XLOC_014191


Basic Information

Item Value
gene id XLOC_014191
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35863209 ~ 36018954 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030001
TAAGTTGTCTGCCAACTGCCAATAAAATTCAcgagaagaggaagaagaaaaagacTGTTTGGTAGTTGTATTTGCATGGCTTGACCATGTGCTCAGTGCAGCTTTTGACACCAACCCTGTTATGAGAAACATCTTTTGTTCTTCAGCTTAATAGTCTGACAGAGAGAGACGGAGCACCAAAAGCCCTCCAGGAGTGCATCTTCAACTTCACGCCCCCTCAGGATGGGCGGGAGCAAGGGGACCATCTCTATTCCAGGTTGTACCCGCTGAATCATTCATGAAAAACTCAAGTCACAGCTCCTATCTGGAACCATAGGCAACCCAGAGAAGGACTTCCATTCAAGTGTGTATATCCTTGATAAATACAGTGTCTGTTATCAATATAAACCTTTAGTGGGATTGATGCTCTGTCGCTAACAGAGAGGAGTGTGTACCGATGGGGAAAATCAGCTCCAATAAGAACAGATTTAAATGGTTGCCGTGGCCTGCGATGGGCTCAGCAGATGACTCTTCAGTACGGCAAATCAGCCGGCGACCTTGGCTATGATTGTTCATCACTCTTTCTCTTCACACCCACTTCCTCATCCCTGAATAGACCACTGATCCCTATGGAGTGTTTATTTCTGTACATGTCGTCTTATGTTCTTGCTTGTGTTCTTGGGTGGTGTTTTGAAATTCATATGGATATGCGAgagatttgttttatattatttatttcggGCCAGGATTGCCATGCCAAAATGAACTGGCAAAGATAAAAACTTTTGCAGCAGACTTCTTTAAAGTCTTGAGATTCAGAGTTATATATTATGGaatacaaacctttttttatgatGCAGAATTTTAGAATTGATACAtaatacaaatttatatatatatatatatttataatatatgtataaaatggaCTCATCAAACACATAATTGACTGTGTTGTACATGTAACACCCttatcatacagttgaagtcagaattattagccccccctaaattattagctagtttttttcttttcttccaatttctatttaatgtaaagattttttttcaacacatttctaaacataatagtttgaataactgatttctaattactgttttattttatctttcactTCAGCACTTTAGACACCAGAACTGTAAACTCTTCAATTTCACTTGATGTAAACCgtttgtcacacaaccagcgatcgctttccagagatcgctggttctcacacgaactctcaggactacacttccgcatttcccaggactacacattcatacatggaCTTCTCCTAGACACGCACACCTGCTCATTCATCTACCCTGATTACAATCACCAGCTGCACCTTGTCAGATACTGATACAAACCATTTATAAGCCACTCTTTCacccttccagtttgccgagtcttgttt
>TCONS_00030000
TAAGTTGTCTGCCAACTGCCAATAAAATTCAcgagaagaggaagaagaaaaagacTGTTTGGTAGTTGTATTTGCATGGCTTGACCATGTGCTCAGTGCAGCTTTTGACACCAACCCTGTTATGAGAAACATCTTTTGTTCTTCAGCTTAATAGTCTGACAGAGAGAGACGGAGCACCAAAAGCCCTCCAGGAGTGCATCTTCAACTTCACGCCCCCTCAGGATGGGCGGGAGCAAGGGGACCATCTCTATTCCAGACTCAAGTCACAGCTCCTATCTGGAACCATAGGCAACCCAGAGAAGGACTTCCATTCAAGTGTGTATATCCTTGATAAATACAGTGTCTGTTATCAATATAAACCTTTAGTGGGATTGATGCTCTGTCGCTAACAGAGAGGAGTGTGTACCGATGGGGAAAATCAGCTCCAATAAGAACAGATTTAAATGGTTGCCGTGGCCTGCGATGGGCTCAGCAGATGACTCTTCAGTACGGCAAATCAGCCGGCGACCTTGGCTATGATTGTTCATCACTCTTTCTCTTCACACCCACTTCCTCATCCCTGAATAGACCACTGATCCCTATGGAGTGTTTATTTCTGTACATGTCGTCTTATGTTCTTGCTTGTGTTCTTGGGTGGTGTTTTGAAATTCATATGGATATGCGAgagatttgttttatattatttatttcggGCCAGGATTGCCATGCCAAAATGAACTGGCAAAGATAAAAACTTTTGCAGCAGACTTCTTTAAAGTCTTGAGATTCAGAGTTATATATTATGGaatacaaacctttttttatgatGCAGAATTTTAGAATTGATACAtaatacaaatttatatatatatatatatttataatatatgtataaaatggaCTCATCAAACACATAATTGACTGTGTTGTACATGTAACACCCttatcatacagttgaagtcagaattattagccccccctaaattattagctagtttttttcttttcttccaatttctatttaatgtaaagattttttttcaacacatttctaaacataatagtttgaataactgatttctaattactgttttattttatctttcactTCAGCACTTTAGACACCAGAACTGTAAACTCTTCAATTTCACTTGATGTAAACCgtttgtcacacaaccagcgatcgctttccagagatcgctggttctcacacgaactctcaggactacacttccgcatttcccaggactacacattcatacatggaCTTCTCCTAGACACGCACACCTGCTCATTCATCTACCCTGATTACAATCACCAGCTGCACCTTGTCAGATACTGATACAAACCATTTATAAGCCACTCTTTCacccttccagtttgccgagtcttgttt
>TCONS_00030002
TAAGTTGTCTGCCAACTGCCAATAAAATTCAcgagaagaggaagaagaaaaagacTGTTTGGTAGTTGTATTTGCATGGCTTGACCATGTGCTCAGTGCAGCTTTTGACACCAACCCTGTTATGAGAAACATCTTTTGTTCTTCAGCTTAATAGTCTGACAGAGAGAGACGGAGCACCAAAAGCCCTCCAGGAGTGCATCTTCAACTTCACGCCCCCTCAGGATGGGCGGGAGCAAGGGGACCATCTCTATTCCAGGTTGTACCCGCTGAATCATTCATGAAAAAAGAAGCAACAGCTTGGGCAGAGGAGCGATGCATCAGAAGAAGAACGATGAGTGAAGGACGTGGTAAGTGGAGAGGGGCGTCACACCACTGCAGACAAATGGCAGCCTGTGCCGATGAAGGGAGACACATTGCATCCTTGTAACCGTCCCTGTGTAAAGTCTCAATGCCCTTGTGGCACGACCTGCCGCTCTGCCCATCCATCTCCTCCTCATTCGACTTATCAAGCCAGACAGTGCTAAATGATCGCTGTCTCTCAGTAAACATCTACTCAACCCAGGTCTGAACAGTAGATCACAG
>TCONS_00029727
TAGTTGTATTTGCATGGCTTGACCATGTGCTCAGTGCAGCTTTTGACACCAACCCTGTTATGAGAAACATCTTTTGTTCTTCAGCTTAATAGTCTGACAGAGAGAGACGGAGCACCAAAAGCCCTCCAGGAGTGCATCTTCAACTTCACGCCCCCTCAGGATGGGCGGGAGCAAGGGGACCATCTCTATTCCAGACTCAAGTCACAGCTCCTATCTGGAACCATAGGCAACCCAGAGAAGGACTTCCATTCAAAGAGGAGTGTGTACCGATGGGGAAAATCAGCTCCAATAAGAACAGATTTAAATGGTTGCCGTGGCCTGCGATGGGCTCAGCAGATGACTCTTCAGTACGGCAAATCAGCCGGCGACCTTGGCTATGATTGTTCATCACTCTTTCTCTTCACACCCACTTCCTCATCCCTGAATAGACCACTGATCCCTATGGAGTGTTTATTTCTGTACATGTCGTCTTATGTTCTTGCTTGTGTTCTTGGGTGGTGTTTTGAAATTCATATGGATATGCGAgagatttgttttatattatttatttcggGCCAGGATTGCCATGCCAAAATGAACTGGCAAAGATAAAAACTTTTGCAGCAGACTTCTTTAAAGTCTTGAGATTCAGAGTTATATATTATGGaatacaaacctttttttatgatGCAGAATTTTAGAATTGATACAtaatacaaatttatatatatatatatatttataatatatgtataaaatggaCTCATCAAACACATAATTGACTGTGTTGTACATGTAACACCCttatca
>TCONS_00030003
TAGTTGTATTTGCATGGCTTGACCATGTGCTCAGTGCAGCTTTTGACACCAACCCTGTTATGAGAAACATCTTTTGTTCTTCAGCTTAATAGTATCCTATCATCCACTTCCGGGATATAAGAAGATTTCCCAGATCGTGGAGTTTACAGGACATAAATTAGAGATGCCAAGGCTGGTGATGAAGTTGTGTGCCACATTTCCACTGTTGCTTTGGTGGTCTCATTGGGGTTTCCTTGCTCATTGGCTAAGAGTCTGACAGAGAGAGACGGAGCACCAAAAGCCCTCCAGGAGTGCATCTTCAACTTCACGCCCCCTCAGGATGGGCGGGAGCAAGGGGACCATCTCTATTCCAGGTTGTACCCGCTGAATCATTCATGAAAAACTCAAGTCACAGCTCCTATCTGGAACCATAGGCAACCCAGAGAAGGACTTCCATTCAAGTGTGTATATCCTTGATAAATACAGTGTCTGTTATCAATATAAACCTTTAGTGGGATTGATGCTCTGTCGCTAACAGAGAGGAGTGTGTACCGATGGGGAAAATCAGCTCCAATAAGAACAGATTTAAATGGTTGCCGTGGCCTGCGATGGGCTCAGCAGATGACTCTTCAGTACGGCAAATCAGCCGGCGACCTTGGCTATGATTGTTCATCACTCTTTCTCTTCACACCCACTTCCTCATCCCTGAATAGACCACTGATCCCTATGGAGTGTTTATTTCTGTACATGTCGTCTTATGTTCTTGCTTGTGTTCTTGGGTGGTGTTTTGAAATTCATATGGATATGCGAgagatttgttttatattatttatttcggGCCAGGATTGCCATGCCAAAATGAACTGGCAAAGATAAAAACTTTTGCAGCAGACTTCTTTAAAGTCTTGAGATTCAGAGTTATATATTATGGaatacaaacctttttttatgatGCAGAATTTTAGAATTGATACAtaatacaaatttatatatatatatatatttataatatatgtataaaatggaCTCATCAAACACATAATTGACTGTGTTGTACATGTAACACCCttatcatacagttgaagtcagaattattagccccccctaaattattagctagtttttttcttttcttccaatttctatttaatgtaaagattttttttcaacacatttctaaacataatagtttgaataactgatttctaattactgttttattttatctttcactTCAGCACTTTAGACACCAGAACTGTAAACTCTTCAATTTCACTTGATGTAAACCgtttgtcacacaaccagcgatcgctttccagagatcgctggttctcacacgaactctcaggactacacttccgcatttcccaggactacacattcatacatggaCTTCTCCTAGACACGCACACCTGCTCATTCATCTACCCTGATTACAATCACCAGCTGCACCTTGTCAGATACTGATACAAACCATTTATAAGCCACTCTTTCacccttccagtttgccgagtcttgttt
>TCONS_00030004
ctcaccatgtacatcggtggacttgagatgcagaggacCATgttgacagggtttgagtccagtgaagaatggttccagaaagcagAAGAAGCAACAGCTTGGGCAGAGGAGCGATGCATCAGAAGAAGAACGATGAGTGAAGGACGTGGTAAGTGGAGAGGGGCGTCACACCACTGCAGACAAATGGCAGCCTGTGCCGATGAAGACCTCCCCCCATCCCGCCATCCACAACTGTTTCACTCTTTGCTGACATACTTGAATTTGGCTATAATCAAATTAACTTATTCCTGCCTACCGGTGTAAAAACACTTCATTGGGTATAGCTTGTGAGGGCAGGAACATGCTTACCTCTGCATGTGGGAGGTGGAGGTATAAAATGGAGCTAGGTCAAAGTCATATGCCAGCAGGTTAGTGTAATGACCTGCCTGAG

Function

GO:

id name namespace
GO:0008263 pyrimidine-specific mismatch base pair DNA N-glycosylase activity molecular_function
GO:0000700 mismatch base pair DNA N-glycosylase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030001 False 1403 lncRNA 0.39 3 35863209 35934775
TCONS_00030000 False 1375 lncRNA 0.39 3 35863209 35934775
TCONS_00030002 False 582 lncRNA 0.49 4 35863209 36018954
TCONS_00029727 False 789 lncRNA 0.40 4 35863271 35934328
TCONS_00030003 False 1500 lncRNA 0.40 4 35863271 35934775
TCONS_00030004 True 430 lncRNA 0.49 3 35975603 35981291

Neighbor

gene id symbol gene type direction distance location
XLOC_014190 angpt2b coding upstream 10819 35799384 ~ 35852390 (+)
XLOC_014189 BX537287.1 coding upstream 84252 35778842 ~ 35778957 (+)
XLOC_014188 NA coding upstream 139834 35720977 ~ 35723375 (+)
XLOC_014187 NA coding upstream 483224 35373533 ~ 35379985 (+)
XLOC_014186 CR753876.1 coding upstream 493372 35368602 ~ 35369837 (+)
XLOC_014192 NA coding downstream 91988 36110942 ~ 36115841 (+)
XLOC_014193 CR936278.1 coding downstream 184124 36203078 ~ 36203195 (+)
XLOC_014194 AL732499.1 coding downstream 223837 36242791 ~ 36242908 (+)
XLOC_014195 NA coding downstream 559960 36578914 ~ 36579838 (+)
XLOC_014196 NA coding downstream 606175 36625129 ~ 36627634 (+)
XLOC_014185 NA non-coding upstream 499619 35361480 ~ 35363590 (+)

Expression


Co-expression Network