XLOC_014276 (snrnp40)


Basic Information

Item Value
gene id XLOC_014276
gene name snrnp40
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43004408 ~ 43016395 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028368
AATCACATCGCTTCTTGTTACCGGACGTGTTTCACTCGACGAGCGTGTGTAGCTCAAAGGTGGAGGGTAGCTCGAAAAACTCATTCATTGAAAATAAGCGGATATTTTGACATACTGTTCATTTACTGTAGAAATCTGAGGCATTTACATAGCAATGATCGAACCAAAGAAGCGTGTGGCGGATATGGCCGTTGTTCCCGTAGGAGTGAAGAGGCCGCGGACGGAGCTGGTGGCCGCAGCACAATCCCAGCAGCTCTCCGCTATGggccCGCCACGCAGCTCCAGTCTGCAGGCTCCTATAATGCTGCTCTCTGGTCATGAAGGAGAAGTTTACTGCTGCAAATTTCACCCTAATGGAGCCACTTTAGCCTCTTCAGGATACGACCGCCTCATCTTGATGTGGAATGTTTATGGAGACTGTGAAAACTACGCCACGCTTAAAGGCCACAGTGGAGCCGTGATGGAGCTTCATTATAACACAGacggcagcCTGCTGTTCTCTGCCAGTACGGAtaagacagtgtgtgtgtgggacAGCGAGACGGGGGAGCGTGTGAAGCGGCTGAAAGGCCACACGTCCTTCGTGAACTCGTGTTTTCCAGCACGTCGCGGCCCACAGCTGGCCTGCACCGGCAGCGATGACGGAACTGTGAAGctGTGGGACATCAGAAAGAAAGCCTCCGTTCACACTTTCCAGAACACATATCAGGTTCTTAGTGTGACGTTCAATGACACCAGTGACCAGATCATCTCAGGAGGAATCGACAATGACATAAAGGTGTGGGACCTCAGACAGAACAAGCTGATTTACAGTATGCAGGGTCACGGGGACTCTGTGACTGGACTAAGTCTCAGCGCGGACGGATCTTACCTGCTCTCCAACTCCATGGATAACAGCGTTCGTGTCTGGGATATTCGTCCATTTGCACCAAAAGAAAGGTGTGTGAAGATCTTTCAGGGAAATGTCCATAACTTTGAGAAGAATCTTCTGAGATGCTCCTGGTCTGCTGATGGCAGTAAGATTGCAGCTGGCTCTGCTGACAGgtttGTGTATATTTGGGACACAACGACCCGCAGGATCGTCTATAAGCTCCCTGGTCACGCTGGCTCTGTCAATGAGGTGGCTTTCCATCCAGAGGAGCCCATTGttctgtctggatccaGTGATAAACGCCTCTACATCGGAGAGAttcaataagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcgcgtgtgcgtgtgcgtgtgtgtgtgcgtgtgagaggaTTAGGAGGAGATATGATTTGGAATTTGGCTGTATCTGTATTTGTCTGCAGAATATTGCTGGCCAGTTGTGGGAAATTGTTGAACGTTGcctttttttatgcttttaataAACTTGTTTCCAGAA

Function

symbol description
snrnp40 Predicted to be located in viral nucleocapsid. Orthologous to human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40).

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-978 Predicted to be located in viral nucleocapsid. Orthologous to human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40).

Ensembl:

ensembl_id ENSDARG00000023160

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028368 True 1431 mRNA 0.50 10 43004408 43016395

Neighbor

gene id symbol gene type direction distance location
XLOC_014275 fabp3 coding upstream 11102 42955280 ~ 42993306 (+)
XLOC_014273 arpp21 coding upstream 87182 42886413 ~ 42917226 (+)
XLOC_014274 dre-mir-128-2 coding upstream 88867 42915419 ~ 42915541 (+)
XLOC_014272 pdcd6ip coding upstream 129223 42847306 ~ 42875185 (+)
XLOC_014271 ubp1 coding upstream 162519 42806812 ~ 42841889 (+)
XLOC_014277 nkain1 coding downstream 1233 43017628 ~ 43035187 (+)
XLOC_014278 pum1 coding downstream 21262 43037657 ~ 43090728 (+)
XLOC_014279 CU207343.4 coding downstream 61349 43077744 ~ 43077879 (+)
XLOC_014280 CU207343.3 coding downstream 64530 43080925 ~ 43081060 (+)
XLOC_014281 eef1a1l1 coding downstream 102619 43119014 ~ 43137740 (+)
XLOC_014266 NA non-coding upstream 401119 42560956 ~ 42603289 (+)
XLOC_014267 NA non-coding upstream 431281 42565358 ~ 42573127 (+)
XLOC_014265 NA non-coding upstream 457204 42518577 ~ 42547204 (+)
XLOC_014264 BX950855.1 non-coding upstream 488274 42505974 ~ 42516134 (+)
XLOC_014282 NA non-coding downstream 234158 43250553 ~ 43251194 (+)
XLOC_014291 NA non-coding downstream 530252 43546647 ~ 43549011 (+)
XLOC_014295 CR356238.1 non-coding downstream 648996 43665391 ~ 43665511 (+)

Expression


Co-expression Network