XLOC_014247 (si:ch211-57n23.1)


Basic Information

Item Value
gene id XLOC_014247
gene name si:ch211-57n23.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41509956 ~ 41513809 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028316
GTATCGAGACACGGCCAGTCCTCCAGCTGATCGACAGTCTGGAACGGGGGAAAAGTGGCGTTTAATAACTTTAAACTTAACCATGTCGTGTTGTTTATAAAAGTCATTGTGTATTTAGTGTATCACTGTCGTGTTCGTGGAAAACAGCAGGTTTTTCTTAGCGTCAGTTAACTGGTCAGATGAGTTGTGCAGCTCTGAGGAGCGAGTCAGATTTTCCAATCGCTCATTTATGAGGAGATCGCGAGCCTTTTTTCAGCCTGCTGATCTACAACAGCCTCTGAGGATGATGTGGTGTGTTTTGTCCTGCTGTGTGCTCCTTCTGTCGATCTGCTCCCACTCAGCCCATGCAGGGATGGAGGACTCCGACTGGGGTTCTGGATTCCACGAGCTCCTCAGCAGTTTCCCAGCAGACAGTCCTTTCGTCAGAGAGACGCCCGGCAGACCTGCCAACTGCACCCAGCGCTTCTGGCTGCCACCATCCTCCCCGGTGTGCTGGGATGACATCGCGGGACCAGAGGAGTTTGAGAAGTCCCGTATGCTGGTGCTGCAGAACCGGGCCGCTCTGCAGGCCGTGTCCACATCCAGCGGCCTGGAGGATGGAGGAGTGTCTTACGATCAGCAGGCCAGAGAGGAGGTGCAGGGCGTGCGGGAAGATCACCTTGCAGTCATCCAGACCACAGACACCATGCAGAAAGTCTTCCTGGATCTGGAGGAGAAGAGGAAGGAGGGGAAAGAGCATTATACCTTCAACAGtctGAAGGAGCAAATGGAAAACACCAGAGGCTCTATTGCTAACCGTGAGCAAGCCGCAGCTCTTCTGGAGAAGCACCTGCTCAATCTGGAGAGGTTTTTGAACACTATGCAGCTTCGACTTGATGAACTGttttattagtaatttaataTGAGCAACGCAAACCAGCTCATGGCAAACAAACGTATGGAAAACAACATAATGCATgcttcattcatgtttttaaattcaAAGATACAGCTTCTTTGACAGTGTACTGCATGCTAAAATGGCACCCTGCGTTTTGCTTTTGGTGTGCATTTTTTCTACTCTGTTAccctcatat
>TCONS_00028317
CGGGGGAAAAGTGGCGTTTAATAACTTTAAACTTAACCATGTCGTGTTGTTTATAAAAGTCATTGTGTATTTAGTGTATCACTGTCGTGTTCGTGGAAAACAGCAGGTTTTTCTTAGCGTCAGTTAACTGGTCAGATGAGTTGTGCAGCTCTGAGGAGCGAGTCAGATTTTCCAATCGCTCATTTATGAGGAGATCGCGAGCCTTTTTTCAGCCTGCTGATCTACAACAGCCTCTGAGGACAGGATGATGTGGTGTGTTTTGTCCTGCTGTGTGCTCCTTCTGTCGATCTGCTCCCACTCAGCCCATGCAGGGATGGAGGACTCCGACTGGGGTTCTGGATTCCACGAGCTCCTCAGCAGTTTCCCAGCAGACAGTCCTTTCGTCAGAGAGACGCCCGGCAGACCTGCCAACTGCACCCAGCGCTTCTGGCTGCCACCATCCTCCCCGGTGTGCTGGGATGACATCGCGGGACCAGAGGAGTTTGAGAAGTCCCGTATGCTGGTGCTGCAGAACCGGGCCGCTCTGCAGGCCGTGTCCACATCCAGCGGCCTGGAGGATGGAGGAGTGTCTTACGATCAGCAGGCCAGAGAGGAGGTGCAGGGCGTGCGGGAAGATCACCTTGCAGTCATCCAGACCACAGACACCATGCAGAAAGTCTTCCTGGATCTGGAGGAGAAGAGGAAGGAGGGGAAAGAGCATTATACCTTCAACAGtctGAAGGAGCAAATGGAAAACACCAGAGGCTCTATTGCTAACCGTGAGCAAGCCGCAGCTCTTCTGGAGAAGCACCTGCTCAATCTGGAGAGGTTTTTGAACACTATGCAGCTTCGACTTGATGAACTGttttattagtaatttaataTGAGCAACGCAAACCAGCTCATGGCAAACAAACGTATGGAAAACAACATAATGCATgcttcattcatgtttttaaattcaAAGATACAGCTTCTTTGACAGTGTACTGCATGCTAAAATGGCACCCTGCGTTTTGCTTTTGGTGTGCATTTTTTCTACTCTGTTAcc

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141219-29 No description available

Ensembl:

ensembl_id ENSDARG00000099891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028316 False 1076 mRNA 0.50 3 41509956 41513809
TCONS_00028317 True 1030 mRNA 0.50 3 41510000 41513802

Neighbor

gene id symbol gene type direction distance location
XLOC_014246 ago2 coding upstream 10311 41479990 ~ 41499645 (+)
XLOC_014245 dlx6a coding upstream 42915 41419519 ~ 41467041 (+)
XLOC_014244 NA coding upstream 271428 41233808 ~ 41238528 (+)
XLOC_014243 NA coding upstream 318437 41187812 ~ 41191519 (+)
XLOC_014242 asb4 coding upstream 327705 41169996 ~ 41182251 (+)
XLOC_014248 crtc2 coding downstream 7083 41520892 ~ 41540572 (+)
XLOC_014249 si:ch211-57n23.4 coding downstream 37526 41551335 ~ 41597464 (+)
XLOC_014250 gatad2b coding downstream 187851 41701660 ~ 41724246 (+)
XLOC_014251 tinagl1 coding downstream 255326 41769135 ~ 41829721 (+)
XLOC_014252 NA coding downstream 323942 41837751 ~ 41841201 (+)
XLOC_014238 CR749767.1 non-coding upstream 551340 40958500 ~ 40958616 (+)
XLOC_014234 NA non-coding upstream 772972 40692428 ~ 40736984 (+)
XLOC_014230 NA non-coding upstream 1176862 40328712 ~ 40333094 (+)
XLOC_014255 NA non-coding downstream 614114 42127923 ~ 42140654 (+)
XLOC_014257 CU896644.3 non-coding downstream 675181 42188990 ~ 42189104 (+)
XLOC_014261 BX571688.1 non-coding downstream 823508 42337317 ~ 42337431 (+)
XLOC_014264 BX950855.1 non-coding downstream 992165 42505974 ~ 42516134 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_02200143_02200643 NA coding CI01000054 null 2199085 ~ 2200732 (-)