XLOC_014274 (dre-mir-128-2)


Basic Information

Item Value
gene id XLOC_014274
gene name dre-mir-128-2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42915419 ~ 42915541 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028365
tCTGCTCATGGGTCTGTCAGTAGTAGGACAGGGGGCCGTTTCTACTGTCAGAGATGCTGCCACTCGTCTCACAGTGAACCGGTCTCTTTTCCTGCTATTCACTTCTGCAATAATATGAGCAGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000083495

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028365 True 123 miRNA 0.50 1 42915419 42915541

Neighbor

gene id symbol gene type direction distance location
XLOC_014272 pdcd6ip coding upstream 40234 42847306 ~ 42875185 (+)
XLOC_014271 ubp1 coding upstream 73530 42806812 ~ 42841889 (+)
XLOC_014270 clasp2 coding upstream 113121 42693855 ~ 42802298 (+)
XLOC_014269 fbxl2 coding upstream 232472 42660158 ~ 42682947 (+)
XLOC_014268 crtap coding upstream 297696 42609132 ~ 42617723 (+)
XLOC_014275 fabp3 coding downstream 39739 42955280 ~ 42993306 (+)
XLOC_014276 snrnp40 coding downstream 88867 43004408 ~ 43016395 (+)
XLOC_014277 nkain1 coding downstream 102087 43017628 ~ 43035187 (+)
XLOC_014278 pum1 coding downstream 122116 43037657 ~ 43090728 (+)
XLOC_014279 CU207343.4 coding downstream 162203 43077744 ~ 43077879 (+)
XLOC_014266 NA non-coding upstream 312130 42560956 ~ 42603289 (+)
XLOC_014267 NA non-coding upstream 342292 42565358 ~ 42573127 (+)
XLOC_014265 NA non-coding upstream 368215 42518577 ~ 42547204 (+)
XLOC_014264 BX950855.1 non-coding upstream 399285 42505974 ~ 42516134 (+)
XLOC_014261 BX571688.1 non-coding upstream 577988 42337317 ~ 42337431 (+)
XLOC_014280 CU207343.3 non-coding downstream 165384 43080925 ~ 43081060 (+)
XLOC_014282 NA non-coding downstream 335012 43250553 ~ 43251194 (+)
XLOC_014291 NA non-coding downstream 631106 43546647 ~ 43549011 (+)
XLOC_014295 CR356238.1 non-coding downstream 749850 43665391 ~ 43665511 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G172385 NA non-coding NC_048566.1 CM023220.2 65481723 ~ 65482142 (+)
tiger barb (Puntius tetrazona) G132726 LOC107696582,LOC107591653,LOC107742849,LOC107669332,LOC107706187,LOC107593556 non-coding NC_056717.1 CM032086.1 13254836 ~ 13256019 (-)