XLOC_014156 (heyl)


Basic Information

Item Value
gene id XLOC_014156
gene name heyl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32553874 ~ 32560591 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028191
AAATCGCTCCATCGATTGAACAGGAGGACTGAGGAACCTGTGGAGATGAAGAGACCTCATGACTACAGTTCTCCAGACTCAGACACGGATGAACTCATCGATGTCGGACAGGAGGACAGCTACTGCCCTGTCACTGGGTCCATGTCTCCAGGCAGTACCTCACAGATCCTGGCGCGCAAGAAGAGAAGAGGGATAATTGAGAAGAGGCGCAGGGACAGGATCAACCACAGCCTGTCAGAGCTCAGGAGACTCGTACCCAGTGCCTTCGAGAAGCAGGGTTCCTCTAAACTAGAGAAGGCTGAGATCCTGCAGATGACAGTGGATCATCTCAAACTGCTGCATGCCATGGGTGGCAAAGGCTACTTTGATGCCCGTGCTCTGGCAGTGGACTACAGGACTTTAGGCTTCCGGGAGTGTGTTGGAGAAGTGGTGCGATACCTCAGCTCTTTGGAGGGCGTTGAATCATCAGACCCCATCGGTGCGCGCCTCGTGTCCCACCTTAGCCACTGCGCCAGTGAGCTGGATCCTCTCCTCCAGAGTCCCGCTGCTCTGCCATTCCCTCCCTGGCCTTGGGCATCCTTTCCTCAGCTGCAAGCTGCATCGCCTCCAGCCTCGTCCACTCCATTTCCCCCGAACGCCCGCCGGGATCTGGCTCCACATGGGACGGCCACCATTCTGGGCTACCCTTCGCCAGCCCTCCGAATGGGATCATTGAGCACCCAGGGGACAATACTGAACCCAGCGCTGACCTCCGTGCGTCAATTGCCGTCCGTTCCGGGACAtcttcacagacttcaacagcaTTCCCCTGAGGGGCGCACAGTCCCATCATCTTCCTCGTCTTCCTCCAACTCTTCACCTCCACAGATTTCCTTCAGACCCTTCGTGCCTGCTGGGTCTCCAGCTGGAGGTCGCAGGGCTTTGAGTTCCTCCAGTAAATCTGCACAGGCCTGGGGCACAGAGATAGGGGCATTTTGAAGAACCTCAGGTTTGGAGTTTGGGACACTCTGGAAGCAAAAAGTACATTTCTTTGTCACTTGGACTTAATTAGCACCATTAAATGCTAATGATTTCCTGTAGCTCAAGTGATAGAGGATGTCGCTTGCAACAGCAAGGTTGTGGGTTCGATACCCTAGGACTGTAAGGCGTGATAAATGTGTACCTTCAATGCAATGTAAGTCCCTTCAGATGCATAAATATGAAAGGGAATAGCAAAGAATTGCAAAGCTCAGATTGAAATTTTTATTGAATTCCTTTTACTATTCCAACTTAAATGGCATTTACAGAtatgaaaatgtaataaaaaataaagtctgtttACATTAACAGGAAAAAATAGAAGGGAAATCAAGTAAAAAGTGTCAAATCGATACATTAAAGGTGAATGTGACTCTCAGAGACACCGGATGATTAAAGATTGGCTGACAGCCATTCATTGCTAAGAACTTGGATTTTAGCATCCAGGTACTGGAACTTTCTAGAACTCTGATCTTTTTATATTACGTGTATTTGTTTACTCTGTCATTTATGCATTAACTTGGAATCTGATATGATATATCAAACATTTGAGATTGAAGTGCTTGAGGAGATTATATAAAGAGAGATGTGCCTTATCAAAA

Function

symbol description
heyl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within Notch signaling pathway and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epidermis; nervous system; neural rod; neural tube; and tail bud. Orthologous to human HEYL (hes related family bHLH transcription factor with YRPW motif like).

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7074 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within Notch signaling pathway and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epidermis; nervous system; neural rod; neural tube; and tail bud. Orthologous to human HEYL (hes related family bHLH transcription factor with YRPW motif like).

Ensembl:

ensembl_id ENSDARG00000055798

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028191 True 1619 mRNA 0.48 5 32553874 32560591

Neighbor

gene id symbol gene type direction distance location
XLOC_014155 atxn1a coding upstream 92278 32257472 ~ 32461596 (+)
XLOC_014154 fam8a1a coding upstream 347055 32201991 ~ 32206819 (+)
XLOC_014153 fabp11a coding upstream 384713 32166702 ~ 32169161 (+)
XLOC_014152 mrpl53 coding upstream 389342 32158010 ~ 32164532 (+)
XLOC_014151 BX119962.1 coding upstream 495275 32058477 ~ 32058599 (+)
XLOC_014157 tmem54b coding downstream 43036 32603627 ~ 32619257 (+)
XLOC_014158 NA coding downstream 155987 32716578 ~ 32718796 (+)
XLOC_014159 NA coding downstream 204692 32765283 ~ 32780918 (+)
XLOC_014160 stk3 coding downstream 246645 32807236 ~ 32820107 (+)
XLOC_014161 rida coding downstream 261678 32822269 ~ 32884513 (+)
XLOC_014150 NA non-coding upstream 584108 31954959 ~ 31969766 (+)
XLOC_014149 NA non-coding upstream 599146 31943508 ~ 31954728 (+)
XLOC_014146 NA non-coding upstream 694334 31800505 ~ 31859540 (+)
XLOC_014144 BX957279.1 non-coding upstream 962334 31591524 ~ 31591540 (+)
XLOC_014169 NA non-coding downstream 1235157 33795748 ~ 33798410 (+)
XLOC_014171 dre-mir-187 non-coding downstream 1575016 34135607 ~ 34135695 (+)
XLOC_014173 BX649545.1 non-coding downstream 1646571 34207162 ~ 34207280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G293172 NA non-coding NW_019172820.1 APWO02000028.1 710648 ~ 772153 (+)