XLOC_014150


Basic Information

Item Value
gene id XLOC_014150
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31954959 ~ 31969766 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029968
atttaatcaagcttaagtacacagtaaatacatgtatttacatatttacatgtatttacaatacattgtaacaaactattaattactgtgtaagtacatattaataaaggccacaatataaagtaggaccaaaacttcagtattgattggtaccgAATTACAGTATCTTGACATCCCTAATGTGGGTGTAAACAAAGCCATGCTCCATTCCACCAATAAAACCAAGTGTTAATCTAGACGTAACATATTTAGTTTTGGAGAAGTTAATACCTTTAGTTTATATACACATATCAACAACTAAGGTAAAGGGAAACCATGTGATGAAAAAACAGAAATGGACAATGAGCTTGTCACCGTAAGCACTGCTTGCATGTATATAATGAGTACTTGTGTCGATGTATCATATATTAGACTGTTTCAGAGCCACCAAAACATTGCCAGATAACAATTACCAATCGAGCTGCCATATTCCAAATCTGGTCATCCTTTGCAATCACCAAAAATGTCCATCCTCCTGTGACCAGCGATCTGTGGTCTTACACGATACCATACCCACTACAGCAGAACAACATCGCCCCATCTGAGCGCTTCCACTGAAGTCGGTGTGgcatttgctatttttattacTTCCTACTTGAACCTGTGAGGTCAGGAAAAGGGTGAGAGGAAAAGAGCTCTTCACCTTTCAGAGGTAAAATTAACCACTTTGCAGAGTTTTCATACTCGTTGCTCAGGCATGTTGGTCGAACCTCTCTAGGCATCAAACTGTGGTGTGAAACCACCGCGGGTTCATTTATGGCTCTAATGTGTATGCAGTTCATTCCTGCTGATGGAGTCCGATGGGAAGGAAAGGTTGCACTGCCTGAATGGCTGGTTCTTGGAACCGCTAACTTCGATGCGAGTCTGTGCCATTGGGCTATAATGAGCGCAGTCCTTTCACTTCACTCTATTGAAGTCAGTTACAcacaaagcaaaagaaaaaaaggaaatggCACgtgaaaaaaaatcctttttggTAGCAAGAAGATAATCCTGTGACAAAAAAAGCACTGAGTTCTCTGCTATTAAATCTAACTGCTGGTTTTGCTTTTACTGATCGCATCCCTGAAAGAAATGTCCTGTTGGTAAACGCAAATATAAAACCAGACATATAAAATCCGTCCTTTGTAGGTGCAATTGCTTGTGAGCTGAAAGTCCTTTTCTTcccatacgttttttttttttttttgcattgatgaATTCCCATTCAGGGGAGCCGTCCAGTGAACATCCCTAAACAAACCCCTGTGGTGGTACATTCTTAAGAAGACAGAGTTTTTTTGGCTGTCCAGCCCTTAACCTTTAGTAAAACGGGCAGGAGAAATGCAAAAAAGTGCCCGTGGAAAAAGAAACACTTTCTGTTTTATAGCACTCTCACAGTCTGAAAGAGAGCTTtcttctcttttaaaaaaaagagctCAGACTGAGGCTGGACTTGCCCTCACTGGTCCTCTAGGAACTGACCAGAATGTTTCTTAAGCAGTATATCGaacacagacaaaaacagatgAATCAAAAGtcttttttcctcttcttttttgcagtgtaaagcAACTCGTCTCAATGGGAGAGTTGGGAATCTTCAAAGATTGAGAAGTCCATTTGGGAAGGAATGCATAAGGGTTTGATCCCAGGAGTCCACGTGGGTTTAAGGTTGCCTTACCCAAGATGGACGGTTCGAATGTGCCTCTGGATCCCGGCAGCTGTGCTCAAGACCTTCCCACAATTCTTCCACAGACACTTGAACATCACCTTCATGGAGTTCTGTCAGGGACACAGGTGCACAGTGAGTACCCTAATCCACATCAACTGGCAGACCTCTTGTCCTCAGCATTCAAAAACCCACAAAAGACTGACACAGGGGGAGCCCGGAGCCTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029968 True 1919 lncRNA 0.41 2 31954959 31969766

Neighbor

gene id symbol gene type direction distance location
XLOC_014149 NA coding upstream 231 31943508 ~ 31954728 (+)
XLOC_014148 tpd52 coding upstream 15920 31904836 ~ 31939039 (+)
XLOC_014147 si:dkeyp-34f6.4 coding upstream 59364 31873308 ~ 31895595 (+)
XLOC_014146 NA coding upstream 95419 31800505 ~ 31859540 (+)
XLOC_014145 stmn2b coding upstream 164408 31771270 ~ 31790551 (+)
XLOC_014151 BX119962.1 coding downstream 88711 32058477 ~ 32058599 (+)
XLOC_014152 mrpl53 coding downstream 188244 32158010 ~ 32164532 (+)
XLOC_014153 fabp11a coding downstream 196936 32166702 ~ 32169161 (+)
XLOC_014154 fam8a1a coding downstream 232225 32201991 ~ 32206819 (+)
XLOC_014155 atxn1a coding downstream 287706 32257472 ~ 32461596 (+)
XLOC_014144 BX957279.1 non-coding upstream 363419 31591524 ~ 31591540 (+)
XLOC_014139 NA non-coding upstream 606611 31250920 ~ 31348348 (+)
XLOC_014138 NA non-coding upstream 736860 31157647 ~ 31218099 (+)
XLOC_014158 NA non-coding downstream 746812 32716578 ~ 32718796 (+)
XLOC_014159 NA non-coding downstream 795517 32765283 ~ 32780918 (+)
XLOC_014169 NA non-coding downstream 1825982 33795748 ~ 33798410 (+)
XLOC_014171 dre-mir-187 non-coding downstream 2165841 34135607 ~ 34135695 (+)

Expression


Co-expression Network