Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_014162 |
| gene name | rpl30 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 32855139 ~ 32860780 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| rpl30 | Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; female organism; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in herpes simplex. Orthologous to human RPL30 (ribosomal protein L30). |
| id | name | namespace |
|---|---|---|
| GO:0022625 | cytosolic large ribosomal subunit | cellular_component |
| GO:0005840 | ribosome | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-8657 | Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; female organism; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in herpes simplex. Orthologous to human RPL30 (ribosomal protein L30). |
| ensembl_id | ENSDARG00000035871 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00028198 | False | 652 | mRNA | 0.46 | 5 | 32855139 | 32860780 |
| TCONS_00028199 | True | 529 | mRNA | 0.45 | 4 | 32856907 | 32860731 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_014160 | stk3 | coding | upstream | 35032 | 32807236 ~ 32820107 (+) |
| XLOC_014159 | NA | coding | upstream | 74221 | 32765283 ~ 32780918 (+) |
| XLOC_014158 | NA | coding | upstream | 136343 | 32716578 ~ 32718796 (+) |
| XLOC_014157 | tmem54b | coding | upstream | 235882 | 32603627 ~ 32619257 (+) |
| XLOC_014156 | heyl | coding | upstream | 294548 | 32553874 ~ 32560591 (+) |
| XLOC_014163 | atp6v1c1b | coding | downstream | 87130 | 32947910 ~ 32966762 (+) |
| XLOC_014164 | spire1a | coding | downstream | 118352 | 32979132 ~ 33072157 (+) |
| XLOC_014165 | fam91a1 | coding | downstream | 232615 | 33093395 ~ 33137720 (+) |
| XLOC_014166 | lratd2 | coding | downstream | 278384 | 33139164 ~ 33140403 (+) |
| XLOC_014167 | triqk | coding | downstream | 603908 | 33464688 ~ 33515742 (+) |
| XLOC_014151 | BX119962.1 | non-coding | upstream | 796540 | 32058477 ~ 32058599 (+) |
| XLOC_014150 | NA | non-coding | upstream | 885373 | 31954959 ~ 31969766 (+) |
| XLOC_014149 | NA | non-coding | upstream | 900411 | 31943508 ~ 31954728 (+) |
| XLOC_014169 | NA | non-coding | downstream | 934968 | 33795748 ~ 33798410 (+) |
| XLOC_014171 | dre-mir-187 | non-coding | downstream | 1274827 | 34135607 ~ 34135695 (+) |
| XLOC_014173 | BX649545.1 | non-coding | downstream | 1346382 | 34207162 ~ 34207280 (+) |
| XLOC_014176 | NA | non-coding | downstream | 1419984 | 34280764 ~ 34281978 (+) |
| XLOC_014178 | NA | non-coding | downstream | 1840897 | 34701677 ~ 34738365 (+) |
