XLOC_014146


Basic Information

Item Value
gene id XLOC_014146
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31800505 ~ 31859540 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029963
GAGAAAGACAGCGTTGAGTGATCTGATCTGATTATCATTACAGGAAACACACTGTGCAGTTGGTGGATCACAGTGGGAGTGGCTGAGGGCGAAACAGAAATGTCACTAGATAAACAGCAGAGAttataaagcactttacacatctAGTTTGTCCTGTTTGAGTCGTGCAGGAGCTAGTAATTATTTTCACTGTGGGAATTTCCTTGAGCAGATTCCCAAACTTTGGATGATCTAGTAATGCAAAGaAGTCACTTGGTATGGGAAAGCCAGATGCAGAGCCGTCCCACCCTCTTACATGTAGAGAAGATGAATCCATCCAGCTTTTGGTAGTCAACATATCCATGCAGATGTTCTTCTTGGCATCTCATCATGACCGGcttagtccctttagtaatcatGGATCGCCACATCAGattcaaccgccaacttatccagcatatgtttcacgcagtggatggccttcca
>TCONS_00029726
tttgcatgttctccccatattcgcGTGAATTTCCCCCATGCACTGTTGGTGAATTAGTGTATTAGCTGTGTGTGAgcgtgagagtgtatgggtgttttccagtactgggtttccCCATAGTTCaacgacatgtggtacaggtgaattgaataaactaaatttttcgtagtgtgtgtgtatttgtgtgcatgagtgtgtatgggtgtttctcaacactggattgcggctggaagggcatccactgcgcagAACATATACcgtaatagttggcagttcattccactgtggcaacctctgaaatagagactaagaagaagaaaaatgaacgaatgaataatatataCTATTCTAAAGGTAAACCTCAGTTAATCATTAGGAGGAAAATCCTGTGCTTCTCTTAGCATATTGTTGACGAATGTTTGCTTTATTAGCTCTCTTGAGCACGTCTGCTAACGTCACTCCTAGACGTGAAACACACCATATTTTCCTAATGCATATGTTCTTAGATTAATTACATCCTCTGAAGCTACAACTGCTGCGTGCGTTTGGAGCTCAGTCGAACAAAAATCACAGCCCTGATATGTCCCGAAGGTCGGCTGTTGTGATTTCGTCTCCTTTATTGTTGTCTTGGGCTACTGATGTCACTTCCCTCTGCCATAATAAAGGAGTGCAGCCGTTGACCACAGCAGGATCCAGCTGTTCTAGCACATGGTTAAGCTGTGCGGTAATACTCACAAGACACAAGAAAAACAGGGAGGAGATCGCTGGAGTTCAGCGCATACACTCTGTCACCGTGTCTATAaAGTCACTTGGTATGGGAAAGCCAGATGCAGAGCCGTCCCACCCTCTTACATGTAGAGAAGATGAATCCATCCAGCTTTTGGTAGTCAACATATCCATGCAGATGTTCTTCTTGGCATCTCATCATGACCGGGTGAGTCTCAAAACCCTGGTGAGAACTTCCTCTGTGGGACACTGCAGTGAGAAAGCTGGGAACGGAGACCGTAGAACGTGTGAATGAGACAGGAAGGATAAAAACTGAAATTCTGTACCAATACCAGGTTGGCATGATGATCTTTGACCTTCAATTGTTTTAGAAGATTGATATCTGATTGCTGTGGTGCTAGACCAGGCAAATCCATTGTGGATTTATGCATAGTCTTTAGGGGTCCAATTAccgaaaaaaaaaagctgaggtAACgttttacttgaaggggtgttcataaggcTGTCTTTGTTaacttgataataataaaatatatcattaaCTGCCTTTGCCATGagaacttgacattaccaagacaatatgtaataaattgtaataagtTGTAATAATGTAACAAACTTgtaataaatctgtcataaacatgactaccccaggctcattctgaaaatataccCCATAATCATTTCTGGAGTCCGCCAGATGCATCCCAGGAGCTAagtgttttgcagtttttatttttacgaatccaccagacgccactgtgtacactttttgagatctcaaatgtaTCTCACGAGTGCCACTTGCGCCTGCTGTCTTCGCTTAAAttcatcagaggccgctgttgactgattgtttgactgactgattgacttaCCGATCGACTAACCCACCcccctccttccttaaacccaaccaatagtatttatGTAGTAACCAATagtaaaaagcacagattgacccgcccaccgacttcccaaaacccaaccaagaaatttaaaaagcaatccagaaacagaaaagcccttgcctgatttttaccacgttttaccacattctcaccctgttatttacttgttttgttttttttggcttttgtttttgtcttacccatttTCTGAAACCATTTGTGGTCATCTCCTTTCTGCGTGTCATGTccacatggcgagctaactgggacgataaccgttttcaaggtatactgtggtttgaaaaagtcaagatttaaaaaccgccaaaattttctgtaacacCGTTCCTATGgtatgtgtaatatttttttgctgttttttaggacaacagtatgtccagcagaaaagatatccaaagatgtcattttaaactgtgttttttaaacaaatcaag

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029963 False 465 lncRNA 0.44 3 31800505 31859540
TCONS_00029726 True 2092 lncRNA 0.41 2 31824839 31827192

Neighbor

gene id symbol gene type direction distance location
XLOC_014145 stmn2b coding upstream 9954 31771270 ~ 31790551 (+)
XLOC_014142 gmnn coding upstream 208080 31541607 ~ 31592425 (+)
XLOC_014144 BX957279.1 coding upstream 208965 31591524 ~ 31591540 (+)
XLOC_014143 acot13 coding upstream 221122 31576849 ~ 31579383 (+)
XLOC_014141 tmem64 coding upstream 246987 31532043 ~ 31553518 (+)
XLOC_014147 si:dkeyp-34f6.4 coding downstream 13768 31873308 ~ 31895595 (+)
XLOC_014148 tpd52 coding downstream 45296 31904836 ~ 31939039 (+)
XLOC_014149 NA coding downstream 83968 31943508 ~ 31954728 (+)
XLOC_014150 NA coding downstream 95419 31954959 ~ 31969766 (+)
XLOC_014151 BX119962.1 coding downstream 198937 32058477 ~ 32058599 (+)
XLOC_014139 NA non-coding upstream 452157 31250920 ~ 31348348 (+)
XLOC_014138 NA non-coding upstream 582406 31157647 ~ 31218099 (+)
XLOC_014137 NA non-coding upstream 647415 31138827 ~ 31153090 (+)
XLOC_014133 NA non-coding upstream 830480 30969012 ~ 30970025 (+)
XLOC_014158 NA non-coding downstream 857038 32716578 ~ 32718796 (+)
XLOC_014159 NA non-coding downstream 905743 32765283 ~ 32780918 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07582152_07584554 NA coding CI01000054 null 7581980 ~ 7584692 (+)