XLOC_014158


Basic Information

Item Value
gene id XLOC_014158
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32716578 ~ 32718796 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029970
caagACTTCcaagacttccctctccccagacacttcctccagctcctccaggggggatcccgaggcgtttccaggccagccgagaggaatagtccctccagcatgtcctgggtcttccccgaggcctcctcccggtgggacatgatggaatacctccctaggtaggcgtccaggaggcatccaaaacaggtGCCCTAGCCacttcagctgacttctctcgatgtggaagaGAAGCGggtctactccgagctcctcctgaatgtcagagctcctcaccctatccataagagtatGCCCTGCCACCGTTCGAatgccgcttgtatccgagatcttgtcctttcggtcatgacccaaagctcatgaccataggtgagagtaggaacgtagattgaccggtaaatcgtaAGCTtagcctttcggctcagctccttctttacaacaatggaccggtacatcaaccgcattactgctgctgctgcaccaatccgcctatcaatctcacattccatccttccctcactcgtaaaCAAAACCCGGGGATACTTGAACTTCTCCACCtgagGGCATTTGAAAAATACTGGACTCAAAAGGGCTCAAGAATTTCAGAACACAAAAGGCAGAACTTCACTGAAGATATGCCAAGAACAAAGCCTGCAGACTTCTTCCACATATTCGAGCAAGACTATTGAAGGGAATATTCTGTGGCATGGATTGAAACATGCAATGCCTTCCTTCATCTCAAACAGTGATGTTTGACACAGCAATACTAAGGTTCAGTGGGTCTGAGGGATGTATTAACCAATAAAATCTATATCCTGAATCCGGCAAACAGCAGCGCTGGATAAAAATATAGGTTTTctgttcattaaaataaaaaagtatttatatataAGAAGTGCAGCTAGTGTAGCCTAATTACCAAAACAAATGATTCTTGTGATTTGGTTCTTTTATTGAGAGTTTAAAATAACCTAGTTAAAGATCTGAATCAGTTTGAAGTCCTGTAATGAACTGCTTCAGTTAAACAAGCAAAATGAACTCTAAATATAcccaaataaaaaacaatcagCTTACTGTgaagatatatttatataaaatactttatatAAGTATAAAGTATTCATATTTGcagcaaacacataaaaaattcaGATATATGATGTGAGAGTACACAGTCTGTGATTCACAAATAACTTAaagttaaaaataacaaataaataaacctgcATAAACTGGCTTTGGTCTTTTCTTAAATTTACTGGAGCTTCTGGCTGGTCATACAATCTATATGACAACATATCTATATGACAGATGAAGGTACTTAGCCAAACACAGACATCTTGtacactaaaaatatatatataatttatatacaaATTCTTTTAAGGTaggtggttgcaaactatttatatggg

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0090085 regulation of protein deubiquitination biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0097124 cyclin A2-CDK2 complex cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029970 True 1415 lncRNA 0.41 2 32716578 32718796

Neighbor

gene id symbol gene type direction distance location
XLOC_014157 tmem54b coding upstream 97321 32603627 ~ 32619257 (+)
XLOC_014156 heyl coding upstream 155987 32553874 ~ 32560591 (+)
XLOC_014155 atxn1a coding upstream 254982 32257472 ~ 32461596 (+)
XLOC_014154 fam8a1a coding upstream 509759 32201991 ~ 32206819 (+)
XLOC_014153 fabp11a coding upstream 547417 32166702 ~ 32169161 (+)
XLOC_014159 NA coding downstream 46487 32765283 ~ 32780918 (+)
XLOC_014160 stk3 coding downstream 88440 32807236 ~ 32820107 (+)
XLOC_014161 rida coding downstream 103473 32822269 ~ 32884513 (+)
XLOC_014162 rpl30 coding downstream 136343 32855139 ~ 32860780 (+)
XLOC_014163 atp6v1c1b coding downstream 229114 32947910 ~ 32966762 (+)
XLOC_014151 BX119962.1 non-coding upstream 657979 32058477 ~ 32058599 (+)
XLOC_014150 NA non-coding upstream 746812 31954959 ~ 31969766 (+)
XLOC_014149 NA non-coding upstream 761850 31943508 ~ 31954728 (+)
XLOC_014146 NA non-coding upstream 857038 31800505 ~ 31859540 (+)
XLOC_014144 BX957279.1 non-coding upstream 1125038 31591524 ~ 31591540 (+)
XLOC_014169 NA non-coding downstream 1076952 33795748 ~ 33798410 (+)
XLOC_014171 dre-mir-187 non-coding downstream 1416811 34135607 ~ 34135695 (+)
XLOC_014173 BX649545.1 non-coding downstream 1488366 34207162 ~ 34207280 (+)
XLOC_014176 NA non-coding downstream 1561968 34280764 ~ 34281978 (+)

Expression


Co-expression Network