XLOC_014176


Basic Information

Item Value
gene id XLOC_014176
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34280764 ~ 34281978 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029976
gaatcaaatgctcaaacagacatcgcaaatgataaatcaaatgcaaatgaggtgtCAATCAACCAGCATAGGCGGAGCTTTAAGGCGGAAGAGTTTGTTGTTGACAACAACCGGTAGCGCTACGACTTTTTCAAGGCGTTCAGATTTGCGTGCACTATTCCACGTCGTATCCATATAAACTCGTGAAAGAGAAAGCGAGAAATCTCCTAATGCTTCTGTCCACATTCTGAAGTGTTCATCAGATGGGTACATCTATCACAGGAGGCCACGAAAAACCATACGATAACCAAGATGATAAAAAAGTTACATAACTGACGTTACAAGCGCAACTTTAAATAAATGGTAGgtttattaaattgttaatttaaaataatattttattacataagaTATCCTTGTCAAATGTAACCTAATTTGTTGTTACCTTTATTGTGTAACTTTTTTATTCACATGTAGAACATGCTTAAAGTTAGTTTTCCAGTCTTGTTTgattatataatcatatattcttatatcaaaagaaaatctattacatttgttctctttttgcTGTTTATGTTAATTGTTAAGATACAGCAATGTTTCCCTAAGCCTGTATGAAATTTTTATTTCtgcataataatgattaataataattgttattgataACAATcccataataatacaaataaaatagcatGGACAGAAGCAATAACACCTAATAGCATCATTAACTTGATAACCCTACCTGATAGCCTTTCTAATGTTGGCACATTGGTACATCTGCACAAAGATGTCGGACAGCTGCTTGAAGATCTTCCTTTGGAGAAATTTTACACTCGAAAAATGTGAGTATTTACTCTAGACTGCAAAGCCCACCCCAAcacttacaaaaataataaatgctgctcacaaacaaacacacacacacacacacacacacacaccacagctaTGCATGAATAGTCACTAGACAAATGTAGCCAAGGTGAGTACATCTTAATTTCCagtcaaaaaatgaaataatgtagttatacattattgaaattattaatgtattcatcaacaattaaagaaaatatgaatgtatgattaaaagaattaataatagtaaccatgataaataaatacaagtcaaCAAGATACGAAACTAAGCTTTATTCAAACTTATTCAAACAATCATGTATTTCAGACAAAACCCCATGTTCTGCTGCATGCTGGACTTCTGGACTTCAC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0014028 notochord formation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0048368 lateral mesoderm development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029976 True 1215 lncRNA 0.33 1 34280764 34281978

Neighbor

gene id symbol gene type direction distance location
XLOC_014175 si:ch211-9n13.3 coding upstream 1591 34274504 ~ 34279173 (+)
XLOC_014174 galnt12 coding upstream 21098 34230108 ~ 34259666 (+)
XLOC_014172 poc1bl coding upstream 62608 34169055 ~ 34218156 (+)
XLOC_014173 BX649545.1 coding upstream 73484 34207162 ~ 34207280 (+)
XLOC_014171 dre-mir-187 coding upstream 145069 34135607 ~ 34135695 (+)
XLOC_014177 gabbr2 coding downstream 29396 34311374 ~ 34679738 (+)
XLOC_014178 NA coding downstream 419699 34701677 ~ 34738365 (+)
XLOC_014179 abitram coding downstream 460728 34742706 ~ 34746878 (+)
XLOC_014180 NA coding downstream 467060 34749038 ~ 34751777 (+)
XLOC_014181 NA coding downstream 605597 34887575 ~ 34914799 (+)
XLOC_014169 NA non-coding upstream 482354 33795748 ~ 33798410 (+)
XLOC_014159 NA non-coding upstream 1499846 32765283 ~ 32780918 (+)
XLOC_014158 NA non-coding upstream 1561968 32716578 ~ 32718796 (+)
XLOC_014185 NA non-coding downstream 1079502 35361480 ~ 35363590 (+)
XLOC_014186 CR753876.1 non-coding downstream 1086624 35368602 ~ 35369837 (+)

Expression


Co-expression Network