XLOC_014148 (tpd52)


Basic Information

Item Value
gene id XLOC_014148
gene name tpd52
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31904836 ~ 31939039 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028179
AGGTGGGACAGCGTGCCCTTCTCTCGCTCTGTTTACATATTTACGTACTGTGCgtgctgacgtcacagacgaCCCCACCCCATCTCGCGCAGCAGCCCAGGGTTGCAGTGGCAGCTTTGAGCTGAATTTTGAGAGGTTGAAGTGGGAACGCGGGACCGCAAGAATCAGAATAACTCACAACATCAAGAGTCCTCAAAGACAGGATGGAGGAGAACGATAAAGGGACCCAAAGGCCAGACTTCATCCAAGAAGTAGGTGAAGAAGCAGTGGATGCAGCACCATGTTCACCCTGCACTGTCCTAACTGAGCAGGAGCAAGCAGAGCTCCACAGCGAACTTCAAAAGGTGGAAGAAGAAATCCAGACTCTTTCCCAGGTGCTTGCGGCCAAGGAGAAGCAGGTGGCGGAGATCAAGCGGAAGCTGGGCATCACTCCACTCAACGAGCTCAAACAGAACCTGAGCAAGGGCTGGCATGATGTCACCACCTCCACTGCGTATAAGAAGACCTCAGAGACCTTGTCCCAAGTAGGTCAAAAGGCGACAACAGCATTTTCCAGCGTAGGAACAGCCATCACCAGAAAGCTGGAGGATGTGAGATTACAGTCATTTTCCAATTCTTTTGGTATACGCTCTATACAGCACTCGGCTAGCATGCCGGTCATGAGGAACACACCCTCCTTCAAGTCATTTGAGGAGAAAGTGGAAACCTTAAAGACTAAGATGAGCCCCAAACCATCGACAAGCGATATTGAAGAGGTTTCAGACTCCACACCTGATGGAGAGCCCATGATTAAACAACCAGACGACACGTTTTCACCAGATCAGCAACCGCACTGA
>TCONS_00028180
ACCCCATCTCGCGCAGCAGCCCAGGGTTGCAGTGGCAGCTTTGAGCTGAATTTTGAGAGGTTGAAGTGGGAACGCGGGACCGCAAGAATCAGAATAACTCACAACATCAAGAGTCCTCAAAGACAGGATGGAGGAGAACGATAAAGGGACCCAAAGGCCAGACTTCATCCAAGAAGTAGGTGAAGAAGCAGTGGATGCAGCACCATGTTCACCCTGCACTGTCCTAACTGAGCAGGAGCAAGCAGAGCTCCACAGCGAACTTCAAAAGGTGGAAGAAGAAATCCAGACTCTTTCCCAGGTGCTTGCGGCCAAGGAGAAGCAGGTGGCGGAGATCAAGCGGAAGCTGGGCATCACTCCACTCAACGAGCTCAAACAGAACCTGAGCAAGGGCTGGCATGATGTCACCACCTCCACTGCGTATAAGAAGACCTCAGAGACCTTGTCCCAAGTAGGTCAAAAGGCGACAACAGCATTTTCCAGCGTAGGAACAGCCATCACCAGAAAGCTGGAGGATGTGAGGAACACACCCTCCTTCAAGTCATTTGAGGAGAAAGTGGAAACCTTAAAGACTAAGATGAGCCCCAAACCATCGACAAGCGATATTGAAGAGGTTTCAGACTCCACACCTGATGGAGAGCCCATGATTAAACAACCAGACGACACGTTTTCACCAGATCAGCAACCGCACTGAGAATCAGCCCTCAAACTCTTCTCTTTTTCCACTTTTCTTTTGGTACTTCAGCATAGTCACAGTGAGTTTGCTTCTGTATAACTGGAGTCTCAGTGATCTCCAGATGGGACGGGGTAGTCCTACACTGGAACAGACACGTCAAAATGTCATTACTGTAAGAGCATGTTACTAGTTCCGTTTTCATCCATAACTTCAGTGCCATTgaattagccaaaataaaaagactttaaatg
>TCONS_00028181
GCAGCCCAGGGTTGCAGTGGCAGCTTTGAGCTGAATTTTGAGAGGTTGAAGTGGGAACGCGGGACCGCAAGAATCAGAATAACTCACAACATCAAGAGTCCTCAAAGACAGGATGGAGGAGAACGATAAAGGGACCCAAAGGCCAGACTTCATCCAAGAAGTAGGTGAAGAAGCAGTGGATGCAGCACCATGTTCACCCTGCACTGTCCTAACTGAGCAGGAGCAAGCAGAGCTCCACAGCGAACTTCAAAAGGTGGAAGAAGAAATCCAGACTCTTTCCCAGGTGCTTGCGGCCAAGGAGAAGCAGGTGGCGGAGATCAAGCGGAAGCTGGGCATCACTCCACTCAACGAGCTCAAACAGAACCTGAGCAAGGGCTGGCATGATGTCACCACCTCCACTGCGTATAAGAAGACCTCAGAGACCTTGTCCCAAGTAGGTCAAAAGGCGACAACAGCATTTTCCAGCGTAGGAACAGCCATCACCAGAAAGCTGGAGGATGTGAGATTACAGTCATTTTCCAATTCTTTTGGGAACACACCCTCCTTCAAGTCATTTGAGGAGAAAGTGGAAACCTTAAAGACTAAGATGAGCCCCAAACCATCGACAAGCGATATTGAAGAGGTTTCAGACTCCACACCTGATGGAGAGCCCATGATTAAACAACCAGACGACACGTTTTCACCAGATCAGCAACCGCACTGAGAATCAGCCCTCAAACTCTTCTCTTTTTCCACTTTTCTTTTGGTACTTCAGCATAGTCACAGTGAGTTTGCTTCTGTATAACTGGAGTCTCAGTGATCTCCAGATGGGACGGGGTAGTCCTACACTGGAACAGACACGTCAAAATGTCATT
>TCONS_00028182
AGAATAACTCACAACATCAAGAGTCCTCAAAGACAGGATGGAGGAGAACGATAAAGGGACCCAAAGGCCAGACTTCATCCAAGAAGTAGGTGAAGAAGCAGTGGATGCAGCACCATGTTCACCCTGCACTGTCCTAACTGAGCAGGAGCAAGCAGAGCTCCACAGCGAACTTCAAAAGGTGGAAGAAGAAATCCAGACTCTTTCCCAGGTGCTTGCGGCCAAGGAGAAGCAGGTGGCGGAGATCAAGCGGAAGCTGGGCATCACTCCACTCAACGAGCTCAAACAGAACCTGAGCAAGGGCTGGCATGATGTCACCACCTCCACTGCGTATAAGAAGACCTCAGAGACCTTGTCCCAAGTAGGTCAAAAGGCGACAACAGCATTTTCCAGCGTAGGAACAGCCATCACCAGAAAGCTGGAGGATGTGAGTATACGCTCTATACAGCACTCGGCTAGCATGCCGGTCATGAGGAACACACCCTCCTTCAAGTCATTTGAGGAGAAAGTGGAAACCTTAAAGACTAAGATGAGCCCCAAACCATCGACAAGCGATATTGAAGAGGTTTCAGACTCCACACCTGATGGAGAGCCCATGATTAAACAACCAGACGACACGTTTTCACCAGATCAGCAACCGCACTGAGAATCAGCCCTCAAACTCTTCTCTTTTTCCACTTTTCTTTTGGTACTTCAGCATAGTCACAGTGAGTTTGCTTCTGTATAACTGGAGTCTCAGTGATCTCCAGATGGGACGGGGTAGTCCTACACTGGAACAGACACGTCAAAATGTCATTACTGTAAGAGCATGTTACTAGTTCCGTTTTCATCCATAACTTCAGTGCCATTgaattagccaaaataaaaagactttaaatgtctgtttgt

Function

symbol description
tpd52 Predicted to be involved in B cell differentiation. Predicted to be active in cytoplasm. Orthologous to human TPD52 (tumor protein D52).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-680 Predicted to be involved in B cell differentiation. Predicted to be active in cytoplasm. Orthologous to human TPD52 (tumor protein D52).

Ensembl:

ensembl_id ENSDARG00000061713

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028179 False 836 mRNA 0.51 8 31904836 31938797
TCONS_00028180 False 924 mRNA 0.48 6 31904912 31939030
TCONS_00028181 False 854 mRNA 0.49 7 31904927 31938948
TCONS_00028182 True 885 mRNA 0.47 7 31905002 31939039

Neighbor

gene id symbol gene type direction distance location
XLOC_014147 si:dkeyp-34f6.4 coding upstream 9241 31873308 ~ 31895595 (+)
XLOC_014146 NA coding upstream 45296 31800505 ~ 31859540 (+)
XLOC_014145 stmn2b coding upstream 114285 31771270 ~ 31790551 (+)
XLOC_014142 gmnn coding upstream 312411 31541607 ~ 31592425 (+)
XLOC_014149 NA coding downstream 4469 31943508 ~ 31954728 (+)
XLOC_014150 NA coding downstream 15920 31954959 ~ 31969766 (+)
XLOC_014151 BX119962.1 coding downstream 119438 32058477 ~ 32058599 (+)
XLOC_014152 mrpl53 coding downstream 218971 32158010 ~ 32164532 (+)
XLOC_014153 fabp11a coding downstream 227663 32166702 ~ 32169161 (+)
XLOC_014144 BX957279.1 non-coding upstream 313296 31591524 ~ 31591540 (+)
XLOC_014139 NA non-coding upstream 556488 31250920 ~ 31348348 (+)
XLOC_014138 NA non-coding upstream 686737 31157647 ~ 31218099 (+)
XLOC_014137 NA non-coding upstream 751746 31138827 ~ 31153090 (+)
XLOC_014158 NA non-coding downstream 777539 32716578 ~ 32718796 (+)
XLOC_014159 NA non-coding downstream 826244 32765283 ~ 32780918 (+)

Expression


Co-expression Network