XLOC_014180


Basic Information

Item Value
gene id XLOC_014180
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34749038 ~ 34751777 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029978
ATTTAGactttgttttctgatttaacAATCATTCAAATGGTCCAACACTAATACAATGGGAAGTCATAGCTGCACAATCATCTCTAAAGCTTATGGTTTATTAATCAGAGAAACAGGATCAACTAGAATTAATGTGTGAATGGAAACCCATTGCTGAAGAGCCTTTTTATCTGCGTCCTACTAAAATGTTGCTCTTCGATGCACTACAGCCTAAACTATTGATTGACTGTACATACCGTCTTCACTCTAACCTTTTAGGTTAATGTACCAAAGTCTTACATTGTTAGGACAGAAGTAAAAATACAAATCACAGTGACCTACAAGGCAGTCAATACTATTACAAGGCTGTCGCTCCTATGACAATACACTTATTTAGAAAGTTTCCCAAAAATGACACTTCGCattgtttcaaacctgtatggTCTTCAGCATTGACTCTTATggtgtggagaaaaaaaaaaaagtttttaaaatatcgtcttttgtgtttGTCAGAATAAATACAGACCTGGAACAACATGAGTGTGAATAAATTATTAGGTAAACTCTCTCTTTAACGGAACACtctacttttttggggagtaggCCAATTTTATTAGTCTCCTAGAGGAAAACAGTTGGGTTTACCACTTTTTAATCCATTAAGCCAATCTCTGGTCTAGCTGgggtacttttagcttagcataaataattgaatcggattagaccattagcatcatgcTCAAATTTTTCCATAAATAAGCTTGATTCTAATGTAGTTACTTTATGTACAAAAAACTTTCTTGATTATGACATCATAATgggagtatagttcctagccatatcggaATAGAAATCAggaacttttcattttccattggtCTTCGTACATGATGTAATTACATTAGaataaagctttaaatagaaaaatgaccaaaactctttcctgacAtctttgagcaagatgctaacggtctaatccaattcaatgatttatgctaagctaagctaaaatttctccagttgaatggattcaaaaatgataaaactcaactgATTAACTCTAGGGGACTTAAAATGAGTCTTTTTTAAAAAGGAGTGTCCTTTAAAAGAAACCGCCTTTTTCATGAACATCCTTCAGAAATTCCTTTTTAGAAAACAACATATCTTCCTGTAAACTCTCAAACGGAACATCAAGATGCCTATTTTCTCATCATAGTATCCAAAAAATACCGGATTTGTGTCTTACAGTCTTAAGCGACTGCCCTTGTATTGAGATCAGTGTAGGAAGATGATTAAAACTGGACATATTTGGCATCAACTTGTACATGAGGCAGTTATGTTAAATACAGTGTGcagagtgttttgtttttttgcattaaaacttATCATGTACACCTCAACGTTGGCTAATCACGAAAAACATTGTTGAATATTGTTTCGGTTAAAACCGTAGCTTATTTACCAGCCATTAAACTCGAAATAATGACTTGAACACATGcaataaagttttgttttgctttttcttcGATATATCTCTTTTTTTGGTATTTGGAATGAGGCTGGCAATGCTAACGCTACCGTACACCACAAAGCGAATGGGCAGAAGCACAAAGAATGGCACGTTGTGAGCGAGTGCACCGCCATGCACTTTGTGTACAAGAACAGACAGGAGCGCCTTTGGTTTTGGGAGTTATTTGCTCTCCAGGAATGTGAGATTGGCCATGTGCTGCTCCAGGGATTTGACCCCAAATCCGTTGGAGCCTTTGCCGTTGAGAGTTTCC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0009611 response to wounding biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0048589 developmental growth biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042246 tissue regeneration biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0031099 regeneration biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0040007 growth biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042060 wound healing biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029978 True 1763 lncRNA 0.36 2 34749038 34751777

Neighbor

gene id symbol gene type direction distance location
XLOC_014179 abitram coding upstream 2160 34742706 ~ 34746878 (+)
XLOC_014178 NA coding upstream 10673 34701677 ~ 34738365 (+)
XLOC_014177 gabbr2 coding upstream 69300 34311374 ~ 34679738 (+)
XLOC_014176 NA coding upstream 467060 34280764 ~ 34281978 (+)
XLOC_014175 si:ch211-9n13.3 coding upstream 469865 34274504 ~ 34279173 (+)
XLOC_014181 NA coding downstream 135798 34887575 ~ 34914799 (+)
XLOC_014182 ccn4a coding downstream 198423 34950200 ~ 34958185 (+)
XLOC_014183 wdyhv1 coding downstream 250702 35002479 ~ 35004947 (+)
XLOC_014184 zgc:91910 coding downstream 261352 35013129 ~ 35017047 (+)
XLOC_014185 NA coding downstream 609703 35361480 ~ 35363590 (+)
XLOC_014173 BX649545.1 non-coding upstream 541758 34207162 ~ 34207280 (+)
XLOC_014171 dre-mir-187 non-coding upstream 613343 34135607 ~ 34135695 (+)
XLOC_014169 NA non-coding upstream 950628 33795748 ~ 33798410 (+)
XLOC_014186 CR753876.1 non-coding downstream 616825 35368602 ~ 35369837 (+)
XLOC_014187 NA non-coding downstream 621756 35373533 ~ 35379985 (+)
XLOC_014188 NA non-coding downstream 969200 35720977 ~ 35723375 (+)

Expression


Co-expression Network