtacagcacttcagagtcacagcTAGCGATCAGATTTTCAAtatggcaagctgaacgcatacTGTACAGGCGACGCAAcgcggaggagattgattgacaatggtctgcAGCCAGTCAGGACGCAGAACAATGCGTTGTAGGAGAAAATGTCAAATTACACGGAAAAATCCACACCACTGTGAGGCTGTGAAAGAAACTCCTGGTTCCTCCTATTGGAAGGAGGTGGCAGAGGAAAGGAGGAAAGCCTTGTTCAGTGTTCTCCAGGAGAATGAAAAGTTGCATAAAGACATTGAAGCCAAAGACGAACAGATTGCTCAGCTGAAGACTGAGAATGAAGAGTTGCAGGAACTGGCGCAGCATGTACAACACATGGCAGACATGATCGAAAGATTAACTGGAAAAAGTCCAGACAATCTAGAAGAGTTGCGTGAGATTGCCTTTGATGCTGAAGATGAGGAGTTGGAGAATGAAAATGAAGATGAGGAAGAACATGAAGATGAGGATCAGGAGCATGACTGTGAGGGTGAAGCTGATGAAAGTCAAGACACT

Function

symbol description
gmnn Acts upstream of or within Kupffer's vesicle development; cilium assembly; and determination of left/right symmetry. Predicted to be active in nucleus. Is expressed in several structures, including Kupffer's vesicle; immature eye; mesoderm; nervous system; and neural tube. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 6. Orthologous to human GMNN (geminin DNA replication inhibitor).

GO:

id name namespace
GO:0008156 negative regulation of DNA replication biological_process
GO:0045786 negative regulation of cell cycle biological_process
GO:0071910 determination of liver left/right asymmetry biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060271 cilium assembly biological_process
GO:0006275 regulation of DNA replication biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-030429-30 Acts upstream of or within Kupffer's vesicle development; cilium assembly; and determination of left/right symmetry. Predicted to be active in nucleus. Is expressed in several structures, including Kupffer's vesicle; immature eye; mesoderm; nervous system; and neural tube. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 6. Orthologous to human GMNN (geminin DNA replication inhibitor).

Ensembl:

ensembl_id ENSDARG00000035957

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028168 False 582 mRNA 0.35 29 31541607 31592425
TCONS_00029962 False 3925 lncRNA 0.32 2 31556045 31561224
TCONS_00028171 False 1031 mRNA 0.43 7 31585341 31590778
TCONS_00028172 False 786 mRNA 0.45 6 31585917 31590565
TCONS_00028173 False 818 lncRNA 0.36 2 31587746 31588650
TCONS_00028174 True 808 nonsense_mediated_decay 0.46 5 31587931 31590491

Neighbor

gene id symbol gene type direction distance location
XLOC_014140 pip4p2 coding upstream 110580 31404686 ~ 31431027 (+)
XLOC_014139 NA coding upstream 193259 31250920 ~ 31348348 (+)
XLOC_014138 NA coding upstream 323508 31157647 ~ 31218099 (+)
XLOC_014137 NA coding upstream 388517 31138827 ~ 31153090 (+)
XLOC_014136 sostdc1b coding upstream 478587 31061718 ~ 31063020 (+)
XLOC_014145 stmn2b coding downstream 178845 31771270 ~ 31790551 (+)
XLOC_014146 NA coding downstream 208080 31800505 ~ 31859540 (+)
XLOC_014147 si:dkeyp-34f6.4 coding downstream 280883 31873308 ~ 31895595 (+)
XLOC_014148 tpd52 coding downstream 312411 31904836 ~ 31939039 (+)
XLOC_014149 NA coding downstream 351083 31943508 ~ 31954728 (+)
XLOC_014133 NA non-coding upstream 571582 30969012 ~ 30970025 (+)
XLOC_014130 NA non-coding upstream 698374 30841639 ~ 30843233 (+)
XLOC_014150 NA non-coding downstream 362534 31954959 ~ 31969766 (+)
XLOC_014151 BX119962.1 non-coding downstream 466052 32058477 ~ 32058599 (+)
XLOC_014158 NA non-coding downstream 1124153 32716578 ~ 32718796 (+)

Expression


Co-expression Network