XLOC_014215


Basic Information

Item Value
gene id XLOC_014215
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38733094 ~ 38778761 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030014
TGGTGTTCATCAGTTTGaaaatttattttcatataaaaaGACACTCTATGAAAACAGTAGAGGACTACTTTGTACAAtcttatgtataaaaaaaacttaaatggtGCAAGGAGGATTCTCTGTGGTAGCCATCTTCTTTAGCCAATGGGATCGTGTGTGCTGGCAAGGGGAGGGATCTGAAAGTTTCAAACACGTCAAGTCATGAAGAAAACATCCTGCTGGTCAGGAAGTCCGGGGAAACATATTCAGTCTTCAATCCGTTCACACCCAGCTGTTGTTCACCATTCATTTTTCAACGATCATCCTCCTCAcaatgcacatatccaaaatacATATCTCATAAATTTGATGTGACTGTAAGGCCATTCTCaagtagtttttttctttttctttttaaagagcAATACATAAATCTGTTCAAAACATAGTTAGTTTAGTGGGGTTTTTGGGTGTAATGCTCCAGTTTCATTAAGTAGGACTCTGTAAACATCTATGAAAAACCCAACACTCATATACATAGACGGAAATAGAGTGGGATGACAAAACATTGAAACAGCTGATGACTGCATCAGATAaaatagcaaaacaaaaaacaaacaggcaCTGTAAAAAAAGCAGGGTTTGCGTACAGGTGTGTGGTTGTTAAGACGGCATCTTATAGAACTTAAATATCCAGCTCACCTGTTTGGTTAATCTTATTGATTTTTCAAAACAAGGCTACAATTGCTTTTCTCAGAACGGAAAGATAAATGACCTCACTTTCTTATAGACTTAATCTAAAATTAACCCCTCTGGTTgcatttgtcttgtttcaagtgggatttgtgtttgtgttttcagcaTTGGAGGCAGGCACACCAACCATGATGCTCTCGCATCAGTTGCTATTATGATTATTGAAGCCATTGAAATTAGCGTTAACTTTAATCTTGGTTAATCTTACCCGACCTAAAAACCTTTAGAGTCAACCACAAGTGTGGTTGAGGTCAACAGAGTGGATGATTTTACTCACTCGTAGAGTTTGGTCTCCATTACACTTACACCCCTAAACCTCATTCTCATCCAAGTCAGGGCACCCCTGTCCCTCTCAGAGTGGGATTTAACTGGTGTTTCATGCATGCTAAGTGGGCACACTAAATACCACACACACTCTAACATGCCTTTAGACCAGGAGACTGAAGCTTAATAACACACTTACTATTACCTGGCCTCTGTTATCTCACtcctatccgggtcacggcaccagtaGGGGATAAAGTCACTAACAAggaccctgaagaccacagcCTCTAATGTCAAACACCAGTGTGCCGCTTCAGGTCAGGAGAGTGAGGTTTTTCACTTCTTTTCCACTCAATCTCTGAATTCTCACaaccatccgggtcacggcaccaatttacACATCCAGTACTCACCCTGCTCTGAGCAGGAATCAGACTGGAAAAGGTGGCACGCAATCTAACAAAACAGTCAAGACTGTAGCCTCTAACAGTCACTAGTGTGCTTCTTGAGACCAGGATTCCACTCAACCCTCAAAAACACAACCATCAGGGTCACGGCACCAACGCAACCATTCCAGTTTAAATTACTCCCCCAGAATACCAGCTTTTGTTTCTGAAATGGGTGGTGTGCACACTTATACTAAATAGCACAACCTCTAGCATTACTTGCTAAtgtgcctttgaggcctgggggaAGAGTTTTTACTCGCACAACCAAAATATATTCCTACATATTCTGTATGCAATATCACAATTATGCTACAGTACTGGATACCAGCACTGCAGATCAGTGTCAACCTTCTGACAAACAGAGCTCTTgttcgtgtgatattgcttatctCATATATGAGAGTAAAATTCTTGACTGCGGTTGAGAAGGGAGACGAGAAACTACTTTTAATTGCCATGGTGGTTTGGAGATTTTTCAGGCGGAAGAGGCGGCCCATGTTCCCCATTAGTGCAGATTACTTGCAAAGGTTAAAATGGCATGCTCTAGTCTTGCCATCTGTGCCTATATGATATGCTGACTTTAGGGATCTTTGAGCAGATGAAATTCGCGCCAAGTAAGAAAATGTCAGGACAAATCGTTATTCTCCCAAGATAATTACCACACCTCTCTCGCTTGTTCGCCCTCTCTTTCTCGCTTTCCGAGTCTCCATGTGGAGTTACATCAGCCAACACGATTAATGAATGGGTTATGAAGAGGAGAAGGGTTGACAAAGATGACCTCGGCAGCCTGCTTAGCATTAAGCTAACTGTCAAACTCCATGGATGGAGTGCAAAAAAATCAGTTCAGCTAGAGTCACTGGTTTTCAGTTTCACAAAGAGCTACTTTTTTAGCGAGAGTAGAAGTGAAGCACAACATAAAGATGGCAAAGAAATGTGGAAACTTCCCTGACAGCAGAACTTTGCGTTGGTTAAAAAAAACTTCTCAGTTTGAATTGGATAAGCCTGATACCAAATTCCAAAGCTTTCTATGACTGGAATGCGCATTATTTTGGTTGTTTTGGAGATGGATGCTTCCCTTAAGTGAAATGATTTGACATTTATCACACATACAATTCTGTAAAGCGTTTTGGAAAGCATGAATAAAACACAATCCCACATGAAATGATACCTGAAGTTTGactgtataatataaaataaaatatatatatatatatatattaaacaaaataatgcacaagcattctaaataaaaatatagaaaacaaAAGAAAGCTAGATAAGCTTTTGTGTACAGTACGCCTGATGCagaggggggaaaaaaagcagAGGATGGCACATATTAATAATCGCTTTCAAAACTTCCCCTCCCTCTCccctgacaaacaaacaaaccaagaaAAAGGGAAACAGAACTTGAGTCATCCAAGAAATGCGAAGACAGAAAGGGGGGAAAAAACCCTAGGGGGTTATTAAACAGTGTGCGAATCATCAATAccgatttttctttttttttttcctctataaaaaaagaagggtgcagaaatattatttttttttgttaaattccCAAATCATCAAACAGGTGAAAGAGAATCCTTTCTGGAGTAAAATCAAGACATTTCAGAAACAGTTTGTTAAAAATTTGTACCATACTCTCCAGGCCTCACTCTTTCACGTAATGTCTCTGTGTGAAAATATAGAATAGAGCACTCTTCATCTCTGGTTTGTCCTGTAAACGAGTACAGAATCCTTTAGAAACGCGTCTTGCTGAAGATCACTGACTGTGTGAGTATGTAAGAGGGTTTAGTTGTCTCTTAGTTtgttgtgggtgtgtgtttttctTCACACTTCAGTCTGGAAGTCTCCTTCGGATGTGTCAGGTGTGTTGACGGAGGATGTGTCCCAGGGTTTACTTCGTAACTCCAGTCTGTCCTTGTGTTCGTTGGAGCCACACGTCTGCTCAGGGGTCATGGTCTTAAAGCTGTCCCAAGATCGCTGGTCATCTGTGGTGGACTTGTCCTGAATTTCCAAAGATCCAGCCGAGATGCTGGTGTTGGTGCTGCCCAGGTTGCGGGGAAGGGTTCTGGTGCGCTCCACCGTTCCCGAGGTGAGGATCTGCCGGACAGAAGGACGATTCTGCTTGACCTGCAGAGTGTGGGTGTTggtgtgggagtgtgtgtgtccGGCATGGGCCGGTAACTGTTTGAGCGTGCTGTAGGAGCGGTTTAAGTTCATGCTGATGTGGTCTGTAGCTGCAAAGTCTGCAGGGTATGCTTCACTCTCGGCTGGATGCAGAGTCATTGGTGAAGGGGGTGGGGGAAAAGGGGGGTCATCTACTGTAATGTTTAGGGGTTTCCCCTCATCCTGGGGTGGAGGAGGGGGCTTTAGACTGACTGTTCGACGTGGCAACACCATGTAATCCCCTTCCCCACCTCCTCCACCAGTTGAATCCTGGGTGGAAGAAGGATTAGGTCGGGCCCAACCCAACCCACTCTCTGTGCACAGATAGATGGGTCCAGATCGCTGATGCTGACCTTGTTGCTCCACATTGACCTCTTTCTTCAGTGGCTGCTCGCTGAGCTCGTTTAGGGGACCCAACGGAGGTACCTGTACCAGGAGGTTAGGGGGTGGGATGTTTCCAGGCAAACTGCTGAAATTAACGCCTTCCTGATGAGCTGCCAACTTGGGATCATCCTCGTCATCCAGGGAGATGCGAGATAGGGTTCCGGTTATGGTGGCAGGGTTACAGGTGTTCACCTCCTTAAAGATGACTGAGGTAGGGAGAAGAAGGGAAGAGAGGAAGAGAACAGAGAAAGACAGAAGTGGGGAGGAAGAAAACGACAGAGCAGAGGTCGAGTACACAAGACCACACAGATGGACAGTGACAAAGAGAAACCAACCATAACAAAGTTGAGTGGTGAAATGATACATGATAGAAAAGAAA
>TCONS_00030015
TGGTGTTCATCAGTTTGaaaatttattttcatataaaaaGACACTCTATGAAAACAGTAGAGGACTACTTTGTACAAtcttatgtataaaaaaaacttaaatggtGCAAGGAGGATTCTCTGTGGTAGCCATCTTCTTTAGCCAATGGGATCGTGTGTGCTGGCAAGGGGAGGGATCTGAAAGTTTCAAACACGTCAAGTCATGAAGAAAACATCCTGCTGGTCAGGAAGTCCGGGGAAACATATTCAGTCTTCAATCCGTTCACACCCAGCTGTTGTTCACCATTCATTTTTCAACGATCATCCTCCTCAcaatgcacatatccaaaatacATATCTCATAAATTTGATGTGACTGTAAGGCCATTCTCaagtagtttttttctttttctttttaaagagcAATACATAAATCTGTTCAAAACATAGTTAGTTTAGTGGGGTTTTTGGGTGTAATGCTCCAGTTTCATTAAGTAGGACTCTGTAAACATCTATGAAAAACCCAACACTCATATACATAGACGGAAATAGAGTGGGATGACAAAACATTGAAACAGCTGATGACTGCATCAGATAaaatagcaaaacaaaaaacaaacaggcaCTGTAAAAAAAGCAGGGTTTGCGTACAGGTGTGTGGTTGTTAAGACGGCATCTTATAGAACTTAAATATCCAGCTCACCTGTTTGGTTAATCTTATTGATTTTTCAAAACAAGGCTACAATTGCTTTTCTCAGAACGGAAAGATAAATGACCTCACTTTCTTATAGACTTAATCTAAAATTAACCCCTCTGGTTgcatttgtcttgtttcaagtgggatttgtgtttgtgttttcagcaTTGGAGGCAGGCACACCAACCATGATGCTCTCGCATCAGTTGCTATTATGATTATTGAAGCCATTGAAATTAGCGTTAACTTTAATCTTGGTTAATCTTACCCGACCTAAAAACCTTTAGAGTCAACCACAAGTGTGGTTGAGGTCAACAGAGTGGATGATTTTACTCACTCGTAGAGTTTGGTCTCCATTACACTTACACCCCTAAACCTCATTCTCATCCAAGTCAGGGCACCCCTGTCCCTCTCAGAGTGGGATTTAACTGGTGTTTCATGCATGCTAAGTGGGCACACTAAATACCACACACACTCTAACATGCCTTTAGACCAGGAGACTGAAGCTTAATAACACACTTACTATTACCTGGCCTCTGTTATCTCACtcctatccgggtcacggcaccagtaGGGGATAAAGTCACTAACAAggaccctgaagaccacagcCTCTAATGTCAAACACCAGTGTGCCGCTTCAGGTCAGGAGAGTGAGGTTTTTCACTTCTTTTCCACTCAATCTCTGAATTCTCACaaccatccgggtcacggcaccaatttacACATCCAGTACTCACCCTGCTCTGAGCAGGAATCAGACTGGAAAAGGTGGCACGCAATCTAACAAAACAGTCAAGACTGTAGCCTCTAACAGTCACTAGTGTGCTTCTTGAGACCAGGATTCCACTCAACCCTCAAAAACACAACCATCAGGGTCACGGCACCAACGCAACCATTCCAGTTTAAATTACTCCCCCAGAATACCAGCTTTTGTTTCTGAAATGGGTGGTGTGCACACTTATACTAAATAGCACAACCTCTAGCATTACTTGCTAAtgtgcctttgaggcctgggggaAGAGTTTTTACTCGCACAACCAAAATATATTCCTACATATTCTGTATGCAATATCACAATTATGCTACAGTACTGGATACCAGCACTGCAGATCAGTGTCAACCTTCTGACAAACAGAGCTCTTgttcgtgtgatattgcttatctCATATATGAGAGTAAAATTCTTGACTGCGGTTGAGAAGGGAGACGAGAAACTACTTTTAATTGCCATGGTGGTTTGGAGATTTTTCAGGCGGAAGAGGCGGCCCATGTTCCCCATTAGTGCAGATTACTTGCAAAGGTTAAAATGGCATGCTCTAGTCTTGCCATCTGTGCCTATATGATATGCTGACTTTAGGGATCTTTGAGCAGATGAAATTCGCGCCAAGTAAGAAAATGTCAGGACAAATCGTTATTCTCCCAAGATAATTACCACACCTCTCTCGCTTGTTCGCCCTCTCTTTCTCGCTTTCCGAGTCTCCATGTGGAGTTACATCAGCCAACACGATTAATGAATGGGTTATGAAGAGGAGAAGGGTTGACAAAGATGACCTCGGCAGCCTGCTTAGCATTAAGCTAACTGTCAAACTCCATGGATGGAGTGCAAAAAAATCAGTTCAGCTAGAGTCACTGGTTTTCAGTTTCACAAAGAGCTACTTTTTTAGCGAGAGTAGAAGTGAAGCACAACATAAAGATGGCAAAGAAATGTGGAAACTTCCCTGACAGCAGAACTTTGCGTTGGTTAAAAAAAACTTCTCAGTTTGAATTGGATAAGCCTGATACCAAATTCCAAAGCTTTCTATGACTGGAATGCGCATTATTTTGGTTGTTTTGGAGATGGATGCTTCCCTTAAGTGAAATGATTTGACATTTATCACACATACAATTCTGTAAAGCGTTTTGGAAAGCATGAATAAAACACAATCCCACATGAAATGATACCTGAAGTTTGactgtataatataaaataaaatatatatatatatatatattaaacaaaataatgcacaagcattctaaataaaaatatagaaaacaaAAGAAAGCTAGATAAGCTTTTGTGTACAGTACGCCTGATGCagaggggggaaaaaaagcagAGGATGGCACATATTAATAATCGCTTTCAAAACTTCCCCTCCCTCTCccctgacaaacaaacaaaccaagaaAAAGGGAAACAGAACTTGAGTCATCCAAGAAATGCGAAGACAGAAAGGGGGGAAAAAACCCTAGGGGGTTATTAAACAGTGTGCGAATCATCAATAccgatttttctttttttttttcctctataaaaaaagaagggtgcagaaatattatttttttttgttaaattccCAAATCATCAAACAGGTGAAAGAGAATCCTTTCTGGAGTAAAATCAAGACATTTCAGAAACAGTTTGTTAAAAATTTGTACCATACTCTCCAGGCCTCACTCTTTCACGTAATGTCTCTGTGTGAAAATATAGAATAGAGCACTCTTCATCTCTGGTTTGTCCTGTAAACGAGTACAGAATCCTTTAGAAACGCGTCTTGCTGAAGATCACTGACTGTGTGAGTATGTAAGAGGGTTTAGTTGTCTCTTAGTTtgttgtgggtgtgtgtttttctTCACACTTCAGTCTGGAAGTCTCCTTCGGATGTGTCAGGTGTGTTGACGGAGGATGTGTCCCAGGGTTTACTTCGTAACTCCAGTCTGTCCTTGTGTTCGTTGGAGCCACACGTCTGCTCAGGGGTCATGGTCTTAAAGCTGTCCCAAGATCGCTGGTCATCTGTGGTGGACTTGTCCTGAATATGCACTTCCAAAGATCCAGCCGAGATGCTGGTGTTGGTGCTGCCCAGGTTGCGGGGAAGGGTTCTGGTGCGCTCCACCGTTCCCGAGGTGAGGATCTGCCGGACAGAAGGACGATTCTGCTTGACCTGCAGAGTGTGGGTGTTggtgtgggagtgtgtgtgtccGGCATGGGCCGGTAACTGTTTGAGCGTGCTGTAGGAGCGGTTTAAGTTCATGCTGATGTGGTCTGTAGCTGCAAAGTCTGCAGGGTATGCTTCACTCTCGGCTGGATGCAGAGTCATTGGTGAAGGGGGTGGGGGAAAAGGGGGGTCATCTACTGTAATGTTTAGGGGTTTCCCCTCATCCTGGGGTGGAGGAGGGGGCTTTAGACTGACTGTTCGACGTGGCAACACCATGTAATCCCCTTCCCCACCTCCTCCACCAGTTGAATCCTGGGTGGAAGAAGGATTAGGTCGGGCCCAACCCAACCCACTCTCTGTGCACAGATAGATGGGTCCAGATCGCTGATGCTGACCTTGTTGCTCCACATTGACCTCTTTCTTCAGTGGCTGCTCGCTGAGCTCGTTTAGGGGACCCAACGGAGGTACCTGTACCAGGAGGTTAGGGGGTGGGATGTTTCCAGGCAAACTGCTGAAATTAACGCCTTCCTGATGAGCTGCCAACTTGGGATCATCCTCGTCATCCAGGGAGATGCGAGATAGGGTTCCGGTTATGGTGGCAGGGTTACAGGTGTTCACCTCCTTAAAGATACCTGTTTGGCATGCCAGGTCCACATCTTTCTCAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030014 False 4395 lncRNA 0.43 2 38733094 38777734
TCONS_00030015 True 4263 lncRNA 0.43 3 38733094 38778761

Neighbor

gene id symbol gene type direction distance location
XLOC_014214 NA coding upstream 257229 38473440 ~ 38475865 (+)
XLOC_014213 col9a2 coding upstream 265494 38422059 ~ 38467600 (+)
XLOC_014212 NA coding upstream 348470 38378399 ~ 38384624 (+)
XLOC_014210 phf14 coding upstream 405361 38167468 ~ 38327733 (+)
XLOC_014211 BX530058.2 coding upstream 476702 38256276 ~ 38256392 (+)
XLOC_014216 CABZ01045414.1 coding downstream 168868 38947629 ~ 38959047 (+)
XLOC_014217 CABZ01045413.1 coding downstream 169811 38948572 ~ 38948686 (+)
XLOC_014218 CT737129.1 coding downstream 497212 39275973 ~ 39293345 (+)
XLOC_014219 NA coding downstream 630562 39409323 ~ 39415701 (+)
XLOC_014220 NA coding downstream 971297 39750058 ~ 39752174 (+)
XLOC_014209 NA non-coding upstream 712999 38017599 ~ 38020095 (+)
XLOC_014208 NA non-coding upstream 784808 37937807 ~ 37948286 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110496862 LOC106588838 misc NC_048582.1 CM023236.2 56028870 ~ 56504444 (+)
striped catfish (Pangasianodon hypophthalmus) G402147 adgrb2 non-coding NC_047623.1 CM018569.1 8615192 ~ 8653005 (+)