XLOC_014240 (casd1)


Basic Information

Item Value
gene id XLOC_014240
gene name casd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41006975 ~ 41034224 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028306
TGGCAGTTTAGGATataggggaaaaaaaagtttaaatattaacTAGACTGGTTTGACTTCAGGTTAATCAAATGCAACTGTCTGATGTAAATAATTTGGAACTTAAATCTAATACCAGAAGAAAATGAATCCTGAGGTGGATATGAAAGCTGAGGACTGCAATCACGCAGAAGCTGAAGCACACGCGGGAAACGGGCACGCGCCGCTCGGCTTTGCTTTCGTCAGCTCCGCCGCAGCTCGTCTGTCTGCCTGTTGTCATGGAGGAGCCAAGATGGCGGTCCTGGCCTATAACCTAGGCAAACGggaaataaatcagtatttcagCATCAAAAATGCAAAGTTGCTGGCAGCCGCCGCTGTCGTCCTTCTCACTGTGTTTCACGCGGCTTCTCGACATTATGGAAGCAGTGACACATGTGACTGGCTGTTATCCAGTGGACGTTTTTTAGGGGACAATGTGTGGCAGCCCTATGGGTGCATGTTACACAAGTACAAAAGCACTGAAGCAAAGTTCTGCCTCAGAGAGAAGAGAATAGCATTTGTCGGAGACTCTAGAATACGTCAGCTCTTCTATTCTTTCATCAAAATGATGAACCCTGAGGTGAAAGAAGTTGGGAACAAGCATGAGAACATCCCTTTTGTCGATGGTGATTCCACTGTGGTAAGTGATTTTAATTTGTGGTTTCTTAAAAATTTCCTGTGGTACGCAGAAGTGAACAATTCCTTGAAGGAGCAGTTAATGTTATGGACTGAGGGATCTGCTTCCAAACCACATGTCATCATCATTGGTGCTGCTACGTGGTCCATTAAGTTGCACAACGGCAAGAGTGAGGCGCTTTTTCAGTACAAGGCAAACCTCACAGCTATAGCAGACACACTGGAAAAACTAGCCGAGCACAGTGAAGTCTACTGGGTTCTACAAGATCCTGTTTATGAGGATGTGCTAAGTGAAAGCCGAAAGATGATCACAAATGAGCAGATAAATCTGTACAATGAGGCAGCAGTTAGTACCCTGAATACCAGCAAAAAGAAGGTCAAATTCCTGGAGGCATCTAGGCAAGCTGCTATGGAGACCATTTCTCAGTCGGTGGACGGCCTGCATCTTCCTGAGAGCACAAGAGATGTTGGCGCCATGGTACTTATGAACTCCATGTGCAACAAGATCCTGAAGCCCATTGATGGCTCCTGCTGTCAGAGCGCTCCTCCGCTAAGCGTCCTTCAGAAGCTAGCAGCTGCTGTCCTCCTGGTGTCCGTCGTCTGCTTCGTCCTGCTGGGCTTCAGCTCACATCGGAAGAGCAGACCCGCTCCTGATGTGGAGAGCGGAGAGGAGAAAAAACACCCCGCTGCTGTGGGGCAGCTCAACCCAAAGGGACCATTACTGGCCATCGGCAAGATGAGCCTCATCATGCTGTACTTCTACCTGTGTGACCGGGCTGACATCTTTATGAAGGAGCAGAAATTCTACACACACTCCGCTTTTTTCATTCCTCTCATCTACATCTTCGTTCTGGGTGTCTTCTACAGTGAGAACAGCAAAGAGACAAAACTTTTGAACCGAGAGCAGACGGATGAATGGAAGGGCTGGATGCAGCTGGTCATTCTTATTTATCACATTTCTGGAGCCAGCGcattCATACCGGTGTACATGCACGTCCGTGTGCTGGTCGCTGCGTATCTCTTCCAAACAGGATATGGACACTTCTCCTTCTTCTGGCTAAAGGGAGACTTTGGACTTTACAGGGTTTGTCAGGTTCTCTTCAGGCTTAATTTTCTTGTGGTGGTGCTGTGTCTGGTTATGGACAGGCCTTATCAGTTTTATTACTTTGTGCCTCTGGTCACCTTTTGGTTTGCAGTTATTTATGCCACAATGGCACTGTGGCCACAGATTCTTCAAAAGCAAGCTAACGGTAGTGCATTCTGGAATCTGGCCCTGTTGTTGAAACTTCTGGGTTTGCTTCTTTTCATCGGATTTTTTGCATACTCGCAGGCTGTGGTCAATGGGATGCTGTTTGCCTTCATTTACCTGCTGCTGCAGAAATATCAGCTGCTGTCTGAAGGCAAAGGAGAGCCTCTCTTCTCCAACAAGATTTCCAACTGTCTGCTCTTTGTTTCTGTCGTTTCTTTTATGACGTACTCCATTTGGGCCAGTGGGTGCAAAAACAAGTCCGAGTGTAATGAGatgcatccatacatttctgtTATTCTGGCTTTCATTTTGATCCGGAATATTCCTGGTTACGCTCGCTCTTTGTACAGCTCATTCTTTGCATGGTTTGGAAAGATCTCCCTAGAGCTCTTCATATGCCAGTATCACATTTGGTTGGCAGCAGACACCAAGGGCATCCTGGTCCTCATTCCCGGAAACCCCACGTTAAACATAATCGTCAGCACCTTCATCTTTGTCTGCGTGGCTCATGAAATCTCCCAGATCACCAATGACCTGGCCCAGGTGGCCATCCCTAAAGAGAGCGGGCCTCTGCTGAAGAGACTGCTGGGAGCTGGAGTCTTTCTAGTGCTGGTACTGACACTGTCCCAAAAAGACTAAAGCAATCCGGAGTACATCAGAATAAAGGCAGCCCAGAACGTTTATTTCCTAGGAATCAATCCAGGGATCTGTTTAACGCCATTGGTCTGAATACAAAACTCAAGCCAAGGAGCGCCTGTGAAATGGATTCTTGCATTCGACAAATCGCACGAGAAACTGTGTGCAAACTAACGCTCCATCTCTGAGATGAGTTTTACAGacagtatttaataataataatttatgtttgtattttatac
>TCONS_00028305
TGGCAGTTTAGGATataggggaaaaaaaagtttaaatattaacTAGACTGGTTTGACTTCAGGTTAATCAAATGCAACTGTCTGATGTAAATAATTTGGAACTTAAATCTAATACCAGAAGAAAATGAATCCTGAGGTGGATATGAAAGCTGAGGACTGCAATCACGCAGAAGCTGAAGCACACGCGGGAAACGGGCACGCGCCGCTCGGCTTTGCTTTCGTCAGCTCCGCCGCAGCTCGTCTGTCTGCCTGTTGTCATGGAGGAGCCAAGATGGCGGTCCTGGCCTATAACCTAGGCAAACGggaaataaatcagtatttcagCATCAAAAATGCAAAGTTGCTGGCAGCCGCCGCTGTCGTCCTTCTCACTGTGTTTCACGCGGCTTCTCGACATTATGGAAGCAGTGACACATGTGACTGGCTGTTATCCAGTGGACGTTTTTTAGGGGACAATGTGTGGCAGCCCTATGGGTGCATGTTACACAAGTACAAAAGCACTGAAGCAAAGTTCTGCCTCAGAGAGAAGAGAATAGCATTTGTCGGAGACTCTAGAATACGTCAGCTCTTCTATTCTTTCATCAAAATGATGAACCCTGAGGTGAAAGAAGTTGGGAACAAGCATGAGAACATCCCTTTTGTCGATGGTGATTCCACTGTGAATTTCCTGTGGTACGCAGAAGTGAACAATTCCTTGAAGGAGCAGTTAATGTTATGGACTGAGGGATCTGCTTCCAAACCACATGTCATCATCATTGGTGCTGCTACGTGGTCCATTAAGTTGCACAACGGCAAGAGTGAGGCGCTTTTTCAGTACAAGGCAAACCTCACAGCTATAGCAGACACACTGGAAAAACTAGCCGAGCACAGTGAAGTCTACTGGGTTCTACAAGATCCTGTTTATGAGGATGTGCTAAGTGAAAGCCGAAAGATGATCACAAATGAGCAGATAAATCTGTACAATGAGGCAGCAGTTAGTACCCTGAATACCAGCAAAAAGAAGGTCAAATTCCTGGAGGCATCTAGGCAAGCTGCTATGGAGACCATTTCTCAGTCGGTGGACGGCCTGCATCTTCCTGAGAGCACAAGAGATGTTGGCGCCATGGTACTTATGAACTCCATGTGCAACAAGATCCTGAAGCCCATTGATGGCTCCTGCTGTCAGAGCGCTCCTCCGCTAAGCGTCCTTCAGAAGCTAGCAGCTGCTGTCCTCCTGGTGTCCGTCGTCTGCTTCGTCCTGCTGGGCTTCAGCTCACATCGGAAGAGCAGACCCGCTCCTGATGTGGAGAGCGGAGAGGAGAAAAAACACCCCGCTGCTGTGGGGCAGCTCAACCCAAAGGGACCATTACTGGCCATCGGCAAGATGAGCCTCATCATGCTGTACTTCTACCTGTGTGACCGGGCTGACATCTTTATGAAGGAGCAGAAATTCTACACACACTCCGCTTTTTTCATTCCTCTCATCTACATCTTCGTTCTGGGTGTCTTCTACAGTGAGAACAGCAAAGAGACAAAACTTTTGAACCGAGAGCAGACGGATGAATGGAAGGGCTGGATGCAGCTGGTCATTCTTATTTATCACATTTCTGGAGCCAGCGcattCATACCGGTGTACATGCACGTCCGTGTGCTGGTCGCTGCGTATCTCTTCCAAACAGGATATGGACACTTCTCCTTCTTCTGGCTAAAGGGAGACTTTGGACTTTACAGGGTTTGTCAGGTTCTCTTCAGGCTTAATTTTCTTGTGGTGGTGCTGTGTCTGGTTATGGACAGGCCTTATCAGTTTTATTACTTTGTGCCTCTGGTCACCTTTTGGTTTGCAGTTATTTATGCCACAATGGCACTGTGGCCACAGATTCTTCAAAAGCAAGCTAACGGTAGTGCATTCTGGAATCTGGCCCTGTTGTTGAAACTTCTGGGTTTGCTTCTTTTCATCGGATTTTTTGCATACTCGCAGGAACTGTTTGAGGGCATTTTCTCTGTATGGCCTCTTTCTAAGCTCTTTGAACTGCAAGGAAGCATCCATGAGTGGTGGTTCAGGTGGAAACTGGACCGATTTGCTGTGGTCAATGGGATGCTGTTTGCCTTCATTTACCTGCTGCTGCAGAAATATCAGCTGCTGTCTGAAGGCAAAGGAGAGCCTCTCTTCTCCAACAAGATTTCCAACTGTCTGCTCTTTGTTTCTGTCGTTTCTTTTATGACGTACTCCATTTGGGCCAGTGGGTGCAAAAACAAGTCCGAGTGTAATGAGatgcatccatacatttctgtTGTGCAGATTCTGGCTTTCATTTTGATCCGGAATATTCCTGGTTACGCTCGCTCTTTGTACAGCTCATTCTTTGCATGGTTTGGAAAGATCTCCCTAGAGCTCTTCATATGCCAGTATCACATTTGGTTGGCAGCAGACACCAAGGGCATCCTGGTCCTCATTCCCGGAAACCCCACGTTAAACATAATCGTCAGCACCTTCATCTTTGTCTGCGTGGCTCATGAAATCTCCCAGATCACCAATGACCTGGCCCAGGTGGCCATCCCTAAAGAGAGCGGGCCTCTGCTGAAGAGACTGCTGGGAGCTGGAGTCTTTCTAGTGCTGGTACTGACACTGTCCCAAAAAGACTAAAGCAATCCGGAGTACATCAGAATAAAGGCAGCCCAGAACGTTTATTTCCTAGGAATCAATCCAGGGATCTGTTTAACGCCATTGGTCTGAATACAAAACTCAAGCCAAGGAGCGCCTGTGAAATGGATTCTTGCATTCGACAAATCGCACGAGAAACTGTGTGCAAACTAACGCTCCATCTCTGAGATGAGTTTTACAGacagtatttaataataataatttatgtttgtattttatac

Function

symbol description
casd1 Predicted to enable N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Orthologous to human CASD1 (CAS1 domain containing 1).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0047186 N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-329 Predicted to enable N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Orthologous to human CASD1 (CAS1 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000023900

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028306 False 2784 mRNA 0.46 17 41006975 41034224
TCONS_00028305 True 2862 mRNA 0.47 18 41006975 41034224

Neighbor

gene id symbol gene type direction distance location
XLOC_014239 col1a2 coding upstream 3995 40983221 ~ 41002980 (+)
XLOC_014238 CR749767.1 coding upstream 48359 40958500 ~ 40958616 (+)
XLOC_014237 zgc:85777 coding upstream 108375 40861853 ~ 40898600 (+)
XLOC_014236 gngt1 coding upstream 147507 40856534 ~ 40859468 (+)
XLOC_014235 si:ch211-120e1.1 coding upstream 172019 40832493 ~ 40834956 (+)
XLOC_014241 ppp1r9a coding downstream 41264 41075488 ~ 41160943 (+)
XLOC_014242 asb4 coding downstream 135772 41169996 ~ 41182251 (+)
XLOC_014243 NA coding downstream 153588 41187812 ~ 41191519 (+)
XLOC_014244 NA coding downstream 199584 41233808 ~ 41238528 (+)
XLOC_014245 dlx6a coding downstream 385295 41419519 ~ 41467041 (+)
XLOC_014234 NA non-coding upstream 269991 40692428 ~ 40736984 (+)
XLOC_014230 NA non-coding upstream 673881 40328712 ~ 40333094 (+)
XLOC_014224 NA non-coding upstream 940384 40057836 ~ 40066591 (+)
XLOC_014222 BX957260.1 non-coding upstream 1037517 39927406 ~ 39969458 (+)
XLOC_014252 NA non-coding downstream 803527 41837751 ~ 41841201 (+)
XLOC_014255 NA non-coding downstream 1093699 42127923 ~ 42140654 (+)
XLOC_014257 CU896644.3 non-coding downstream 1154766 42188990 ~ 42189104 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_02514735_02525669 CASD1 coding CI01000054 null 2514659 ~ 2525669 (-)
bowfin (Amia calva) AMCG00021536 NA coding CM030130.1 CM030130.1 20829853 ~ 20842424 (+)